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Sed0012550 (gene) of Chayote v1 genome

Gene IDSed0012550
OrganismSechium edule (Chayote v1)
DescriptionHistone deacetylase 18-like protein
Genome locationLG13:25246497..25247261
RNA-Seq ExpressionSed0012550
SyntenySed0012550
Gene Ontology termsGO:0050896 - response to stimulus (biological process)
GO:0043231 - intracellular membrane-bounded organelle (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6608173.1 hypothetical protein SDJN03_01515, partial [Cucurbita argyrosperma subsp. sororia]1.0e-4671.13Show/hide
Query:  MALRINCSSSLFLLPRAPHSNSFDSTKSARLSQKEDEGSWRIRSRSRCRCALGLASLILAIELGDVFVGGESQALESAPQLVESRRAKILRWSDKRNCDP
        M L INCSSS+ LLPRAP SNSFDS+K ARLS K+D G+WRIRS    RCALGLASLILAIE GDV V  E+QALES PQ+V+SRR KI RWSDKR C  
Subjt:  MALRINCSSSLFLLPRAPHSNSFDSTKSARLSQKEDEGSWRIRSRSRCRCALGLASLILAIELGDVFVGGESQALESAPQLVESRRAKILRWSDKRNCDP

Query:  WRAKSFEIIVPENLPRPSQRRKWEAISFTEAENAPEILQVNN
        WRA S EIIVPENLPRPSQRRKWE I+FT+ ENAP +  +++
Subjt:  WRAKSFEIIVPENLPRPSQRRKWEAISFTEAENAPEILQVNN

KAG7031813.1 hypothetical protein SDJN02_05854 [Cucurbita argyrosperma subsp. argyrosperma]3.8e-4672.99Show/hide
Query:  MALRINCSSSLFLLPRAPHSNSFDSTKSARLSQKEDEGSWRIRSRSRCRCALGLASLILAIELGDVFVGGESQALESAPQLVESRRAKILRWSDKRNCDP
        M   INCSSS+ LLPRAP SNSFDS+K ARLS K+D G+WRIRS    RCALGLASLILAIE GDV V  E+QALES PQ+V+SRR KI RWSDKR C  
Subjt:  MALRINCSSSLFLLPRAPHSNSFDSTKSARLSQKEDEGSWRIRSRSRCRCALGLASLILAIELGDVFVGGESQALESAPQLVESRRAKILRWSDKRNCDP

Query:  WRAKSFEIIVPENLPRPSQRRKWEAISFTEAENAPEI
        WRA S EIIVPENLPRPSQRRKWE I+FT+ ENAP +
Subjt:  WRAKSFEIIVPENLPRPSQRRKWEAISFTEAENAPEI

XP_022138217.1 uncharacterized protein LOC111009442 isoform X1 [Momordica charantia]8.5e-4667.31Show/hide
Query:  MALRINCSSSLFLLPRAPHSNSFDSTKSARLSQKEDEGSWRIRSRSRCRCALGLASLILAIELGDVFVGGESQALES--APQLVESRRAKILRWSDKRNC
        MALR+NCS+S+FLLPRAP SNSFD++K+ARLS KE EGSW      R RCALGLASLILAIE G+ FV GE QALES   PQLV+SRR KI RWSDKR C
Subjt:  MALRINCSSSLFLLPRAPHSNSFDSTKSARLSQKEDEGSWRIRSRSRCRCALGLASLILAIELGDVFVGGESQALES--APQLVESRRAKILRWSDKRNC

Query:  DPWRAKSFEIIVPENLPRPSQRRKWEAISFT--EAENAP--EILQVNNSSKNCFSL
         PWRA S E IVPENLPRPSQRRKWE ++FT     NAP  +++    +SK CFSL
Subjt:  DPWRAKSFEIIVPENLPRPSQRRKWEAISFT--EAENAP--EILQVNNSSKNCFSL

XP_022981718.1 uncharacterized protein LOC111480783 [Cucurbita maxima]1.3e-4672.99Show/hide
Query:  MALRINCSSSLFLLPRAPHSNSFDSTKSARLSQKEDEGSWRIRSRSRCRCALGLASLILAIELGDVFVGGESQALESAPQLVESRRAKILRWSDKRNCDP
        M L INCSSS+ LLPRAP SNSFDS+K ARLS K+D G+WRIRS    RCALGLASLILAIE GD+ V  E+QALES PQ+V+SRR KI RWSDKR C  
Subjt:  MALRINCSSSLFLLPRAPHSNSFDSTKSARLSQKEDEGSWRIRSRSRCRCALGLASLILAIELGDVFVGGESQALESAPQLVESRRAKILRWSDKRNCDP

Query:  WRAKSFEIIVPENLPRPSQRRKWEAISFTEAENAPEI
        WRA S EIIVPENLPRPSQRRKWE I+FT+ ENAP +
Subjt:  WRAKSFEIIVPENLPRPSQRRKWEAISFTEAENAPEI

XP_023524416.1 uncharacterized protein LOC111788320 [Cucurbita pepo subsp. pepo]2.8e-4971.05Show/hide
Query:  MALRINCSSSLFLLPRAPHSNSFDSTKSARLSQKEDEGSWRIRSRSRCRCALGLASLILAIELGDVFVGGESQALESAPQLVESRRAKILRWSDKRNCDP
        M L INCSSS+ LLPRAP SNSFDS+K ARLS K+D+G+WRIRS    RCALGLASLILAIE GDV V  E+QALES PQ+V+SRR KI RWSDKR C  
Subjt:  MALRINCSSSLFLLPRAPHSNSFDSTKSARLSQKEDEGSWRIRSRSRCRCALGLASLILAIELGDVFVGGESQALESAPQLVESRRAKILRWSDKRNCDP

Query:  WRAKSFEIIVPENLPRPSQRRKWEAISFTEAENAPEILQVNN--SSKNCFSL
        WRA S EIIVPENLPRPSQRRKWEAI+FT+ ENAP +  +++   SK CFSL
Subjt:  WRAKSFEIIVPENLPRPSQRRKWEAISFTEAENAPEILQVNN--SSKNCFSL

TrEMBL top hitse value%identityAlignment
A0A0A0LDQ8 Uncharacterized protein3.7e-3961.45Show/hide
Query:  MALRINC-SSSLFLLPRAPHSNSFDSTKSARLSQKEDEGSWRIRSRSRCRCALGLASLILAIELGDVFVGGESQALESAPQLVES------RRAKILRWS
        MALRINC SSSL LLP+APHSNSF STKS++LS KEDE SWR R   R  CALGLASLI AIE+ DVF+  ES A+ES PQ++        R  KI RWS
Subjt:  MALRINC-SSSLFLLPRAPHSNSFDSTKSARLSQKEDEGSWRIRSRSRCRCALGLASLILAIELGDVFVGGESQALESAPQLVES------RRAKILRWS

Query:  DK-RNCDPWRAKSFEIIVPENLPRPSQRRKWEAISFTE----AENAPEILQVN----NSSKNCFSL
        DK R C PWRA S EIIVPENLPR SQRRKWE I++ E     +NAP  +QV+    +S   CFSL
Subjt:  DK-RNCDPWRAKSFEIIVPENLPRPSQRRKWEAISFTE----AENAPEILQVN----NSSKNCFSL

A0A5A7TBN7 Uncharacterized protein2.2e-3963.35Show/hide
Query:  MALRINC-SSSLFLLPRAPHSNSFDSTKSARLSQKEDEGSWRIRSRSRCRCALGLASLILAIELGDVFVGGESQALESAPQLVE----SRRAKILRWSDK
        MAL INC SSS+FLLP+ PH NSFDSTK+A+L  KED GSW    RSR  CALGLASLI AIE+GDVF+  ES ALES+PQLV+     R  KI RWSD+
Subjt:  MALRINC-SSSLFLLPRAPHSNSFDSTKSARLSQKEDEGSWRIRSRSRCRCALGLASLILAIELGDVFVGGESQALESAPQLVE----SRRAKILRWSDK

Query:  -RNCDPWRAKSFEIIVPENLPRPSQRRKWEAISF---TEAENAP--EILQVNNSSKNCFSL
         R C PWRAKS EIIVPENLPRPSQRRK EAI++      +NAP  +++    SS  CFSL
Subjt:  -RNCDPWRAKSFEIIVPENLPRPSQRRKWEAISF---TEAENAP--EILQVNNSSKNCFSL

A0A6J1CAG3 uncharacterized protein LOC111009442 isoform X14.1e-4667.31Show/hide
Query:  MALRINCSSSLFLLPRAPHSNSFDSTKSARLSQKEDEGSWRIRSRSRCRCALGLASLILAIELGDVFVGGESQALES--APQLVESRRAKILRWSDKRNC
        MALR+NCS+S+FLLPRAP SNSFD++K+ARLS KE EGSW      R RCALGLASLILAIE G+ FV GE QALES   PQLV+SRR KI RWSDKR C
Subjt:  MALRINCSSSLFLLPRAPHSNSFDSTKSARLSQKEDEGSWRIRSRSRCRCALGLASLILAIELGDVFVGGESQALES--APQLVESRRAKILRWSDKRNC

Query:  DPWRAKSFEIIVPENLPRPSQRRKWEAISFT--EAENAP--EILQVNNSSKNCFSL
         PWRA S E IVPENLPRPSQRRKWE ++FT     NAP  +++    +SK CFSL
Subjt:  DPWRAKSFEIIVPENLPRPSQRRKWEAISFT--EAENAP--EILQVNNSSKNCFSL

A0A6J1CAH3 uncharacterized protein LOC111009442 isoform X28.6e-4470.92Show/hide
Query:  MALRINCSSSLFLLPRAPHSNSFDSTKSARLSQKEDEGSWRIRSRSRCRCALGLASLILAIELGDVFVGGESQALES--APQLVESRRAKILRWSDKRNC
        MALR+NCS+S+FLLPRAP SNSFD++K+ARLS KE EGSW      R RCALGLASLILAIE G+ FV GE QALES   PQLV+SRR KI RWSDKR C
Subjt:  MALRINCSSSLFLLPRAPHSNSFDSTKSARLSQKEDEGSWRIRSRSRCRCALGLASLILAIELGDVFVGGESQALES--APQLVESRRAKILRWSDKRNC

Query:  DPWRAKSFEIIVPENLPRPSQRRKWEAISFT--EAENAPEI
         PWRA S E IVPENLPRPSQRRKWE ++FT     NAP I
Subjt:  DPWRAKSFEIIVPENLPRPSQRRKWEAISFT--EAENAPEI

A0A6J1J2V8 uncharacterized protein LOC1114807836.4e-4772.99Show/hide
Query:  MALRINCSSSLFLLPRAPHSNSFDSTKSARLSQKEDEGSWRIRSRSRCRCALGLASLILAIELGDVFVGGESQALESAPQLVESRRAKILRWSDKRNCDP
        M L INCSSS+ LLPRAP SNSFDS+K ARLS K+D G+WRIRS    RCALGLASLILAIE GD+ V  E+QALES PQ+V+SRR KI RWSDKR C  
Subjt:  MALRINCSSSLFLLPRAPHSNSFDSTKSARLSQKEDEGSWRIRSRSRCRCALGLASLILAIELGDVFVGGESQALESAPQLVESRRAKILRWSDKRNCDP

Query:  WRAKSFEIIVPENLPRPSQRRKWEAISFTEAENAPEI
        WRA S EIIVPENLPRPSQRRKWE I+FT+ ENAP +
Subjt:  WRAKSFEIIVPENLPRPSQRRKWEAISFTEAENAPEI

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G25625.1 unknown protein4.3e-1132.28Show/hide
Query:  MALRINCSSSLFLLPRAPHSNSFDSTKS-----ARLSQKEDEGSWRIRSRSRCRCALGLASLIL--AIELGDVFVGGESQALESAPQLVESRRAKILRWS
        MA RI+C  +L  L     SNS  S  S     +++S +  E     R +++C   LG+A+ ++   I++ DV    E+  ++S  + + +      RWS
Subjt:  MALRINCSSSLFLLPRAPHSNSFDSTKS-----ARLSQKEDEGSWRIRSRSRCRCALGLASLIL--AIELGDVFVGGESQALESAPQLVESRRAKILRWS

Query:  DKRNCDPWRAKSFEIIVPENLPRPSQRRKWEAISFTEAENAP-EILQVNNSSKNCFSL
        DKR C PW   S E IVPENLPRPS  R+ E     + +  P  ++    +   CFS+
Subjt:  DKRNCDPWRAKSFEIIVPENLPRPSQRRKWEAISFTEAENAP-EILQVNNSSKNCFSL

AT2G25625.2 unknown protein5.0e-1231.01Show/hide
Query:  MALRINCSSSLFLLPRAPHSNSFDSTKSARLSQKEDEGSWRIRS-----RSRCRCALGLASLIL--AIELGDVFVGGESQALESAPQLVESRRAKILRWS
        MA RI+C  +L      P  +S  +   A L +   + SWR  +     +++C   LG+A+ ++   I++ DV    E+  ++S  + + +      RWS
Subjt:  MALRINCSSSLFLLPRAPHSNSFDSTKSARLSQKEDEGSWRIRS-----RSRCRCALGLASLIL--AIELGDVFVGGESQALESAPQLVESRRAKILRWS

Query:  DKRNCDPWRAKSFEIIVPENLPRPSQRRKWEAISFTEAENAP-EILQVNNSSKNCFSL
        DKR C PW   S E IVPENLPRPS  R+ E     + +  P  ++    +   CFS+
Subjt:  DKRNCDPWRAKSFEIIVPENLPRPSQRRKWEAISFTEAENAP-EILQVNNSSKNCFSL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTTTGCGAATCAATTGTTCATCTTCACTATTTCTCCTTCCTCGGGCTCCACATTCAAATTCCTTCGATTCTACAAAATCTGCTCGATTATCTCAGAAGGAAGATGA
AGGATCATGGAGAATCCGAAGCCGAAGCCGATGCCGATGCGCTTTAGGTTTAGCGAGCTTGATTCTCGCAATCGAACTGGGCGACGTGTTCGTAGGCGGCGAATCTCAGG
CCCTGGAATCGGCGCCGCAACTGGTGGAATCTCGGCGTGCGAAGATCTTGAGATGGAGCGACAAGAGAAATTGCGATCCGTGGAGAGCGAAATCGTTCGAGATCATCGTG
CCGGAGAATCTGCCGAGGCCGTCGCAGCGCCGGAAGTGGGAGGCGATTTCGTTCACGGAAGCGGAGAACGCTCCGGAAATACTCCAAGTAAATAATTCTTCTAAAAACTG
TTTCTCTTTATGA
mRNA sequenceShow/hide mRNA sequence
AACGAAACAGAGAAATGGCTTTGCGAATCAATTGTTCATCTTCACTATTTCTCCTTCCTCGGGCTCCACATTCAAATTCCTTCGATTCTACAAAATCTGCTCGATTATCT
CAGAAGGAAGATGAAGGATCATGGAGAATCCGAAGCCGAAGCCGATGCCGATGCGCTTTAGGTTTAGCGAGCTTGATTCTCGCAATCGAACTGGGCGACGTGTTCGTAGG
CGGCGAATCTCAGGCCCTGGAATCGGCGCCGCAACTGGTGGAATCTCGGCGTGCGAAGATCTTGAGATGGAGCGACAAGAGAAATTGCGATCCGTGGAGAGCGAAATCGT
TCGAGATCATCGTGCCGGAGAATCTGCCGAGGCCGTCGCAGCGCCGGAAGTGGGAGGCGATTTCGTTCACGGAAGCGGAGAACGCTCCGGAAATACTCCAAGTAAATAAT
TCTTCTAAAAACTGTTTCTCTTTATGAATCGCATATCGTGTAGTGTAGATTGTAGATTGTAAATCTGTTTTTATCAATCACTCCACTTCAATGGCGATTCGGTGAC
Protein sequenceShow/hide protein sequence
MALRINCSSSLFLLPRAPHSNSFDSTKSARLSQKEDEGSWRIRSRSRCRCALGLASLILAIELGDVFVGGESQALESAPQLVESRRAKILRWSDKRNCDPWRAKSFEIIV
PENLPRPSQRRKWEAISFTEAENAPEILQVNNSSKNCFSL