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Sed0012532 (gene) of Chayote v1 genome

Gene IDSed0012532
OrganismSechium edule (Chayote v1)
Description50S ribosomal protein L23
Genome locationLG07:18236379..18238539
RNA-Seq ExpressionSed0012532
SyntenySed0012532
Gene Ontology termsGO:0010584 - pollen exine formation (biological process)
GO:0015789 - UDP-N-acetylgalactosamine transmembrane transport (biological process)
GO:0032543 - mitochondrial translation (biological process)
GO:1902183 - regulation of shoot apical meristem development (biological process)
GO:1903070 - negative regulation of ER-associated ubiquitin-dependent protein catabolic process (biological process)
GO:1903857 - negative regulation of cytokinin dehydrogenase activity (biological process)
GO:1990569 - UDP-N-acetylglucosamine transmembrane transport (biological process)
GO:0000139 - Golgi membrane (cellular component)
GO:0005762 - mitochondrial large ribosomal subunit (cellular component)
GO:0005783 - endoplasmic reticulum (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0005463 - UDP-N-acetylgalactosamine transmembrane transporter activity (molecular function)
GO:0003735 - structural constituent of ribosome (molecular function)
GO:0003729 - mRNA binding (molecular function)
InterPro domainsIPR013025 - Ribosomal protein L25/L23
IPR012678 - Ribosomal protein L23/L15e core domain superfamily
IPR012677 - Nucleotide-binding alpha-beta plait domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7015390.1 rplW, partial [Cucurbita argyrosperma subsp. argyrosperma]2.2e-7585.38Show/hide
Query:  MGSRLGRRVVHFANLPIKLLMPTSVTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMEGKKKKRGGLLVAKPDYKKAYVTLRNSLSISPDLYP
        MGSRLGRRV+HFANLPIKLLMPTS TNITEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNM+GKKKKRGGLL+AKPDYKKAYVTLRN LSISPD+YP
Subjt:  MGSRLGRRVVHFANLPIKLLMPTSVTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMEGKKKKRGGLLVAKPDYKKAYVTLRNSLSISPDLYP

Query:  IRIIEEEKRNKNKQTKASILEEGEAKRHWMHQREPPAFKPYKGFANQSRRRTAGGEAVESSTKFPWSSMRS
        IRIIEE+KRN NKQ+K+SI+EEGEAKRHW+H++EP  FK YKGF+N+ RRRT   E VE STKFPWSSMRS
Subjt:  IRIIEEEKRNKNKQTKASILEEGEAKRHWMHQREPPAFKPYKGFANQSRRRTAGGEAVESSTKFPWSSMRS

XP_022929525.1 uncharacterized protein LOC111436066 [Cucurbita moschata]4.4e-7685.47Show/hide
Query:  MGSRLGRRVVHFANLPIKLLMPTSVTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMEGKKKKRGGLLVAKPDYKKAYVTLRNSLSISPDLYP
        MGSRLGRRV+HFANLPIKLLMPTS TNITEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNM+GKKKKRGGLL+AKPDYKKAYVTLRN LSISPD+YP
Subjt:  MGSRLGRRVVHFANLPIKLLMPTSVTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMEGKKKKRGGLLVAKPDYKKAYVTLRNSLSISPDLYP

Query:  IRIIEEEKRNKNKQTKASILEEGEAKRHWMHQREPPAFKPYKGFANQSRRRTAGGEAVESSTKFPWSSMRSG
        IRIIEE+KRN NKQ+K+SI+EEGEAKRHW+H++EP  FK YKGF+N+ RRRT   E VE STKFPWSSMRSG
Subjt:  IRIIEEEKRNKNKQTKASILEEGEAKRHWMHQREPPAFKPYKGFANQSRRRTAGGEAVESSTKFPWSSMRSG

XP_022985025.1 uncharacterized protein LOC111483116 [Cucurbita maxima]1.2e-7686.63Show/hide
Query:  MGSRLGRRVVHFANLPIKLLMPTSVTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMEGKKKKRGGLLVAKPDYKKAYVTLRNSLSISPDLYP
        MGSRLGRRVVHFANLPIKLLMPTS TNITEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNM+GKKKKRGGLL+AKPDYKKAYVTLRNSLSISPD+YP
Subjt:  MGSRLGRRVVHFANLPIKLLMPTSVTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMEGKKKKRGGLLVAKPDYKKAYVTLRNSLSISPDLYP

Query:  IRIIEEEKRNKNKQTKASILEEGEAKRHWMHQREPPAFKPYKGFANQSRRRTAGGEAVESSTKFPWSSMRSG
        IRIIEE+KRN NKQ+K+SI+EEGEAKRHW+H++EP  FK YKGF+++SRRRT   E VE STKFPWSSMRSG
Subjt:  IRIIEEEKRNKNKQTKASILEEGEAKRHWMHQREPPAFKPYKGFANQSRRRTAGGEAVESSTKFPWSSMRSG

XP_023531609.1 uncharacterized protein LOC111793793 [Cucurbita pepo subsp. pepo]8.3e-7585.47Show/hide
Query:  MGSRLGRRVVHFANLPIKLLMPTSVTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMEGKKKKRGGLLVAKPDYKKAYVTLRNSLSISPDLYP
        MGSRLGRRVVHFANLPIKLLMPTS TNITEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNM+GKKKKRGGLL+AKPDYKKAYVTLRN LSISPD+YP
Subjt:  MGSRLGRRVVHFANLPIKLLMPTSVTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMEGKKKKRGGLLVAKPDYKKAYVTLRNSLSISPDLYP

Query:  IRIIEEEKRNKNKQTKASILEEGEAKRHWMHQREPPAFKPYKGFANQSRRRTAGGEAVESSTKFPWSSMRSG
        IRIIEE+KRN NKQ+K+SI+EEGEAKRHW+H++E    K YKGFA++ RRR  G EAVE STKFPWSSMRSG
Subjt:  IRIIEEEKRNKNKQTKASILEEGEAKRHWMHQREPPAFKPYKGFANQSRRRTAGGEAVESSTKFPWSSMRSG

XP_023552749.1 uncharacterized protein LOC111810290 [Cucurbita pepo subsp. pepo]2.2e-7584.88Show/hide
Query:  MGSRLGRRVVHFANLPIKLLMPTSVTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMEGKKKKRGGLLVAKPDYKKAYVTLRNSLSISPDLYP
        MGSRLGRRV+HFANLPIKLLMPTS TNITEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNM+GKKKKRGGLL+AKPDYKKAYVTLRN LSISPD+YP
Subjt:  MGSRLGRRVVHFANLPIKLLMPTSVTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMEGKKKKRGGLLVAKPDYKKAYVTLRNSLSISPDLYP

Query:  IRIIEEEKRNKNKQTKASILEEGEAKRHWMHQREPPAFKPYKGFANQSRRRTAGGEAVESSTKFPWSSMRSG
        IRIIEE+KRN NKQ+K SI+EEGEAKRHW+H++EP  FK YKGFAN+ RR+T   E +E STKFPWSSMRSG
Subjt:  IRIIEEEKRNKNKQTKASILEEGEAKRHWMHQREPPAFKPYKGFANQSRRRTAGGEAVESSTKFPWSSMRSG

TrEMBL top hitse value%identityAlignment
A0A0A0L0J2 Uncharacterized protein1.5e-7484.39Show/hide
Query:  MGSRLGRRVVHFANLPIKLLMPTSVTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMEGKKKKRGGLLVAKPDYKKAYVTLRNSLSISPDLYP
        MGSRLGRRVVHFANLPIKLLMPTS TNITEIALKTIPSASKIEIKRVLESLYGFEVDKV+TLNMEGKKKKRGG+L+AKPDYKKAYVTLRN LSISPD+YP
Subjt:  MGSRLGRRVVHFANLPIKLLMPTSVTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMEGKKKKRGGLLVAKPDYKKAYVTLRNSLSISPDLYP

Query:  IRIIEEEKRNKNKQTKASILEEGEAKRHWMHQREPPAFKPYKGFANQSRRRTAGG-EAVESSTKFPWSSMRSG
        IRIIEE+KRN NKQ+K+SI+EEGEAK+HW+H++EP   K YKGFA++ RRR+ GG E VE STKFPWSSMRSG
Subjt:  IRIIEEEKRNKNKQTKASILEEGEAKRHWMHQREPPAFKPYKGFANQSRRRTAGG-EAVESSTKFPWSSMRSG

A0A5D3CZJ7 Nucleotide-binding, alpha-beta plait7.6e-7484.39Show/hide
Query:  MGSRLGRRVVHFANLPIKLLMPTSVTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMEGKKKKRGGLLVAKPDYKKAYVTLRNSLSISPDLYP
        MGSRLGRRVVHFANLPIKLLMPTS TNITEIALKTIPSASKIEIKRVLESLYGF+VDKVRTLNMEGKKKKRGG+L+AKPDYKKAYVTLRN LSIS D+YP
Subjt:  MGSRLGRRVVHFANLPIKLLMPTSVTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMEGKKKKRGGLLVAKPDYKKAYVTLRNSLSISPDLYP

Query:  IRIIEEEKRNKNKQTKASILEEGEAKRHWMHQREPPAFKPYKGFANQSRRRTAGG-EAVESSTKFPWSSMRSG
        IRIIEE+KRN NKQ+K+SI+EEGEAKRHW+H++EP   K YKGFA++ RRR  GG E VE STKFPWSSMRSG
Subjt:  IRIIEEEKRNKNKQTKASILEEGEAKRHWMHQREPPAFKPYKGFANQSRRRTAGG-EAVESSTKFPWSSMRSG

A0A6J1EUM4 uncharacterized protein LOC1114360662.1e-7685.47Show/hide
Query:  MGSRLGRRVVHFANLPIKLLMPTSVTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMEGKKKKRGGLLVAKPDYKKAYVTLRNSLSISPDLYP
        MGSRLGRRV+HFANLPIKLLMPTS TNITEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNM+GKKKKRGGLL+AKPDYKKAYVTLRN LSISPD+YP
Subjt:  MGSRLGRRVVHFANLPIKLLMPTSVTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMEGKKKKRGGLLVAKPDYKKAYVTLRNSLSISPDLYP

Query:  IRIIEEEKRNKNKQTKASILEEGEAKRHWMHQREPPAFKPYKGFANQSRRRTAGGEAVESSTKFPWSSMRSG
        IRIIEE+KRN NKQ+K+SI+EEGEAKRHW+H++EP  FK YKGF+N+ RRRT   E VE STKFPWSSMRSG
Subjt:  IRIIEEEKRNKNKQTKASILEEGEAKRHWMHQREPPAFKPYKGFANQSRRRTAGGEAVESSTKFPWSSMRSG

A0A6J1FSK6 uncharacterized protein LOC1114480494.5e-7484.88Show/hide
Query:  MGSRLGRRVVHFANLPIKLLMPTSVTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMEGKKKKRGGLLVAKPDYKKAYVTLRNSLSISPDLYP
        M SRLGRRVVHFANLPIKLLMPTS TNITEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNM+GKKKKRGGLL+AKPDYKKAYVTLRN LSISPD+YP
Subjt:  MGSRLGRRVVHFANLPIKLLMPTSVTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMEGKKKKRGGLLVAKPDYKKAYVTLRNSLSISPDLYP

Query:  IRIIEEEKRNKNKQTKASILEEGEAKRHWMHQREPPAFKPYKGFANQSRRRTAGGEAVESSTKFPWSSMRSG
        IRIIEE+KRN NKQ+K+SI+EEGEAKRHW+H++E    K YKGFA++ RRR  G EAVE STKFPWSSMRSG
Subjt:  IRIIEEEKRNKNKQTKASILEEGEAKRHWMHQREPPAFKPYKGFANQSRRRTAGGEAVESSTKFPWSSMRSG

A0A6J1JA70 uncharacterized protein LOC1114831165.6e-7786.63Show/hide
Query:  MGSRLGRRVVHFANLPIKLLMPTSVTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMEGKKKKRGGLLVAKPDYKKAYVTLRNSLSISPDLYP
        MGSRLGRRVVHFANLPIKLLMPTS TNITEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNM+GKKKKRGGLL+AKPDYKKAYVTLRNSLSISPD+YP
Subjt:  MGSRLGRRVVHFANLPIKLLMPTSVTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMEGKKKKRGGLLVAKPDYKKAYVTLRNSLSISPDLYP

Query:  IRIIEEEKRNKNKQTKASILEEGEAKRHWMHQREPPAFKPYKGFANQSRRRTAGGEAVESSTKFPWSSMRSG
        IRIIEE+KRN NKQ+K+SI+EEGEAKRHW+H++EP  FK YKGF+++SRRRT   E VE STKFPWSSMRSG
Subjt:  IRIIEEEKRNKNKQTKASILEEGEAKRHWMHQREPPAFKPYKGFANQSRRRTAGGEAVESSTKFPWSSMRSG

SwissProt top hitse value%identityAlignment
A0KF23 50S ribosomal protein L232.2e-0645.76Show/hide
Query:  IALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMEGKKKKRGGLLVAKPDYKKAYVTLR
        I  K    A+K E+K  +  L+  EV+ VRTLNM+GK K+ G  +  + D+KKAYVTL+
Subjt:  IALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMEGKKKKRGGLLVAKPDYKKAYVTLR

P55839 50S ribosomal protein L231.7e-0642.19Show/hide
Query:  IALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMEGKKKKRGGLLVAKPDYKKAYVTLRNSLSI
        I  K    A+K+EI   +E L+  +VD VRT+ ++GK K+RG  +  + D+KKAYVTL+   S+
Subjt:  IALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMEGKKKKRGGLLVAKPDYKKAYVTLRNSLSI

Q0ABH3 50S ribosomal protein L231.7e-0643.08Show/hide
Query:  EIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMEGKKKKRGGLLVAKPDYKKAYVTLRNSLSI
        E+  K    A K EI++ +E L+  +V  VRT+ M+GK+K+ G L   +PD+KKAYVTL     I
Subjt:  EIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMEGKKKKRGGLLVAKPDYKKAYVTLRNSLSI

Q0I161 50S ribosomal protein L231.0e-0642.47Show/hide
Query:  TNITE----IALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMEGKKKKRGGLLVAKPDYKKAYVTLRNSLSI
        TN TE    I  K    A+K+EI   +E L+  +VD VRT+ ++GK K+RG  +  + D+KKAYVTL+   S+
Subjt:  TNITE----IALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMEGKKKKRGGLLVAKPDYKKAYVTLRNSLSI

Q605B4 50S ribosomal protein L235.9e-0740Show/hide
Query:  EIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMEGKKKKRGGLLVAKPDYKKAYVTLRNSLSI
        +   +  P+ASK++IK  +E ++G +VD VR LN++GK K+ G  +  + D+KKAYV L+    I
Subjt:  EIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMEGKKKKRGGLLVAKPDYKKAYVTLRNSLSI

Arabidopsis top hitse value%identityAlignment
AT4G39880.1 Ribosomal protein L23/L15e family protein1.4e-5162.86Show/hide
Query:  MGSRLGRRVVHFANLPIKLLMPTSVTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMEGKKKKRGGLLVAKPDYKKAYVTLRNSLSISPDLYP
        MGSRLG RVVHFANLPIKLLMP  +TNI E ALKTIPSASKIEIKRVLESLYGF+V+KV TLNM+GKKKKRGGLL+AK DYKKAYVTLR+ LSIS DL+P
Subjt:  MGSRLGRRVVHFANLPIKLLMPTSVTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMEGKKKKRGGLLVAKPDYKKAYVTLRNSLSISPDLYP

Query:  IRIIEEEKRNKNKQTKASILEEGEAKRHWMHQREPPAFKPY-KGFANQSRRR----TAGGEAVESSTKFPWSSMR
        ++ IEE++++K K + + + EE + K HW+ ++E      Y KG   +   R    T GG A   + KFPWS+MR
Subjt:  IRIIEEEKRNKNKQTKASILEEGEAKRHWMHQREPPAFKPY-KGFANQSRRR----TAGGEAVESSTKFPWSSMR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGAAGCAGACTCGGAAGAAGAGTCGTTCACTTCGCAAATCTTCCGATCAAGCTCCTGATGCCAACTTCCGTCACCAACATCACTGAAATCGCTCTCAAAACCATCCC
CTCAGCTTCCAAGATCGAAATCAAGCGCGTCCTCGAGAGCCTCTACGGATTTGAGGTCGACAAAGTTCGGACTCTCAACATGGAGGGGAAGAAGAAGAAGCGCGGCGGCC
TTCTGGTCGCAAAGCCCGATTACAAGAAGGCCTACGTCACTCTCAGGAATTCCTTGTCCATTTCTCCGGACCTGTACCCCATCCGGATCATAGAGGAGGAGAAGAGGAAT
AAGAACAAGCAGACCAAGGCCAGCATCCTTGAGGAGGGAGAGGCCAAGAGGCATTGGATGCACCAGAGGGAGCCCCCTGCATTCAAACCTTACAAAGGTTTTGCGAATCA
AAGCCGCCGACGGACTGCCGGCGGTGAAGCTGTGGAATCATCGACTAAGTTCCCTTGGAGTAGCATGAGATCTGGCAGCAGCTGCAGGATTGCACTGCAACAGCAGGTCT
TCCAACATGTCTAG
mRNA sequenceShow/hide mRNA sequence
ATGGGAAGCAGACTCGGAAGAAGAGTCGTTCACTTCGCAAATCTTCCGATCAAGCTCCTGATGCCAACTTCCGTCACCAACATCACTGAAATCGCTCTCAAAACCATCCC
CTCAGCTTCCAAGATCGAAATCAAGCGCGTCCTCGAGAGCCTCTACGGATTTGAGGTCGACAAAGTTCGGACTCTCAACATGGAGGGGAAGAAGAAGAAGCGCGGCGGCC
TTCTGGTCGCAAAGCCCGATTACAAGAAGGCCTACGTCACTCTCAGGAATTCCTTGTCCATTTCTCCGGACCTGTACCCCATCCGGATCATAGAGGAGGAGAAGAGGAAT
AAGAACAAGCAGACCAAGGCCAGCATCCTTGAGGAGGGAGAGGCCAAGAGGCATTGGATGCACCAGAGGGAGCCCCCTGCATTCAAACCTTACAAAGGTTTTGCGAATCA
AAGCCGCCGACGGACTGCCGGCGGTGAAGCTGTGGAATCATCGACTAAGTTCCCTTGGAGTAGCATGAGATCTGGCAGCAGCTGCAGGATTGCACTGCAACAGCAGGTCT
TCCAACATGTCTAGAGGTATCAGAAATTGTTGAATGCTTGGTCCGACCACTTTGCCACTTCTCGAACGATTAATGTCACGGTGAGTCTTGAACTTTAGACCTTGAAAGAA
GTCTATCTTCAAAACTCAAGTCTTCAACCACTGTGCCACTTCTCGAGGACTATTGGCCACTCAAAGGAGAAGAAAGATCTTTTGTGTATGCCTTCTTTTGGATATGATGG
ATAGAACATAATGGCAGGGTTTTCAATGACCCAACACACTCCTTTCAAGGAGCATTGGAATCGAC
Protein sequenceShow/hide protein sequence
MGSRLGRRVVHFANLPIKLLMPTSVTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMEGKKKKRGGLLVAKPDYKKAYVTLRNSLSISPDLYPIRIIEEEKRN
KNKQTKASILEEGEAKRHWMHQREPPAFKPYKGFANQSRRRTAGGEAVESSTKFPWSSMRSGSSCRIALQQQVFQHV