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Sed0012467 (gene) of Chayote v1 genome

Gene IDSed0012467
OrganismSechium edule (Chayote v1)
DescriptionAuxin-regulated gene involved in organ size
Genome locationLG03:7888406..7888987
RNA-Seq ExpressionSed0012467
SyntenySed0012467
Gene Ontology termsGO:0009741 - response to brassinosteroid (biological process)
GO:0009825 - multidimensional cell growth (biological process)
GO:0046622 - positive regulation of organ growth (biological process)
GO:0005634 - nucleus (cellular component)
GO:0005783 - endoplasmic reticulum (cellular component)
GO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR037468 - ARGOS/ARL/OSR1


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KGN61450.1 hypothetical protein Csa_006551 [Cucumis sativus]4.8e-2858.62Show/hide
Query:  MTLGFPQPDRAPAPNP-----------DRYYFMDGHARPGS----NPIQIPYYAA------------DLTPGTPRRLLPAATYLAVLLCLTASLLILPLI
        MTLGF + ++   PNP           + YY MDG +   +    +  +I YYAA             L+ GTPRRL+PAA+YL VLLCL ASLLILPL+
Subjt:  MTLGFPQPDRAPAPNP-----------DRYYFMDGHARPGS----NPIQIPYYAA------------DLTPGTPRRLLPAATYLAVLLCLTASLLILPLI

Query:  LPPLPPPPLMLLLLLPIGILGMLMVLAFMPSNDAKNIASSSHTYM
        LPPLPPPPLMLLLLLPIGILGMLMVLAFMPSND K+I SSSHTYM
Subjt:  LPPLPPPPLMLLLLLPIGILGMLMVLAFMPSNDAKNIASSSHTYM

XP_022930113.1 ARGOS-like protein [Cucurbita moschata]2.5e-2460Show/hide
Query:  MTLGFPQPDRAPAPNPD-----------------RYYFMDGHARPGSNPIQIPYYAADLTPGTPRRLLPAATYLAVLLCLTASLLILPLILPPLPPPPLM
        M+LG P  D    PNPD                  YYF+   A      ++   Y   L+ GT RRL+PAATYLAVL+CL ASLLILPLILPPLP PPLM
Subjt:  MTLGFPQPDRAPAPNPD-----------------RYYFMDGHARPGSNPIQIPYYAADLTPGTPRRLLPAATYLAVLLCLTASLLILPLILPPLPPPPLM

Query:  LLLLLPIGILGMLMVLAFMPSNDAKNIASSSHTYM
        LLLLLPIGILGMLMVLAFMPSNDAK+I SSSHT M
Subjt:  LLLLLPIGILGMLMVLAFMPSNDAKNIASSSHTYM

XP_022974015.1 ARGOS-like protein [Cucurbita maxima]1.5e-2457.14Show/hide
Query:  MTLGFPQPDRAPAPNPD--------------RYYFMDG----HARPGSNPIQIPY-----------YAADLTPGTPRRLLPAATYLAVLLCLTASLLILP
        M+LG P  D    PNPD               YYF+       A P SN    PY           Y   L+ GT RRL+PAATYLAVL+CL ASLLILP
Subjt:  MTLGFPQPDRAPAPNPD--------------RYYFMDG----HARPGSNPIQIPY-----------YAADLTPGTPRRLLPAATYLAVLLCLTASLLILP

Query:  LILPPLPPPPLMLLLLLPIGILGMLMVLAFMPSNDAKNIASSSHTYM
        LILPPLPPPPLMLLLLLPIGI+GMLMVLAFMPSN AK+I SS  TYM
Subjt:  LILPPLPPPPLMLLLLLPIGILGMLMVLAFMPSNDAKNIASSSHTYM

XP_023514167.1 ARGOS-like protein [Cucurbita pepo subsp. pepo]2.7e-2355.48Show/hide
Query:  MTLGFPQPDRAPAPNPDRYYFM-----DGHARPGSNPIQIPYY---AAD-----------------------------LTPGTPRRLLPAATYLAVLLCL
        M+LG P  D    PNPD +  M     + H     NP    YY   AAD                             L+ GT RRL+PAATYLAVL+CL
Subjt:  MTLGFPQPDRAPAPNPDRYYFM-----DGHARPGSNPIQIPYY---AAD-----------------------------LTPGTPRRLLPAATYLAVLLCL

Query:  TASLLILPLILPPLPPPPLMLLLLLPIGILGMLMVLAFMPSNDAKNIASSSHTYM
         ASLLILPLILPPLP PPLMLLLLLPIGILGMLMVLAFMPSNDAK+I SSSHTYM
Subjt:  TASLLILPLILPPLPPPPLMLLLLLPIGILGMLMVLAFMPSNDAKNIASSSHTYM

XP_038875191.1 ARGOS-like protein [Benincasa hispida]6.5e-2558.9Show/hide
Query:  MTLGFPQ-PDRAPAPNPD----------RYYF-MDGHAR----PGSNPIQIPYYAA-----------DLTPGTPRRLLPAATYLAVLLCLTASLLILPLI
        M+LGF +  ++   PNPD           YYF MDG          +  +I YYAA            L+ GTPRRL+PAA+YL VLLCL ASLLILPL+
Subjt:  MTLGFPQ-PDRAPAPNPD----------RYYF-MDGHAR----PGSNPIQIPYYAA-----------DLTPGTPRRLLPAATYLAVLLCLTASLLILPLI

Query:  LPPLPPPPLMLLLLLPIGILGMLMVLAFMPSNDAKNI-ASSSHTYM
        LPPLPPPPLMLLLLLPIGILGMLMVLAFMPSND K+I +SSSHTYM
Subjt:  LPPLPPPPLMLLLLLPIGILGMLMVLAFMPSNDAKNI-ASSSHTYM

TrEMBL top hitse value%identityAlignment
A0A0A0LHQ4 Uncharacterized protein2.3e-2858.62Show/hide
Query:  MTLGFPQPDRAPAPNP-----------DRYYFMDGHARPGS----NPIQIPYYAA------------DLTPGTPRRLLPAATYLAVLLCLTASLLILPLI
        MTLGF + ++   PNP           + YY MDG +   +    +  +I YYAA             L+ GTPRRL+PAA+YL VLLCL ASLLILPL+
Subjt:  MTLGFPQPDRAPAPNP-----------DRYYFMDGHARPGS----NPIQIPYYAA------------DLTPGTPRRLLPAATYLAVLLCLTASLLILPLI

Query:  LPPLPPPPLMLLLLLPIGILGMLMVLAFMPSNDAKNIASSSHTYM
        LPPLPPPPLMLLLLLPIGILGMLMVLAFMPSND K+I SSSHTYM
Subjt:  LPPLPPPPLMLLLLLPIGILGMLMVLAFMPSNDAKNIASSSHTYM

A0A4Y1RWF6 ARGOS-like protein2.2e-1064.1Show/hide
Query:  GTPRRLLPAATY----LAVLLCLTASLLILPLILPPLPPPPLMLLLLLPIGILGMLMVLAFMPSNDAKNIASSSHTYM
        G+ RRLLPA+ +    L +L+CLTA+LLILPLILPPLPPPP M LLLLPIGIL +LM+LAFMPS    N+   +HTY+
Subjt:  GTPRRLLPAATY----LAVLLCLTASLLILPLILPPLPPPPLMLLLLLPIGILGMLMVLAFMPSNDAKNIASSSHTYM

A0A5C7IV35 Uncharacterized protein4.4e-1157.58Show/hide
Query:  DRY--YFMDGHARPGSNPIQIP----YYAADLTPGTPRRLLPAATY----LAVLLCLTASLLILPLILPPLPPPPLMLLLLLPIGILGMLMVLAFMPSN
        DRY    MDG  R  + P  +      Y   L+ G+ RRLLPA+ Y    L +L+CLT SLLILPLILPPLPPPP M LLLLPI IL +LM+LAFMPSN
Subjt:  DRY--YFMDGHARPGSNPIQIP----YYAADLTPGTPRRLLPAATY----LAVLLCLTASLLILPLILPPLPPPPLMLLLLLPIGILGMLMVLAFMPSN

A0A6J1EU41 ARGOS-like protein1.2e-2460Show/hide
Query:  MTLGFPQPDRAPAPNPD-----------------RYYFMDGHARPGSNPIQIPYYAADLTPGTPRRLLPAATYLAVLLCLTASLLILPLILPPLPPPPLM
        M+LG P  D    PNPD                  YYF+   A      ++   Y   L+ GT RRL+PAATYLAVL+CL ASLLILPLILPPLP PPLM
Subjt:  MTLGFPQPDRAPAPNPD-----------------RYYFMDGHARPGSNPIQIPYYAADLTPGTPRRLLPAATYLAVLLCLTASLLILPLILPPLPPPPLM

Query:  LLLLLPIGILGMLMVLAFMPSNDAKNIASSSHTYM
        LLLLLPIGILGMLMVLAFMPSNDAK+I SSSHT M
Subjt:  LLLLLPIGILGMLMVLAFMPSNDAKNIASSSHTYM

A0A6J1ICV1 ARGOS-like protein7.0e-2557.14Show/hide
Query:  MTLGFPQPDRAPAPNPD--------------RYYFMDG----HARPGSNPIQIPY-----------YAADLTPGTPRRLLPAATYLAVLLCLTASLLILP
        M+LG P  D    PNPD               YYF+       A P SN    PY           Y   L+ GT RRL+PAATYLAVL+CL ASLLILP
Subjt:  MTLGFPQPDRAPAPNPD--------------RYYFMDG----HARPGSNPIQIPY-----------YAADLTPGTPRRLLPAATYLAVLLCLTASLLILP

Query:  LILPPLPPPPLMLLLLLPIGILGMLMVLAFMPSNDAKNIASSSHTYM
        LILPPLPPPPLMLLLLLPIGI+GMLMVLAFMPSN AK+I SS  TYM
Subjt:  LILPPLPPPPLMLLLLLPIGILGMLMVLAFMPSNDAKNIASSSHTYM

SwissProt top hitse value%identityAlignment
C7SFP6 Protein AUXIN-REGULATED GENE INVOLVED IN ORGAN SIZE4.4e-0856.34Show/hide
Query:  TPGTPRRLLPAATY-----LAVLLCLTASLLILPLILPPLPPPPLMLLLLLPIGILGMLMVLAFMPSNDAK
        T  + +RL+  A Y     L +L+ LTASLLILPL+LPPLPPPP M LLL+PIGI+ +L++LAFMPS+ ++
Subjt:  TPGTPRRLLPAATY-----LAVLLCLTASLLILPLILPPLPPPPLMLLLLLPIGILGMLMVLAFMPSNDAK

Q6NMD6 Protein AUXIN-REGULATED GENE INVOLVED IN ORGAN SIZE4.9e-0762.9Show/hide
Query:  RRLLPAATY----LAVLLCLTASLLILPLILPPLPPPPLMLLLLLPIGILGMLMVLAFMPSN
        R ++PA  +    L +L+ LTASLLILPL+LPPLPPPP M LLL+PIGI+ +L+VLAFMPS+
Subjt:  RRLLPAATY----LAVLLCLTASLLILPLILPPLPPPPLMLLLLLPIGILGMLMVLAFMPSN

Q7X6L2 Protein AUXIN-REGULATED GENE INVOLVED IN ORGAN SIZE7.0e-0656.6Show/hide
Query:  LAVLLCLTASLLILPLILPPLPPPPLMLLLLLPIGILGMLMVLAFMPSNDAKN
        L +L+C+TASL+ILPL+LPPLPPPP M L+L+P+ +L +L+ LAFMP+  + +
Subjt:  LAVLLCLTASLLILPLILPPLPPPPLMLLLLLPIGILGMLMVLAFMPSNDAKN

Q8RXL7 ARGOS-like protein2.9e-1263.64Show/hide
Query:  TPRRLLPAATY----LAVLLCLTASLLILPLILPPLPPPPLMLLLLLPIGILGMLMVLAFMPSNDAKNIASSSHTYM
        +PRRL+ A+ +    + VL+ LTASLLILPLILPPLPPPP M LLL+PIGI+ +LMVLAFMPS+++K+++SSS T+M
Subjt:  TPRRLLPAATY----LAVLLCLTASLLILPLILPPLPPPPLMLLLLLPIGILGMLMVLAFMPSNDAKNIASSSHTYM

Arabidopsis top hitse value%identityAlignment
AT2G41230.1 unknown protein8.8e-0450.72Show/hide
Query:  DLTP---GTPRRLLPAATYLAVLLCLTASLLILPLILPPLPPPPLMLLLLLPIGILGMLMVLAFMPSND
        D+TP   G     L  A  +A+LL L+  LLILP  LPPLPPPP   LLLLP+ ++ +L+ LAF PSN+
Subjt:  DLTP---GTPRRLLPAATYLAVLLCLTASLLILPLILPPLPPPPLMLLLLLPIGILGMLMVLAFMPSND

AT2G44080.1 ARGOS-like2.1e-1363.64Show/hide
Query:  TPRRLLPAATY----LAVLLCLTASLLILPLILPPLPPPPLMLLLLLPIGILGMLMVLAFMPSNDAKNIASSSHTYM
        +PRRL+ A+ +    + VL+ LTASLLILPLILPPLPPPP M LLL+PIGI+ +LMVLAFMPS+++K+++SSS T+M
Subjt:  TPRRLLPAATY----LAVLLCLTASLLILPLILPPLPPPPLMLLLLLPIGILGMLMVLAFMPSNDAKNIASSSHTYM

AT3G59900.1 auxin-regulated gene involved in organ size3.5e-0862.9Show/hide
Query:  RRLLPAATY----LAVLLCLTASLLILPLILPPLPPPPLMLLLLLPIGILGMLMVLAFMPSN
        R ++PA  +    L +L+ LTASLLILPL+LPPLPPPP M LLL+PIGI+ +L+VLAFMPS+
Subjt:  RRLLPAATY----LAVLLCLTASLLILPLILPPLPPPPLMLLLLLPIGILGMLMVLAFMPSN


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACTCTCGGATTTCCACAACCCGACCGCGCACCCGCTCCCAACCCGGATCGCTACTACTTCATGGACGGCCACGCCCGACCCGGATCCAACCCTATTCAGATCCCCTA
TTACGCCGCCGATCTCACGCCAGGAACGCCGCGCCGCCTCCTCCCCGCCGCCACCTACTTGGCCGTCCTCCTCTGCCTCACGGCGTCGCTCTTGATCCTCCCCTTGATTC
TTCCGCCGCTCCCGCCGCCGCCGCTCATGCTTCTACTGCTCCTTCCGATCGGGATTCTGGGTATGCTCATGGTGTTGGCGTTTATGCCTTCCAACGATGCCAAGAATATC
GCCTCCTCTTCTCATACGTATATGTAA
mRNA sequenceShow/hide mRNA sequence
ATTTGCATTCATCCCCCCTTTTTTCTCCTCTAATTCCCATAAATCCCCCCTTTCCGATTCTCCCTCGCCAAACTAATGACTCTCGGATTTCCACAACCCGACCGCGCACC
CGCTCCCAACCCGGATCGCTACTACTTCATGGACGGCCACGCCCGACCCGGATCCAACCCTATTCAGATCCCCTATTACGCCGCCGATCTCACGCCAGGAACGCCGCGCC
GCCTCCTCCCCGCCGCCACCTACTTGGCCGTCCTCCTCTGCCTCACGGCGTCGCTCTTGATCCTCCCCTTGATTCTTCCGCCGCTCCCGCCGCCGCCGCTCATGCTTCTA
CTGCTCCTTCCGATCGGGATTCTGGGTATGCTCATGGTGTTGGCGTTTATGCCTTCCAACGATGCCAAGAATATCGCCTCCTCTTCTCATACGTATATGTAAATGCCCAT
CCTCTTTTTTCTTTTTTTTTTCTTTTTTGAAAATTTTGTAACTCTGTTCTTACGGTGTAAAAGGTTCTTTCATTACTTCAAATGGAAATCATATTTTAGATTTATTAATG
AATATTCAATCTCTTCCTTTTTTTTGTTAATG
Protein sequenceShow/hide protein sequence
MTLGFPQPDRAPAPNPDRYYFMDGHARPGSNPIQIPYYAADLTPGTPRRLLPAATYLAVLLCLTASLLILPLILPPLPPPPLMLLLLLPIGILGMLMVLAFMPSNDAKNI
ASSSHTYM