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Sed0012483 (gene) of Chayote v1 genome

Gene IDSed0012483
OrganismSechium edule (Chayote v1)
Description50S ribosomal protein L20
Genome locationLG01:5718033..5721019
RNA-Seq ExpressionSed0012483
SyntenySed0012483
Gene Ontology termsGO:0000027 - ribosomal large subunit assembly (biological process)
GO:0006412 - translation (biological process)
GO:0005737 - cytoplasm (cellular component)
GO:0005840 - ribosome (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
GO:0019843 - rRNA binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7035310.1 rplT, partial [Cucurbita argyrosperma subsp. argyrosperma]2.4e-6298.37Show/hide
Query:  MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLTKENIQLNRKVLSEISMHEPYSFKSLVD
        MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLTKENIQLNRKVLSE+SMHEPYSFKSLVD
Subjt:  MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLTKENIQLNRKVLSEISMHEPYSFKSLVD

Query:  ISRNAFPGNKNVVFPPKKDGISI
        ISRNAFPGNKNVVFPPKKDGIS+
Subjt:  ISRNAFPGNKNVVFPPKKDGISI

XP_022149620.1 uncharacterized protein LOC111018005 [Momordica charantia]7.8e-6196.75Show/hide
Query:  MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLTKENIQLNRKVLSEISMHEPYSFKSLVD
        MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGL KEN+QLNRKVLSEISMHEPYSFK+LVD
Subjt:  MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLTKENIQLNRKVLSEISMHEPYSFKSLVD

Query:  ISRNAFPGNKNVVFPPKKDGISI
        ISRNAFPGNKNVV PPKKDGISI
Subjt:  ISRNAFPGNKNVVFPPKKDGISI

XP_022947351.1 uncharacterized protein LOC111451238 [Cucurbita moschata]6.0e-6196.75Show/hide
Query:  MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLTKENIQLNRKVLSEISMHEPYSFKSLVD
        MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRL+GVNYGNFMHGL KENIQLNRKVLSE+SMHEPYSFKSLVD
Subjt:  MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLTKENIQLNRKVLSEISMHEPYSFKSLVD

Query:  ISRNAFPGNKNVVFPPKKDGISI
        ISRNAFPGNKNVVFPPKKDGIS+
Subjt:  ISRNAFPGNKNVVFPPKKDGISI

XP_023007267.1 uncharacterized protein LOC111499805 [Cucurbita maxima]1.2e-6197.56Show/hide
Query:  MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLTKENIQLNRKVLSEISMHEPYSFKSLVD
        MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGL KENIQLNRKVLSE+SMHEPYSFKSLVD
Subjt:  MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLTKENIQLNRKVLSEISMHEPYSFKSLVD

Query:  ISRNAFPGNKNVVFPPKKDGISI
        ISRNAFPGNKNVVFPPKKDGIS+
Subjt:  ISRNAFPGNKNVVFPPKKDGISI

XP_023512215.1 uncharacterized protein LOC111777010 [Cucurbita pepo subsp. pepo]3.0e-6094.31Show/hide
Query:  MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLTKENIQLNRKVLSEISMHEPYSFKSLVD
        MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGL KEN+QLNRKVLSE+SMHEPYSFK+LVD
Subjt:  MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLTKENIQLNRKVLSEISMHEPYSFKSLVD

Query:  ISRNAFPGNKNVVFPPKKDGISI
        ISRNAFPGNKNVVFPPKKD +S+
Subjt:  ISRNAFPGNKNVVFPPKKDGISI

TrEMBL top hitse value%identityAlignment
A0A6J1D684 50S ribosomal protein L203.8e-6196.75Show/hide
Query:  MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLTKENIQLNRKVLSEISMHEPYSFKSLVD
        MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGL KEN+QLNRKVLSEISMHEPYSFK+LVD
Subjt:  MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLTKENIQLNRKVLSEISMHEPYSFKSLVD

Query:  ISRNAFPGNKNVVFPPKKDGISI
        ISRNAFPGNKNVV PPKKDGISI
Subjt:  ISRNAFPGNKNVVFPPKKDGISI

A0A6J1FUI3 50S ribosomal protein L201.9e-6094.31Show/hide
Query:  MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLTKENIQLNRKVLSEISMHEPYSFKSLVD
        MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGL KEN+QLNRKVLSE+SMHEPYSFK+LVD
Subjt:  MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLTKENIQLNRKVLSEISMHEPYSFKSLVD

Query:  ISRNAFPGNKNVVFPPKKDGISI
        ISRNAFPGNKNVVFPPKKD +S+
Subjt:  ISRNAFPGNKNVVFPPKKDGISI

A0A6J1G662 50S ribosomal protein L202.9e-6196.75Show/hide
Query:  MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLTKENIQLNRKVLSEISMHEPYSFKSLVD
        MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRL+GVNYGNFMHGL KENIQLNRKVLSE+SMHEPYSFKSLVD
Subjt:  MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLTKENIQLNRKVLSEISMHEPYSFKSLVD

Query:  ISRNAFPGNKNVVFPPKKDGISI
        ISRNAFPGNKNVVFPPKKDGIS+
Subjt:  ISRNAFPGNKNVVFPPKKDGISI

A0A6J1JCG1 50S ribosomal protein L201.9e-6094.31Show/hide
Query:  MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLTKENIQLNRKVLSEISMHEPYSFKSLVD
        MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGL KEN+QLNRKVLSE+SMHEPYSFK+LVD
Subjt:  MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLTKENIQLNRKVLSEISMHEPYSFKSLVD

Query:  ISRNAFPGNKNVVFPPKKDGISI
        ISRNAFPGNKNVVFPPKKD +S+
Subjt:  ISRNAFPGNKNVVFPPKKDGISI

A0A6J1KY75 50S ribosomal protein L205.8e-6297.56Show/hide
Query:  MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLTKENIQLNRKVLSEISMHEPYSFKSLVD
        MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGL KENIQLNRKVLSE+SMHEPYSFKSLVD
Subjt:  MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLTKENIQLNRKVLSEISMHEPYSFKSLVD

Query:  ISRNAFPGNKNVVFPPKKDGISI
        ISRNAFPGNKNVVFPPKKDGIS+
Subjt:  ISRNAFPGNKNVVFPPKKDGISI

SwissProt top hitse value%identityAlignment
B6IPJ8 50S ribosomal protein L207.9e-3264.36Show/hide
Query:  KIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLTKENIQLNRKVLSEISMHEPYSFKSLVDISRN
        K+ KLAKG+RGR+  C RIA ERVEKAL+Y+YRDRRN+KRD R LWIQRINAG RLHG+ Y  FMHGL +  I+++RKVLS+I+  EP SFK+LV+ ++ 
Subjt:  KIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLTKENIQLNRKVLSEISMHEPYSFKSLVDISRN

Query:  A
        A
Subjt:  A

Q2GHR2 50S ribosomal protein L208.2e-2959.41Show/hide
Query:  KIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLTKENIQLNRKVLSEISMHEPYSFKSLVDISRN
        K+ KLAKG+RGR+KNC RIA +RVEKALQY+YRDRRN+KR  RSLWI RINA  R HG+ Y +F+HGL+  N+ LNRKVL++++++    FK +VD+ + 
Subjt:  KIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLTKENIQLNRKVLSEISMHEPYSFKSLVDISRN

Query:  A
        A
Subjt:  A

Q3YSX0 50S ribosomal protein L209.7e-3061.39Show/hide
Query:  KIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLTKENIQLNRKVLSEISMHEPYSFKSLVDISRN
        K+ KLAKG+RGR+KNC RIA +RVEKALQY+YRDRRN+KR  RSLWI RINA  R HG+ Y +F+HGL+  NI LNRKVL++++++   +FK +VDI++ 
Subjt:  KIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLTKENIQLNRKVLSEISMHEPYSFKSLVDISRN

Query:  A
        A
Subjt:  A

Q5FH69 50S ribosomal protein L201.1e-2857.43Show/hide
Query:  KIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLTKENIQLNRKVLSEISMHEPYSFKSLVDISRN
        K+ KLAKG+RGR+KNC R+A +RVEKALQY+YRDRRN+KR  RSLWI RINA  R +G+ Y +F++GL+  NI LNRK+L+++++H   +FK +VD+++ 
Subjt:  KIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLTKENIQLNRKVLSEISMHEPYSFKSLVDISRN

Query:  A
        A
Subjt:  A

Q5HC39 50S ribosomal protein L201.1e-2857.43Show/hide
Query:  KIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLTKENIQLNRKVLSEISMHEPYSFKSLVDISRN
        K+ KLAKG+RGR+KNC R+A +RVEKALQY+YRDRRN+KR  RSLWI RINA  R +G+ Y +F++GL+  NI LNRK+L+++++H   +FK +VD+++ 
Subjt:  KIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLTKENIQLNRKVLSEISMHEPYSFKSLVDISRN

Query:  A
        A
Subjt:  A

Arabidopsis top hitse value%identityAlignment
AT1G16740.1 Ribosomal protein L202.0e-5483.61Show/hide
Query:  MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLTKENIQLNRKVLSEISMHEPYSFKSLVD
        MNK +IFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKR+MR LWI+RINAG+R HGVNYGNF+HGL KENIQLNRKVLSE+SMHEPYSFK+LVD
Subjt:  MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLTKENIQLNRKVLSEISMHEPYSFKSLVD

Query:  ISRNAFPGNKNVVFPPKKDGIS
        +SR +FPGNKNVV   +K  IS
Subjt:  ISRNAFPGNKNVVFPPKKDGIS

ATCG00660.1 ribosomal protein L205.1e-1039.33Show/hide
Query:  KDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGV--NYGNFMHGLTKENIQLNRKVLSEISM
        + K+   A  FRG      R   ++  +AL  ++RDR  +KRD R LWI RINA     GV  +Y  F+H L K+ + LNRK+L++I++
Subjt:  KDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGV--NYGNFMHGLTKENIQLNRKVLSEISM


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAACAAGGACAAGATATTTAAGCTAGCCAAGGGTTTCCGAGGCAGGGCCAAGAATTGCATAAGGATTGCCAGAGAGCGGGTGGAGAAGGCTCTCCAGTATTCATACAG
GGACCGTCGCAATAAGAAGCGGGACATGCGCTCCCTTTGGATACAACGCATCAATGCTGGCACCCGCCTTCATGGGGTAAATTATGGAAATTTCATGCATGGGCTGACGA
AGGAGAACATTCAACTAAATAGAAAAGTATTATCAGAGATCTCAATGCACGAACCTTACAGTTTCAAGTCCCTGGTAGACATTTCTCGCAATGCATTTCCCGGAAACAAG
AATGTAGTGTTTCCCCCAAAGAAGGATGGCATTTCCATAGATGCTTAA
mRNA sequenceShow/hide mRNA sequence
TTCAAAGTTAATCGACAAAAATGATATATTAAAAAAAACAAAAATTGAAAATTTGGTCAGTCAGCCCAGATTAAAAAATAAAAATGAAGAGAAAATACCCTTTCATCCTC
CTCTTTCGCTCTCTGTTTCAGATAATCAGTGTCGCCGCCGCCGTCTTTCTTCCGGTCGATCCGCCACCGCCTTTCTTCCGGTCGAGCCTACCTCCAACCGGTTTTGCGCT
GATTTTCCACTTGTGTTACTGGTATTTTCTCGATCTCCATTTGTTGAGCATAGCAAGGAAAAGGGATGAACAAGGACAAGATATTTAAGCTAGCCAAGGGTTTCCGAGGC
AGGGCCAAGAATTGCATAAGGATTGCCAGAGAGCGGGTGGAGAAGGCTCTCCAGTATTCATACAGGGACCGTCGCAATAAGAAGCGGGACATGCGCTCCCTTTGGATACA
ACGCATCAATGCTGGCACCCGCCTTCATGGGGTAAATTATGGAAATTTCATGCATGGGCTGACGAAGGAGAACATTCAACTAAATAGAAAAGTATTATCAGAGATCTCAA
TGCACGAACCTTACAGTTTCAAGTCCCTGGTAGACATTTCTCGCAATGCATTTCCCGGAAACAAGAATGTAGTGTTTCCCCCAAAGAAGGATGGCATTTCCATAGATGCT
TAATGGATCGTTTCCTCTAGAACTGCAGTTATATAGAAACAAACTCGGGATGCTTATCTGCCTTACGTTCATTGAGAGTTCATGCTCGTTGTTGAGCAAAAAGTTTTCTA
TTTCTTTTGTTGCATTAATTCTCCTAATGTTTCAGACACTGAAAAGCTTCTCCATTTGAAATGAAGTTTTCTTGGATGTTTTGTTTTAAATCCACAATCTTATTTTGTTG
TGGCAACTACAAGCTTTTGCAGGAGGTTCGGTCAAATTTTGTCATAGGGCAGTGACGGAGTTGACTTGTTGACTTTTGTAGGACATTTTCAAAAAATGTTAATCATTATA
GGG
Protein sequenceShow/hide protein sequence
MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLTKENIQLNRKVLSEISMHEPYSFKSLVDISRNAFPGNK
NVVFPPKKDGISIDA