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Sed0012508 (gene) of Chayote v1 genome

Gene IDSed0012508
OrganismSechium edule (Chayote v1)
DescriptionRNase H domain-containing protein
Genome locationLG06:39285633..39288896
RNA-Seq ExpressionSed0012508
SyntenySed0012508
Gene Ontology termsGO:0008152 - metabolic process (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
TXG53482.1 hypothetical protein EZV62_022651 [Acer yangbiense]2.0e-0932.2Show/hide
Query:  RFHFQEAWVNDPNREALIRKGWDEARIGANEFPSYLANYRNHLHSWGMKI------RKDKWRATNRLCLLIQEKYKRIDEIDFKKIFHLERELDEAN--E
        RFHF+EAW  D     L  K  D+  I        LA  +  L+   M++      R   WR  +   +     Y R +++ F        E   AN  E
Subjt:  RFHFQEAWVNDPNREALIRKGWDEARIGANEFPSYLANYRNHLHSWGMKI------RKDKWRATNRLCLLIQEKYKRIDEIDFKKIFHLERELDEAN--E

Query:  KGLIPMPIVFRELDRWKPPAEGALKLNVDASCHPIHNRVGLGAILPDSNGVCFAAASRVVVAALDPLAAETLAMIFGLRFALDRRATDVWVKSDAKGVVE
        KG   +P     + RW  P  G+ K+N DA+    +N+VG+GAI+ DS G    AA + + A  DP  AE +A++FGLR A+ R      ++SDA+ VV 
Subjt:  KGLIPMPIVFRELDRWKPPAEGALKLNVDASCHPIHNRVGLGAILPDSNGVCFAAASRVVVAALDPLAAETLAMIFGLRFALDRRATDVWVKSDAKGVVE

Query:  VVNKG
        ++  G
Subjt:  VVNKG

TXG57364.1 hypothetical protein EZV62_018677 [Acer yangbiense]5.7e-0937.04Show/hide
Query:  ANEKGLIPMPIVFRELDRWKPPAEGALKLNVDASCHPIHNRVGLGAILPDSNGVCFAAASRVVVAALDPLAAETLAMIFGLRFALDRRATDVWVKSDAKG
        AN KG         E  +W+ P  G  KLN DA+      +VG G I+ D  G    ++ +  +A + P AAE +A+  G+ FA++     + V+SDAKG
Subjt:  ANEKGLIPMPIVFRELDRWKPPAEGALKLNVDASCHPIHNRVGLGAILPDSNGVCFAAASRVVVAALDPLAAETLAMIFGLRFALDRRATDVWVKSDAKG

Query:  VVEVVNKG
        VVE++NKG
Subjt:  VVEVVNKG

XP_008219206.1 PREDICTED: uncharacterized protein LOC103319442 [Prunus mume]1.7e-0839Show/hide
Query:  PMPIVFRELDRWKPPAEGALKLNVDASCHPIHNRVGLGAILPDSNGVCFAAASRVVVAALDPLAAETLAMIFGLRFALDRRATDVWVKSDAKGVVEVVNK
        P+ +V +    W PPA G +K NVDAS  P  ++ G+G +L DS+G  FAA     V A   + AETLA++ G  FA+ +  T V ++SD+K  +  +N+
Subjt:  PMPIVFRELDRWKPPAEGALKLNVDASCHPIHNRVGLGAILPDSNGVCFAAASRVVVAALDPLAAETLAMIFGLRFALDRRATDVWVKSDAKGVVEVVNK

XP_015382715.1 uncharacterized protein LOC107175626 [Citrus sinensis]1.5e-0945.83Show/hide
Query:  RWKPPAEGALKLNVDASCHPIHNRVGLGAILPDSNGVCFAAASRVVVAALDPLAAETLAMIFGLRFALDRRATDVWVKSDAKGVVEVVN--KGHRS
        RW PP +  LKLNVDA+ +  + +VGLGA+L DSNG   AA  + V    D   AE  A+ +GL+ A +  AT + V++D K V E+VN  KG RS
Subjt:  RWKPPAEGALKLNVDASCHPIHNRVGLGAILPDSNGVCFAAASRVVVAALDPLAAETLAMIFGLRFALDRRATDVWVKSDAKGVVEVVN--KGHRS

XP_021825770.1 uncharacterized protein LOC110766714 [Prunus avium]3.0e-1044.94Show/hide
Query:  WKPPAEGALKLNVDASCHPIHNRVGLGAILPDSNGVCFAAASRVVVAALDPLAAETLAMIFGLRFALDRRATDVWVKSDAKGVVEVVNK
        W PPA G +K+NVDAS  P H++ G+G IL DS+GV FAA     +AA   + AETLA++ G  FA+    T V ++SD+K  +  +N+
Subjt:  WKPPAEGALKLNVDASCHPIHNRVGLGAILPDSNGVCFAAASRVVVAALDPLAAETLAMIFGLRFALDRRATDVWVKSDAKGVVEVVNK

TrEMBL top hitse value%identityAlignment
A0A1R3J0D7 Reverse transcriptase1.5e-0737.08Show/hide
Query:  WKPPAEGALKLNVDASCHPIHNRVGLGAILPDSNGVCFAAASRVVVAALDPLAAETLAMIFGLRFALDRRATDVWVKSDAKGVVEVVNK
        W PP  G LK+N DASC       GLG ++ +SNG    + SR +    DPL AE  A++FG   AL+    D   +SD+   +  + K
Subjt:  WKPPAEGALKLNVDASCHPIHNRVGLGAILPDSNGVCFAAASRVVVAALDPLAAETLAMIFGLRFALDRRATDVWVKSDAKGVVEVVNK

A0A5C7HA98 CCHC-type domain-containing protein9.4e-1032.2Show/hide
Query:  RFHFQEAWVNDPNREALIRKGWDEARIGANEFPSYLANYRNHLHSWGMKI------RKDKWRATNRLCLLIQEKYKRIDEIDFKKIFHLERELDEAN--E
        RFHF+EAW  D     L  K  D+  I        LA  +  L+   M++      R   WR  +   +     Y R +++ F        E   AN  E
Subjt:  RFHFQEAWVNDPNREALIRKGWDEARIGANEFPSYLANYRNHLHSWGMKI------RKDKWRATNRLCLLIQEKYKRIDEIDFKKIFHLERELDEAN--E

Query:  KGLIPMPIVFRELDRWKPPAEGALKLNVDASCHPIHNRVGLGAILPDSNGVCFAAASRVVVAALDPLAAETLAMIFGLRFALDRRATDVWVKSDAKGVVE
        KG   +P     + RW  P  G+ K+N DA+    +N+VG+GAI+ DS G    AA + + A  DP  AE +A++FGLR A+ R      ++SDA+ VV 
Subjt:  KGLIPMPIVFRELDRWKPPAEGALKLNVDASCHPIHNRVGLGAILPDSNGVCFAAASRVVVAALDPLAAETLAMIFGLRFALDRRATDVWVKSDAKGVVE

Query:  VVNKG
        ++  G
Subjt:  VVNKG

A0A5C7HKD5 Uncharacterized protein2.7e-0937.04Show/hide
Query:  ANEKGLIPMPIVFRELDRWKPPAEGALKLNVDASCHPIHNRVGLGAILPDSNGVCFAAASRVVVAALDPLAAETLAMIFGLRFALDRRATDVWVKSDAKG
        AN KG         E  +W+ P  G  KLN DA+      +VG G I+ D  G    ++ +  +A + P AAE +A+  G+ FA++     + V+SDAKG
Subjt:  ANEKGLIPMPIVFRELDRWKPPAEGALKLNVDASCHPIHNRVGLGAILPDSNGVCFAAASRVVVAALDPLAAETLAMIFGLRFALDRRATDVWVKSDAKG

Query:  VVEVVNKG
        VVE++NKG
Subjt:  VVEVVNKG

A0A5E4F9Q0 Auxin-responsive protein2.0e-0737.5Show/hide
Query:  WKPPAEGALKLNVDASCHPIHNRVGLGAILPDSNGVCFAAASRVVVAALDPLAAETLAMIFGLRFALDRRATDVWVKSDAKGVVEVVN
        WKPP    LKLNVD +C     ++GLGA++ ++N     A +++++  L P A E LAMI G + A+D   T + ++SD   V+  +N
Subjt:  WKPPAEGALKLNVDASCHPIHNRVGLGAILPDSNGVCFAAASRVVVAALDPLAAETLAMIFGLRFALDRRATDVWVKSDAKGVVEVVN

A0A6P5TFI9 uncharacterized protein LOC1107667141.5e-1044.94Show/hide
Query:  WKPPAEGALKLNVDASCHPIHNRVGLGAILPDSNGVCFAAASRVVVAALDPLAAETLAMIFGLRFALDRRATDVWVKSDAKGVVEVVNK
        W PPA G +K+NVDAS  P H++ G+G IL DS+GV FAA     +AA   + AETLA++ G  FA+    T V ++SD+K  +  +N+
Subjt:  WKPPAEGALKLNVDASCHPIHNRVGLGAILPDSNGVCFAAASRVVVAALDPLAAETLAMIFGLRFALDRRATDVWVKSDAKGVVEVVNK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATTGGTATGCATCTGATCACAGATCTATTTGTATTGATTTGGAAGGAGTCTCTGTTAATAGAAGGAGGTTTCACTCTCGCTTTCATTTTCAGGAAGCCTGGGTGAA
CGATCCTAACCGTGAAGCTTTAATTCGTAAAGGGTGGGATGAGGCCAGGATTGGAGCGAATGAATTTCCTTCTTACCTTGCGAACTATAGAAACCATTTGCATAGTTGGG
GAATGAAGATTAGGAAGGACAAATGGAGGGCTACTAATAGACTATGCTTGTTGATCCAAGAGAAGTATAAGCGTATTGATGAAATTGATTTTAAAAAGATTTTTCACCTT
GAAAGAGAGTTGGATGAGGCTAATGAGAAGGGACTCATTCCTATGCCTATTGTATTCCGGGAGCTTGACCGATGGAAGCCGCCTGCGGAGGGAGCTTTAAAGCTAAATGT
GGACGCATCTTGTCATCCCATCCATAATCGAGTGGGGTTAGGGGCGATTCTCCCAGACTCCAATGGAGTTTGTTTTGCTGCGGCATCTAGGGTTGTTGTTGCTGCGCTCG
ACCCCCTGGCTGCTGAAACTTTGGCGATGATTTTTGGCTTGCGTTTTGCTTTGGATAGAAGGGCTACTGATGTTTGGGTTAAATCTGACGCTAAGGGCGTTGTGGAGGTT
GTGAACAAAGGGCATCGATCAAACTAA
mRNA sequenceShow/hide mRNA sequence
ATGGATTGGTATGCATCTGATCACAGATCTATTTGTATTGATTTGGAAGGAGTCTCTGTTAATAGAAGGAGGTTTCACTCTCGCTTTCATTTTCAGGAAGCCTGGGTGAA
CGATCCTAACCGTGAAGCTTTAATTCGTAAAGGGTGGGATGAGGCCAGGATTGGAGCGAATGAATTTCCTTCTTACCTTGCGAACTATAGAAACCATTTGCATAGTTGGG
GAATGAAGATTAGGAAGGACAAATGGAGGGCTACTAATAGACTATGCTTGTTGATCCAAGAGAAGTATAAGCGTATTGATGAAATTGATTTTAAAAAGATTTTTCACCTT
GAAAGAGAGTTGGATGAGGCTAATGAGAAGGGACTCATTCCTATGCCTATTGTATTCCGGGAGCTTGACCGATGGAAGCCGCCTGCGGAGGGAGCTTTAAAGCTAAATGT
GGACGCATCTTGTCATCCCATCCATAATCGAGTGGGGTTAGGGGCGATTCTCCCAGACTCCAATGGAGTTTGTTTTGCTGCGGCATCTAGGGTTGTTGTTGCTGCGCTCG
ACCCCCTGGCTGCTGAAACTTTGGCGATGATTTTTGGCTTGCGTTTTGCTTTGGATAGAAGGGCTACTGATGTTTGGGTTAAATCTGACGCTAAGGGCGTTGTGGAGGTT
GTGAACAAAGGGCATCGATCAAACTAA
Protein sequenceShow/hide protein sequence
MDWYASDHRSICIDLEGVSVNRRRFHSRFHFQEAWVNDPNREALIRKGWDEARIGANEFPSYLANYRNHLHSWGMKIRKDKWRATNRLCLLIQEKYKRIDEIDFKKIFHL
ERELDEANEKGLIPMPIVFRELDRWKPPAEGALKLNVDASCHPIHNRVGLGAILPDSNGVCFAAASRVVVAALDPLAAETLAMIFGLRFALDRRATDVWVKSDAKGVVEV
VNKGHRSN