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Sed0012534 (gene) of Chayote v1 genome

Gene IDSed0012534
OrganismSechium edule (Chayote v1)
DescriptionCCHC-type domain-containing protein
Genome locationLG07:37969109..37970994
RNA-Seq ExpressionSed0012534
SyntenySed0012534
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR001878 - Zinc finger, CCHC-type
IPR025836 - Zinc knuckle CX2CX4HX4C


Homology Show/hide homology
GenBank top hitse value%identityAlignment
TXG60247.1 hypothetical protein EZV62_014820 [Acer yangbiense]1.6e-1935.26Show/hide
Query:  NLEVVDD--ELDQANGGLENDA-----YC---KLLISRSTNADSFRSLIPKIWGLEGRMEIESLERNIFMCYFSNLKDKKSV-----------------T
        NL + D+  E+ Q +GG+EN+      +C   K+L+ R  N ++F+++I ++W   G +EIE +  N+FM YF+NL+D+  V                  
Subjt:  NLEVVDD--ELDQANGGLENDA-----YC---KLLISRSTNADSFRSLIPKIWGLEGRMEIESLERNIFMCYFSNLKDKKSV-----------------T

Query:  EG--------ENGRCRGKVLRLKAKIDIIKPLKRGMSLTLGAMGEPIWLEFSYERLPDYCFGCGCVGHGLKDC
        EG        E+  C GK LR+K +IDI +PLKR + L+L   G  + +   YER+P +C+ CG VGH L +C
Subjt:  EG--------ENGRCRGKVLRLKAKIDIIKPLKRGMSLTLGAMGEPIWLEFSYERLPDYCFGCGCVGHGLKDC

TXG60307.1 hypothetical protein EZV62_014880 [Acer yangbiense]1.6e-1630.62Show/hide
Query:  ERDIYFQLQGMHITEEEQKCNLEVVDDELDQANG--GLENDAYC---KLLISRSTNADSFRSLIPKIWGLEGRMEIESLERNIFMCYFSNL---------
        E DI    + + I +E      +V   E+ +A G  G E+   C   K+L  +  N ++F+ +I +IW   G +EIE +  N+FM YF N+         
Subjt:  ERDIYFQLQGMHITEEEQKCNLEVVDDELDQANG--GLENDAYC---KLLISRSTNADSFRSLIPKIWGLEGRMEIESLERNIFMCYFSNL---------

Query:  --------------------KDKKSVTE---------GENGRCRGKVLRLKAKIDIIKPLKRGMSLTLGAMGEPIWLEFSYERLPDYCFGCGCVGHGLKD
                            K +K + E          E+  C  K +R+K +IDI KPLKR + L LG   E   +   YERLP++CF CG +GHG+K 
Subjt:  --------------------KDKKSVTE---------GENGRCRGKVLRLKAKIDIIKPLKRGMSLTLGAMGEPIWLEFSYERLPDYCFGCGCVGHGLKD

Query:  CSKEVVKEV
        C  E  +++
Subjt:  CSKEVVKEV

TXG68181.1 hypothetical protein EZV62_003116 [Acer yangbiense]9.7e-1729.14Show/hide
Query:  EEQKCNLEVVDDELDQANGGLENDAYCKLLISRSTNADSFRSLIPKIWGLEGRMEIESLERNIFMCYFSNLKDKKSV---------------------TE
        +E +  LE+ +D   +    ++     K+L  +  N ++F+ LI +IW   G +E+E ++ NIF  +F+N +D   V                       
Subjt:  EEQKCNLEVVDDELDQANGGLENDAYCKLLISRSTNADSFRSLIPKIWGLEGRMEIESLERNIFMCYFSNLKDKKSV---------------------TE

Query:  GENGRCRGKVLRLKAKIDIIKPLKRGMSLTLGAMGEPIWLEFSYERLPDYCFGCGCVGHGLKDCSKEVVKEVGKT
         E+  CRGK +R+K +IDI K L+R + L L    E   +    ERLP++CF CG +GH +++C  E  +    T
Subjt:  GENGRCRGKVLRLKAKIDIIKPLKRGMSLTLGAMGEPIWLEFSYERLPDYCFGCGCVGHGLKDCSKEVVKEVGKT

TXG73181.1 hypothetical protein EZV62_001760 [Acer yangbiense]1.9e-1733.97Show/hide
Query:  KLLISRSTNADSFRSLIPKIWGLEGRMEIESLERNIFMCYFSNLKDKKSV--------------------------------TEGENGRCRGKVLRLKAK
        K+L  +  N D+F+S+I  +W   G +EIE +  N+F+ YF+N +D+  V                                   E+  C GK LR+K +
Subjt:  KLLISRSTNADSFRSLIPKIWGLEGRMEIESLERNIFMCYFSNLKDKKSV--------------------------------TEGENGRCRGKVLRLKAK

Query:  IDIIKPLKRGMSLTLGAMGEPIWLEFSYERLPDYCFGCGCVGHGLKDCSKEVVKEV
        IDI KPLKR + L+L   G  + +   YERLP++C+ CG VGHG+ +CS    K+V
Subjt:  IDIIKPLKRGMSLTLGAMGEPIWLEFSYERLPDYCFGCGCVGHGLKDCSKEVVKEV

TXG73661.1 hypothetical protein EZV62_002240 [Acer yangbiense]8.7e-1837.67Show/hide
Query:  GLENDAYC---KLLISRSTNADSFRSLIPKIWGLEGRMEIESLERNIFMCYFSNLKDKKSVTEG------------ENGRCRGKVLRLKAKIDIIKPLKR
        G+E+   C   K+L  +  N D+F+ LI +IW   G +EIE +  NIFM YF N +D+  V               E      K +R+  +IDI KPLKR
Subjt:  GLENDAYC---KLLISRSTNADSFRSLIPKIWGLEGRMEIESLERNIFMCYFSNLKDKKSVTEG------------ENGRCRGKVLRLKAKIDIIKPLKR

Query:  GMSLTLGAMGEPIWLEFSYERLPDYCFGCGCVGHGLKDCSKEVVKE
         + L LG   E   +   YERLP++CF CG +GHG+K C  E  ++
Subjt:  GMSLTLGAMGEPIWLEFSYERLPDYCFGCGCVGHGLKDCSKEVVKE

TrEMBL top hitse value%identityAlignment
A0A5C7H421 CCHC-type domain-containing protein1.8e-1628.76Show/hide
Query:  ELDQANGGLENDAYC--KLLISRSTNADSFRSLIPKIWGLEGRMEIESLERNIFMCYFSNLKDKKSV-----------------TEG-------ENGRCR
        E DQ +G  E D     K+L S+  N ++F++LI ++W   G +EIES+  NIFM +F+N  ++  +                  EG       E+  C 
Subjt:  ELDQANGGLENDAYC--KLLISRSTNADSFRSLIPKIWGLEGRMEIESLERNIFMCYFSNLKDKKSV-----------------TEG-------ENGRCR

Query:  GKVLRLKAKIDIIKPLKRGMSLTLGAMGEPIWLEFSYERLPDYCFGCGCVGHGLKDCSKEVVKEVGKTEHRASLRADSVSSCSFSNLGRNPDRNRGSFEF
        GK +++K +IDI KPLKR + L L      + +   YERLP +C+ CG +GH  K+CS E  K         +L+ +S    S+      PDR +   + 
Subjt:  GKVLRLKAKIDIIKPLKRGMSLTLGAMGEPIWLEFSYERLPDYCFGCGCVGHGLKDCSKEVVKEVGKTEHRASLRADSVSSCSFSNLGRNPDRNRGSFEF

Query:  ---GKGRGKNEALFGGSVEIFHCVSRKGDDRRGDLPTQNAAPTSSSKGKEVQLEGSFQKQSGTGNEPLDQNGQKLWLRKSTVSAKKLGKEESGSHIRSPL
           G  + ++  L   S     C+ +    R G   +Q  +PT +  G  ++LEG           P D++  K   +KS V    +GKE SG  +   +
Subjt:  ---GKGRGKNEALFGGSVEIFHCVSRKGDDRRGDLPTQNAAPTSSSKGKEVQLEGSFQKQSGTGNEPLDQNGQKLWLRKSTVSAKKLGKEESGSHIRSPL

Query:  ASEKHT
        ++E  +
Subjt:  ASEKHT

A0A5C7HT25 CCHC-type domain-containing protein7.7e-2035.26Show/hide
Query:  NLEVVDD--ELDQANGGLENDA-----YC---KLLISRSTNADSFRSLIPKIWGLEGRMEIESLERNIFMCYFSNLKDKKSV-----------------T
        NL + D+  E+ Q +GG+EN+      +C   K+L+ R  N ++F+++I ++W   G +EIE +  N+FM YF+NL+D+  V                  
Subjt:  NLEVVDD--ELDQANGGLENDA-----YC---KLLISRSTNADSFRSLIPKIWGLEGRMEIESLERNIFMCYFSNLKDKKSV-----------------T

Query:  EG--------ENGRCRGKVLRLKAKIDIIKPLKRGMSLTLGAMGEPIWLEFSYERLPDYCFGCGCVGHGLKDC
        EG        E+  C GK LR+K +IDI +PLKR + L+L   G  + +   YER+P +C+ CG VGH L +C
Subjt:  EG--------ENGRCRGKVLRLKAKIDIIKPLKRGMSLTLGAMGEPIWLEFSYERLPDYCFGCGCVGHGLKDC

A0A5C7IGB4 CCHC-type domain-containing protein4.7e-1729.14Show/hide
Query:  EEQKCNLEVVDDELDQANGGLENDAYCKLLISRSTNADSFRSLIPKIWGLEGRMEIESLERNIFMCYFSNLKDKKSV---------------------TE
        +E +  LE+ +D   +    ++     K+L  +  N ++F+ LI +IW   G +E+E ++ NIF  +F+N +D   V                       
Subjt:  EEQKCNLEVVDDELDQANGGLENDAYCKLLISRSTNADSFRSLIPKIWGLEGRMEIESLERNIFMCYFSNLKDKKSV---------------------TE

Query:  GENGRCRGKVLRLKAKIDIIKPLKRGMSLTLGAMGEPIWLEFSYERLPDYCFGCGCVGHGLKDCSKEVVKEVGKT
         E+  CRGK +R+K +IDI K L+R + L L    E   +    ERLP++CF CG +GH +++C  E  +    T
Subjt:  GENGRCRGKVLRLKAKIDIIKPLKRGMSLTLGAMGEPIWLEFSYERLPDYCFGCGCVGHGLKDCSKEVVKEVGKT

A0A5C7IV71 CCHC-type domain-containing protein9.4e-1833.97Show/hide
Query:  KLLISRSTNADSFRSLIPKIWGLEGRMEIESLERNIFMCYFSNLKDKKSV--------------------------------TEGENGRCRGKVLRLKAK
        K+L  +  N D+F+S+I  +W   G +EIE +  N+F+ YF+N +D+  V                                   E+  C GK LR+K +
Subjt:  KLLISRSTNADSFRSLIPKIWGLEGRMEIESLERNIFMCYFSNLKDKKSV--------------------------------TEGENGRCRGKVLRLKAK

Query:  IDIIKPLKRGMSLTLGAMGEPIWLEFSYERLPDYCFGCGCVGHGLKDCSKEVVKEV
        IDI KPLKR + L+L   G  + +   YERLP++C+ CG VGHG+ +CS    K+V
Subjt:  IDIIKPLKRGMSLTLGAMGEPIWLEFSYERLPDYCFGCGCVGHGLKDCSKEVVKEV

A0A5C7IWJ4 CCHC-type domain-containing protein4.2e-1837.67Show/hide
Query:  GLENDAYC---KLLISRSTNADSFRSLIPKIWGLEGRMEIESLERNIFMCYFSNLKDKKSVTEG------------ENGRCRGKVLRLKAKIDIIKPLKR
        G+E+   C   K+L  +  N D+F+ LI +IW   G +EIE +  NIFM YF N +D+  V               E      K +R+  +IDI KPLKR
Subjt:  GLENDAYC---KLLISRSTNADSFRSLIPKIWGLEGRMEIESLERNIFMCYFSNLKDKKSVTEG------------ENGRCRGKVLRLKAKIDIIKPLKR

Query:  GMSLTLGAMGEPIWLEFSYERLPDYCFGCGCVGHGLKDCSKEVVKE
         + L LG   E   +   YERLP++CF CG +GHG+K C  E  ++
Subjt:  GMSLTLGAMGEPIWLEFSYERLPDYCFGCGCVGHGLKDCSKEVVKE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAAGGGACATATATTTTCAACTCCAGGGTATGCATATTACAGAAGAAGAGCAAAAATGCAACCTGGAAGTTGTTGATGATGAGCTAGACCAAGCAAATGGAGGGCT
TGAAAATGACGCTTACTGCAAACTTCTTATCTCCAGATCTACAAATGCAGACTCGTTTCGTTCCTTAATACCAAAAATTTGGGGGCTTGAGGGCAGAATGGAGATTGAGT
CACTAGAGAGGAATATTTTCATGTGCTATTTCTCAAATCTGAAGGATAAGAAAAGCGTGACAGAAGGAGAAAATGGGAGATGTAGGGGTAAGGTTTTGAGGTTAAAAGCA
AAGATTGACATTATTAAGCCTTTAAAAAGGGGAATGAGTTTAACTTTGGGAGCTATGGGAGAACCAATTTGGTTGGAGTTCTCATATGAGAGATTACCTGACTACTGTTT
TGGTTGTGGCTGTGTTGGGCATGGTTTGAAAGATTGCTCAAAGGAAGTTGTTAAGGAGGTGGGGAAAACAGAGCATAGAGCTTCTCTTAGGGCAGATTCTGTTAGCAGCT
GTTCCTTTTCAAATCTTGGAAGAAACCCAGATAGAAACAGGGGTAGTTTCGAATTCGGAAAAGGAAGAGGGAAAAATGAAGCGCTGTTTGGAGGTTCCGTGGAGATCTTT
CATTGTGTTTCAAGAAAAGGAGATGATCGGAGGGGCGATCTGCCTACCCAGAATGCAGCTCCGACGAGCTCGTCGAAAGGGAAAGAGGTACAGTTAGAAGGGTCTTTTCA
AAAACAGTCGGGAACAGGAAATGAGCCGTTAGATCAAAATGGTCAGAAATTATGGCTGAGGAAGAGTACAGTTTCAGCGAAGAAGTTGGGAAAAGAAGAGTCGGGTTCTC
ATATACGATCCCCCTTGGCTAGTGAAAAGCACACTGAAAACATTGAGTACAGGTCAATTGGGCCGTGCAAACAAGACATTCTTCAAAGCCCAATTGTATGTGATAGAAAG
GAAATGGGGCCAAAAAGGGTAGGGGTTGGTCTATCAGGCGGTGGAGACGGTGGAGAGTCTGAGATTGGGGCAAAGAATTTACCAATTTCTAATTCAAGCTCTTTAATTTT
AAATGATGGTTTGGAAGCATCTGTTTTGATACGGGGGAGGATTAATAAAGAGGAAATTGAATTTGGAATGGGTTTTAAACCGGGGGATGAAGTAGTCAAGAAGGAAGACA
AGATGGTTGAGGATTCTACTTTAAAAAATAAAAGCCTGAAATGCCGGAAGAGGAAAGCAAGGAATTTGGGCAAAGATAGTAATGTTGAGGATCCTTTGAAATCAAAGGAT
TTGAAAATCAAGTTACTTGGAAAACATTACTTAGAGGCTGAAGGAAATTTTGAGGGGGCGAAGAAGTTAAAAGAGGATTACGTTGCCAGTGGCGATGGGATATCGGTGGA
GGCTGAAAGTCAACCCTTGCCGGATGCAATGAAAACCCTTTTGTTGGAATGCTCGGGGGTTGGGAAACTCTCGAGCCATGAGAGCACTTTGTCATGA
mRNA sequenceShow/hide mRNA sequence
ATGGAAAGGGACATATATTTTCAACTCCAGGGTATGCATATTACAGAAGAAGAGCAAAAATGCAACCTGGAAGTTGTTGATGATGAGCTAGACCAAGCAAATGGAGGGCT
TGAAAATGACGCTTACTGCAAACTTCTTATCTCCAGATCTACAAATGCAGACTCGTTTCGTTCCTTAATACCAAAAATTTGGGGGCTTGAGGGCAGAATGGAGATTGAGT
CACTAGAGAGGAATATTTTCATGTGCTATTTCTCAAATCTGAAGGATAAGAAAAGCGTGACAGAAGGAGAAAATGGGAGATGTAGGGGTAAGGTTTTGAGGTTAAAAGCA
AAGATTGACATTATTAAGCCTTTAAAAAGGGGAATGAGTTTAACTTTGGGAGCTATGGGAGAACCAATTTGGTTGGAGTTCTCATATGAGAGATTACCTGACTACTGTTT
TGGTTGTGGCTGTGTTGGGCATGGTTTGAAAGATTGCTCAAAGGAAGTTGTTAAGGAGGTGGGGAAAACAGAGCATAGAGCTTCTCTTAGGGCAGATTCTGTTAGCAGCT
GTTCCTTTTCAAATCTTGGAAGAAACCCAGATAGAAACAGGGGTAGTTTCGAATTCGGAAAAGGAAGAGGGAAAAATGAAGCGCTGTTTGGAGGTTCCGTGGAGATCTTT
CATTGTGTTTCAAGAAAAGGAGATGATCGGAGGGGCGATCTGCCTACCCAGAATGCAGCTCCGACGAGCTCGTCGAAAGGGAAAGAGGTACAGTTAGAAGGGTCTTTTCA
AAAACAGTCGGGAACAGGAAATGAGCCGTTAGATCAAAATGGTCAGAAATTATGGCTGAGGAAGAGTACAGTTTCAGCGAAGAAGTTGGGAAAAGAAGAGTCGGGTTCTC
ATATACGATCCCCCTTGGCTAGTGAAAAGCACACTGAAAACATTGAGTACAGGTCAATTGGGCCGTGCAAACAAGACATTCTTCAAAGCCCAATTGTATGTGATAGAAAG
GAAATGGGGCCAAAAAGGGTAGGGGTTGGTCTATCAGGCGGTGGAGACGGTGGAGAGTCTGAGATTGGGGCAAAGAATTTACCAATTTCTAATTCAAGCTCTTTAATTTT
AAATGATGGTTTGGAAGCATCTGTTTTGATACGGGGGAGGATTAATAAAGAGGAAATTGAATTTGGAATGGGTTTTAAACCGGGGGATGAAGTAGTCAAGAAGGAAGACA
AGATGGTTGAGGATTCTACTTTAAAAAATAAAAGCCTGAAATGCCGGAAGAGGAAAGCAAGGAATTTGGGCAAAGATAGTAATGTTGAGGATCCTTTGAAATCAAAGGAT
TTGAAAATCAAGTTACTTGGAAAACATTACTTAGAGGCTGAAGGAAATTTTGAGGGGGCGAAGAAGTTAAAAGAGGATTACGTTGCCAGTGGCGATGGGATATCGGTGGA
GGCTGAAAGTCAACCCTTGCCGGATGCAATGAAAACCCTTTTGTTGGAATGCTCGGGGGTTGGGAAACTCTCGAGCCATGAGAGCACTTTGTCATGA
Protein sequenceShow/hide protein sequence
MERDIYFQLQGMHITEEEQKCNLEVVDDELDQANGGLENDAYCKLLISRSTNADSFRSLIPKIWGLEGRMEIESLERNIFMCYFSNLKDKKSVTEGENGRCRGKVLRLKA
KIDIIKPLKRGMSLTLGAMGEPIWLEFSYERLPDYCFGCGCVGHGLKDCSKEVVKEVGKTEHRASLRADSVSSCSFSNLGRNPDRNRGSFEFGKGRGKNEALFGGSVEIF
HCVSRKGDDRRGDLPTQNAAPTSSSKGKEVQLEGSFQKQSGTGNEPLDQNGQKLWLRKSTVSAKKLGKEESGSHIRSPLASEKHTENIEYRSIGPCKQDILQSPIVCDRK
EMGPKRVGVGLSGGGDGGESEIGAKNLPISNSSSLILNDGLEASVLIRGRINKEEIEFGMGFKPGDEVVKKEDKMVEDSTLKNKSLKCRKRKARNLGKDSNVEDPLKSKD
LKIKLLGKHYLEAEGNFEGAKKLKEDYVASGDGISVEAESQPLPDAMKTLLLECSGVGKLSSHESTLS