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Sed0012470 (gene) of Chayote v1 genome

Gene IDSed0012470
OrganismSechium edule (Chayote v1)
Description60S ribosomal protein L18a-like protein
Genome locationLG01:16578309..16579727
RNA-Seq ExpressionSed0012470
SyntenySed0012470
Gene Ontology termsGO:0016020 - membrane (cellular component)
InterPro domainsIPR044804 - AT1G29970-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0057106.1 60S ribosomal protein L18a-like protein [Cucumis melo var. makuwa]7.0e-1468.12Show/hide
Query:  FMIGFFLGGIPWYVGAFNVLFGQVDYREKPGYAACVIAKLCFLFSCMLVRSVLACIAIIFGITMGAESW
        FMIGFFLGGIPWYVGAF VLF +VDYREKPGY AC IA            SVLA IAI FGIT G E W
Subjt:  FMIGFFLGGIPWYVGAFNVLFGQVDYREKPGYAACVIAKLCFLFSCMLVRSVLACIAIIFGITMGAESW

XP_004147407.1 60S ribosomal protein L18a-like protein [Cucumis sativus]7.0e-1468.12Show/hide
Query:  FMIGFFLGGIPWYVGAFNVLFGQVDYREKPGYAACVIAKLCFLFSCMLVRSVLACIAIIFGITMGAESW
        FMIGFFLGGIPWYVGAF VLF +VDYREKPGY AC IA            SVLA IAI FGIT G E W
Subjt:  FMIGFFLGGIPWYVGAFNVLFGQVDYREKPGYAACVIAKLCFLFSCMLVRSVLACIAIIFGITMGAESW

XP_008444018.1 PREDICTED: 60S ribosomal protein L18a-like protein [Cucumis melo]7.0e-1468.12Show/hide
Query:  FMIGFFLGGIPWYVGAFNVLFGQVDYREKPGYAACVIAKLCFLFSCMLVRSVLACIAIIFGITMGAESW
        FMIGFFLGGIPWYVGAF VLF +VDYREKPGY AC IA            SVLA IAI FGIT G E W
Subjt:  FMIGFFLGGIPWYVGAFNVLFGQVDYREKPGYAACVIAKLCFLFSCMLVRSVLACIAIIFGITMGAESW

XP_022140257.1 60S ribosomal protein L18a-like protein [Momordica charantia]8.3e-1568.12Show/hide
Query:  FMIGFFLGGIPWYVGAFNVLFGQVDYREKPGYAACVIAKLCFLFSCMLVRSVLACIAIIFGITMGAESW
        F+IGFFLGGIPWYVGAF VLF +VDYREKPGY ACVIA            SVLA +AI FG+T GAESW
Subjt:  FMIGFFLGGIPWYVGAFNVLFGQVDYREKPGYAACVIAKLCFLFSCMLVRSVLACIAIIFGITMGAESW

XP_038895475.1 60S ribosomal protein L18a-like protein [Benincasa hispida]7.0e-1468.12Show/hide
Query:  FMIGFFLGGIPWYVGAFNVLFGQVDYREKPGYAACVIAKLCFLFSCMLVRSVLACIAIIFGITMGAESW
        FMIGFFLGGIPWYVGAF VLF +VDYREKPGY AC IA            SVLA IAI FGIT G E W
Subjt:  FMIGFFLGGIPWYVGAFNVLFGQVDYREKPGYAACVIAKLCFLFSCMLVRSVLACIAIIFGITMGAESW

TrEMBL top hitse value%identityAlignment
A0A0A0M051 Uncharacterized protein3.4e-1468.12Show/hide
Query:  FMIGFFLGGIPWYVGAFNVLFGQVDYREKPGYAACVIAKLCFLFSCMLVRSVLACIAIIFGITMGAESW
        FMIGFFLGGIPWYVGAF VLF +VDYREKPGY AC IA            SVLA IAI FGIT G E W
Subjt:  FMIGFFLGGIPWYVGAFNVLFGQVDYREKPGYAACVIAKLCFLFSCMLVRSVLACIAIIFGITMGAESW

A0A1S3B9D9 60S ribosomal protein L18a-like protein3.4e-1468.12Show/hide
Query:  FMIGFFLGGIPWYVGAFNVLFGQVDYREKPGYAACVIAKLCFLFSCMLVRSVLACIAIIFGITMGAESW
        FMIGFFLGGIPWYVGAF VLF +VDYREKPGY AC IA            SVLA IAI FGIT G E W
Subjt:  FMIGFFLGGIPWYVGAFNVLFGQVDYREKPGYAACVIAKLCFLFSCMLVRSVLACIAIIFGITMGAESW

A0A5D3DB29 60S ribosomal protein L18a-like protein3.4e-1468.12Show/hide
Query:  FMIGFFLGGIPWYVGAFNVLFGQVDYREKPGYAACVIAKLCFLFSCMLVRSVLACIAIIFGITMGAESW
        FMIGFFLGGIPWYVGAF VLF +VDYREKPGY AC IA            SVLA IAI FGIT G E W
Subjt:  FMIGFFLGGIPWYVGAFNVLFGQVDYREKPGYAACVIAKLCFLFSCMLVRSVLACIAIIFGITMGAESW

A0A6J1CGC1 60S ribosomal protein L18a-like protein4.0e-1568.12Show/hide
Query:  FMIGFFLGGIPWYVGAFNVLFGQVDYREKPGYAACVIAKLCFLFSCMLVRSVLACIAIIFGITMGAESW
        F+IGFFLGGIPWYVGAF VLF +VDYREKPGY ACVIA            SVLA +AI FG+T GAESW
Subjt:  FMIGFFLGGIPWYVGAFNVLFGQVDYREKPGYAACVIAKLCFLFSCMLVRSVLACIAIIFGITMGAESW

A0A6J1KIR0 60S ribosomal protein L18a-like protein3.8e-1363.77Show/hide
Query:  FMIGFFLGGIPWYVGAFNVLFGQVDYREKPGYAACVIAKLCFLFSCMLVRSVLACIAIIFGITMGAESW
        FMIGFFLGGIPWYVGAF VLF +VDYREKPGY AC IA            SVLA +AI FG++ G E W
Subjt:  FMIGFFLGGIPWYVGAFNVLFGQVDYREKPGYAACVIAKLCFLFSCMLVRSVLACIAIIFGITMGAESW

SwissProt top hitse value%identityAlignment
Q8L9S1 60S ribosomal protein L18a-like protein5.4e-0958.33Show/hide
Query:  FMIGFFLGGIPWYVGAFNVLFGQVDYREKPGYAACVIAKLCFLFSCML
        F++GF  GGIPWY+GAF VL   VD+REK GY AC IA + +L + ML
Subjt:  FMIGFFLGGIPWYVGAFNVLFGQVDYREKPGYAACVIAKLCFLFSCML

Arabidopsis top hitse value%identityAlignment
AT1G17080.1 Ribosomal protein L18ae family5.7e-1451.43Show/hide
Query:  FMIGFFLGGIPWYVGAFNVLFG-QVDYREKPGYAACVIAKLCFLFSCMLVRSVLACIAIIFGITMGAESW
        F++GFFLG IPWYVG F ++FG ++DYREKPGY AC IA            ++LA IA+I G++ GA+ W
Subjt:  FMIGFFLGGIPWYVGAFNVLFG-QVDYREKPGYAACVIAKLCFLFSCMLVRSVLACIAIIFGITMGAESW

AT1G29970.1 60S ribosomal protein L18A-13.9e-1058.33Show/hide
Query:  FMIGFFLGGIPWYVGAFNVLFGQVDYREKPGYAACVIAKLCFLFSCML
        F++GF  GGIPWY+GAF VL   VD+REK GY AC IA + +L + ML
Subjt:  FMIGFFLGGIPWYVGAFNVLFGQVDYREKPGYAACVIAKLCFLFSCML

AT1G29970.2 60S ribosomal protein L18A-19.5e-0965.79Show/hide
Query:  FMIGFFLGGIPWYVGAFNVLFGQVDYREKPGYAACVIA
        F++GF  GGIPWY+GAF VL   VD+REK GY AC IA
Subjt:  FMIGFFLGGIPWYVGAFNVLFGQVDYREKPGYAACVIA

AT1G29970.3 60S ribosomal protein L18A-13.9e-1058.33Show/hide
Query:  FMIGFFLGGIPWYVGAFNVLFGQVDYREKPGYAACVIAKLCFLFSCML
        F++GF  GGIPWY+GAF VL   VD+REK GY AC IA + +L + ML
Subjt:  FMIGFFLGGIPWYVGAFNVLFGQVDYREKPGYAACVIAKLCFLFSCML

AT1G53560.1 Ribosomal protein L18ae family2.3e-1046.38Show/hide
Query:  FMIGFFLGGIPWYVGAFNVLFGQVDYREKPGYAACVIAKLCFLFSCMLVRSVLACIAIIFGITMGAESW
        F+IGF LG IPWYVG F ++  ++D REKPGY AC IA            +V+A I I+FG+  G   W
Subjt:  FMIGFFLGGIPWYVGAFNVLFGQVDYREKPGYAACVIAKLCFLFSCMLVRSVLACIAIIFGITMGAESW


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCTGGTAGAACGGAGGATAAATCACGTAACGACTCCTTTTCACCCCAACAAAGTGAAAAGGATATAACTTGCAAATCAGTGGCAATAAGGTTACGTAATTTGTCTCC
AAGGTCCCAGGTTCGAGATTCACCTGTGACACTACTTCTTCGATGTCTCCGATTTATGATTGGGTTCTTTCTGGGTGGCATTCCCTGGTATGTTGGAGCTTTTAATGTAC
TCTTTGGACAGGTTGATTACCGAGAAAAGCCTGGATATGCTGCATGTGTAATCGCTAAATTGTGCTTTCTTTTTTCTTGCATGCTCGTGCGGTCAGTTCTCGCGTGCATA
GCTATAATATTTGGCATAACCATGGGAGCTGAGTCCTGGTGA
mRNA sequenceShow/hide mRNA sequence
ATGTCTGGTAGAACGGAGGATAAATCACGTAACGACTCCTTTTCACCCCAACAAAGTGAAAAGGATATAACTTGCAAATCAGTGGCAATAAGGTTACGTAATTTGTCTCC
AAGGTCCCAGGTTCGAGATTCACCTGTGACACTACTTCTTCGATGTCTCCGATTTATGATTGGGTTCTTTCTGGGTGGCATTCCCTGGTATGTTGGAGCTTTTAATGTAC
TCTTTGGACAGGTTGATTACCGAGAAAAGCCTGGATATGCTGCATGTGTAATCGCTAAATTGTGCTTTCTTTTTTCTTGCATGCTCGTGCGGTCAGTTCTCGCGTGCATA
GCTATAATATTTGGCATAACCATGGGAGCTGAGTCCTGGTGA
Protein sequenceShow/hide protein sequence
MSGRTEDKSRNDSFSPQQSEKDITCKSVAIRLRNLSPRSQVRDSPVTLLLRCLRFMIGFFLGGIPWYVGAFNVLFGQVDYREKPGYAACVIAKLCFLFSCMLVRSVLACI
AIIFGITMGAESW