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Sed0012558 (gene) of Chayote v1 genome

Gene IDSed0012558
OrganismSechium edule (Chayote v1)
DescriptionCCHC-type domain-containing protein
Genome locationLG10:5067110..5068309
RNA-Seq ExpressionSed0012558
SyntenySed0012558
Gene Ontology termsNA
InterPro domainsIPR025836 - Zinc knuckle CX2CX4HX4C


Homology Show/hide homology
GenBank top hitse value%identityAlignment
TXG51459.1 hypothetical protein EZV62_023983 [Acer yangbiense]3.2e-1030.51Show/hide
Query:  MMENLDLAEQEAQGVFELEDNNISNYEKELGCVVACKIFSEVLFSPDALKKLIPKIWNIDQKVTLESEGGD----------QRNR---------------
        + ENL LA+++   + E+ + +  + E E+   +  KI S    + +A K LI ++W+    V +ES G +          +RNR               
Subjt:  MMENLDLAEQEAQGVFELEDNNISNYEKELGCVVACKIFSEVLFSPDALKKLIPKIWNIDQKVTLESEGGD----------QRNR---------------

Query:  -------------------GKFLRVKVLIDIRLPLRRALKLKSGAMAPEKWVRLSYEKLPEFCRGCGRVGHLEMNCS
                           GKF++VKV IDI  PL+R L+LK         V L YE+LP+FC  CGR+GH   NCS
Subjt:  -------------------GKFLRVKVLIDIRLPLRRALKLKSGAMAPEKWVRLSYEKLPEFCRGCGRVGHLEMNCS

TXG54824.1 hypothetical protein EZV62_020080 [Acer yangbiense]5.2e-1332.68Show/hide
Query:  MMENLDLAEQEAQGVFELEDNNISNYEKELGCVVACKIFSEVLFSPDALKKLIPKIWNIDQKV-----TLESEGGDQRNRGKFLRVKVLIDIRLPLRRAL
        + ENL +AE++   V E  +  I +  K++ C +  K+ +    + +A + LI +IW+   +V      +E     +   GKF+RVKV IDI   LRR L
Subjt:  MMENLDLAEQEAQGVFELEDNNISNYEKELGCVVACKIFSEVLFSPDALKKLIPKIWNIDQKV-----TLESEGGDQRNRGKFLRVKVLIDIRLPLRRAL

Query:  KLKSGAMAPEKWVRLSYEKLPEFCRGCGRVGHLEMNCSFVVIG----EGIPFPFGEELREPTS---HFRGEKPLIQRQGGRGRGRGRGREEDVRAENSRC
        +LK G       V L YE+LPEFC  CGRVGH  + C  V       E  P  +G  L+  T    ++R      +    RGR     RE +     S  
Subjt:  KLKSGAMAPEKWVRLSYEKLPEFCRGCGRVGHLEMNCSFVVIG----EGIPFPFGEELREPTS---HFRGEKPLIQRQGGRGRGRGRGREEDVRAENSRC

Query:  GEDLV
        G  LV
Subjt:  GEDLV

TXG73661.1 hypothetical protein EZV62_002240 [Acer yangbiense]4.9e-1133.16Show/hide
Query:  MMENLDLAEQEAQGVFELEDNNISNYEKELGCVVACKIFSEVLFSPDALKKLIPKIWNIDQKVTLESEG----------GDQRNR---------------
        + ENL LA+++       E+  I   E    C+V  K+ +E   + DA K LI +IWN    V +E  G           + RN+               
Subjt:  MMENLDLAEQEAQGVFELEDNNISNYEKELGCVVACKIFSEVLFSPDALKKLIPKIWNIDQKVTLESEG----------GDQRNR---------------

Query:  -------GKFLRVKVLIDIRLPLRRALKLKSGAMAPEKWVRLSYEKLPEFCRGCGRVGHLEMNC----SFVVIGEGIPFPFGEELREPTS
                KF+RV V IDI  PL+R LKLK G       V L YE+LPEFC  CGR+GH    C    +     EG P  FG  L+   S
Subjt:  -------GKFLRVKVLIDIRLPLRRALKLKSGAMAPEKWVRLSYEKLPEFCRGCGRVGHLEMNC----SFVVIGEGIPFPFGEELREPTS

XP_039815364.1 uncharacterized protein LOC120678302 [Panicum virgatum]9.9e-1243.64Show/hide
Query:  DQRNRGKFLRVKVLIDIRLPLRRALKLKSGAMAPEKWVRLSYEKLPEFCRGCGRVGHLEMNCSFVVIGEGIPFPFGEELR--EPTSHFRGEKPLIQ--RQ
        D+   G+FLRVKV I+I  PLRR + +  G  A E+W  ++YE LP+FC  CGR+GH +  C    +  G   PFG ELR   P   F GE    Q  R+
Subjt:  DQRNRGKFLRVKVLIDIRLPLRRALKLKSGAMAPEKWVRLSYEKLPEFCRGCGRVGHLEMNCSFVVIGEGIPFPFGEELR--EPTSHFRGEKPLIQ--RQ

Query:  GGRGRGRGRG
         G GR  G G
Subjt:  GGRGRGRGRG

XP_039827601.1 uncharacterized protein LOC120689378 [Panicum virgatum]6.4e-1144.76Show/hide
Query:  GKFLRVKVLIDIRLPLRRALKLKSGAMAPEKWVRLSYEKLPEFCRGCGRVGHLEMNCSFVVIGEGIPFPFGEELR--EPTSHFRGEKPLIQ--RQGGRGR
        G+FLRVKV I+I  PLRR + +  G  A E+W  ++YE LP+FC  CGR+GH +  C   +  E    PFG ELR   P   F GE    Q  R+ G GR
Subjt:  GKFLRVKVLIDIRLPLRRALKLKSGAMAPEKWVRLSYEKLPEFCRGCGRVGHLEMNCSFVVIGEGIPFPFGEELR--EPTSHFRGEKPLIQ--RQGGRGR

Query:  GRGRG
          G G
Subjt:  GRGRG

TrEMBL top hitse value%identityAlignment
A0A5C7HCW1 CCHC-type domain-containing protein2.5e-1332.68Show/hide
Query:  MMENLDLAEQEAQGVFELEDNNISNYEKELGCVVACKIFSEVLFSPDALKKLIPKIWNIDQKV-----TLESEGGDQRNRGKFLRVKVLIDIRLPLRRAL
        + ENL +AE++   V E  +  I +  K++ C +  K+ +    + +A + LI +IW+   +V      +E     +   GKF+RVKV IDI   LRR L
Subjt:  MMENLDLAEQEAQGVFELEDNNISNYEKELGCVVACKIFSEVLFSPDALKKLIPKIWNIDQKV-----TLESEGGDQRNRGKFLRVKVLIDIRLPLRRAL

Query:  KLKSGAMAPEKWVRLSYEKLPEFCRGCGRVGHLEMNCSFVVIG----EGIPFPFGEELREPTS---HFRGEKPLIQRQGGRGRGRGRGREEDVRAENSRC
        +LK G       V L YE+LPEFC  CGRVGH  + C  V       E  P  +G  L+  T    ++R      +    RGR     RE +     S  
Subjt:  KLKSGAMAPEKWVRLSYEKLPEFCRGCGRVGHLEMNCSFVVIG----EGIPFPFGEELREPTS---HFRGEKPLIQRQGGRGRGRGRGREEDVRAENSRC

Query:  GEDLV
        G  LV
Subjt:  GEDLV

A0A5C7IWJ4 CCHC-type domain-containing protein2.4e-1133.16Show/hide
Query:  MMENLDLAEQEAQGVFELEDNNISNYEKELGCVVACKIFSEVLFSPDALKKLIPKIWNIDQKVTLESEG----------GDQRNR---------------
        + ENL LA+++       E+  I   E    C+V  K+ +E   + DA K LI +IWN    V +E  G           + RN+               
Subjt:  MMENLDLAEQEAQGVFELEDNNISNYEKELGCVVACKIFSEVLFSPDALKKLIPKIWNIDQKVTLESEG----------GDQRNR---------------

Query:  -------GKFLRVKVLIDIRLPLRRALKLKSGAMAPEKWVRLSYEKLPEFCRGCGRVGHLEMNC----SFVVIGEGIPFPFGEELREPTS
                KF+RV V IDI  PL+R LKLK G       V L YE+LPEFC  CGR+GH    C    +     EG P  FG  L+   S
Subjt:  -------GKFLRVKVLIDIRLPLRRALKLKSGAMAPEKWVRLSYEKLPEFCRGCGRVGHLEMNC----SFVVIGEGIPFPFGEELREPTS

A0A803LAB8 Uncharacterized protein1.1e-1142.06Show/hide
Query:  LESEGGDQRNRGKFLRVKVLIDIRLPLRRALKLKSGAMAPEKWVRLSYEKLPEFCRGCGRVGHLEMNCSF----VVIGEGIPFPFGEELR-EPTSHFRGE
        LE++  D    G+FLR+KV+IDI  PLRR L L +G  +  KWV L YE+L EFC  CGR+ H EM CSF      +   I + +G  LR  P    R  
Subjt:  LESEGGDQRNRGKFLRVKVLIDIRLPLRRALKLKSGAMAPEKWVRLSYEKLPEFCRGCGRVGHLEMNCSF----VVIGEGIPFPFGEELR-EPTSHFRGE

Query:  KPLIQRQ
        +  I+++
Subjt:  KPLIQRQ

A0A803MH24 Uncharacterized protein5.7e-1328.75Show/hide
Query:  NLDLAEQEAQGVFE-LEDNNISNYEKELGCVVACKIFSEVLFSPDALKKLIPKIWNIDQKVTLESEGGDQRNRGKFLRVKVLIDIRLPLRRALKLKSGAM
        NL L E E++ V E  E  +  + + ++   +  K+ +   ++ +A+K+ +  +W +   V +  +         FLR+K+L+DI  PLRR L++ +G+ 
Subjt:  NLDLAEQEAQGVFE-LEDNNISNYEKELGCVVACKIFSEVLFSPDALKKLIPKIWNIDQKVTLESEGGDQRNRGKFLRVKVLIDIRLPLRRALKLKSGAM

Query:  APEKWVRLSYEKLPEFCRGCGRVGHLEMNCSFV---VIGEGIPFPFGEEL-REPTSHFRG
        +P +W  + YE+L +FC  CGR+ H ++ C FV   V+ + + + +G  L   P    RG
Subjt:  APEKWVRLSYEKLPEFCRGCGRVGHLEMNCSFV---VIGEGIPFPFGEEL-REPTSHFRG

A0A803MH25 Uncharacterized protein5.7e-1328.75Show/hide
Query:  NLDLAEQEAQGVFE-LEDNNISNYEKELGCVVACKIFSEVLFSPDALKKLIPKIWNIDQKVTLESEGGDQRNRGKFLRVKVLIDIRLPLRRALKLKSGAM
        NL L E E++ V E  E  +  + + ++   +  K+ +   ++ +A+K+ +  +W +   V +  +         FLR+K+L+DI  PLRR L++ +G+ 
Subjt:  NLDLAEQEAQGVFE-LEDNNISNYEKELGCVVACKIFSEVLFSPDALKKLIPKIWNIDQKVTLESEGGDQRNRGKFLRVKVLIDIRLPLRRALKLKSGAM

Query:  APEKWVRLSYEKLPEFCRGCGRVGHLEMNCSFV---VIGEGIPFPFGEEL-REPTSHFRG
        +P +W  + YE+L +FC  CGR+ H ++ C FV   V+ + + + +G  L   P    RG
Subjt:  APEKWVRLSYEKLPEFCRGCGRVGHLEMNCSFV---VIGEGIPFPFGEEL-REPTSHFRG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATGGAAAATTTGGACTTAGCTGAGCAGGAGGCCCAAGGGGTCTTTGAACTCGAGGATAACAATATCTCAAACTATGAAAAGGAGCTGGGTTGTGTGGTGGCGTGCAA
GATTTTTTCGGAGGTTCTGTTCAGCCCAGATGCGTTAAAAAAACTCATTCCAAAAATATGGAACATAGATCAAAAGGTTACTCTGGAATCAGAGGGAGGGGATCAAAGAA
ATAGGGGAAAATTTCTGAGAGTAAAGGTGTTGATTGACATTCGTTTACCTTTGAGAAGAGCCTTGAAATTGAAGAGCGGGGCTATGGCACCTGAGAAATGGGTGCGTTTA
TCCTATGAAAAACTGCCTGAGTTCTGTCGAGGTTGTGGAAGAGTCGGCCATTTAGAGATGAATTGCAGTTTTGTGGTCATTGGTGAGGGCATCCCATTTCCTTTTGGAGA
GGAGTTGAGAGAACCAACAAGCCATTTTAGGGGAGAAAAACCTTTAATTCAGAGACAAGGAGGACGAGGAAGAGGTCGCGGAAGAGGTCGAGAAGAAGATGTTCGAGCAG
AAAACTCAAGGTGTGGAGAAGATCTTGTAGAGGAAGAAGCTGTTGCTGCACCAACAAGGGAGGAGAGGCAGTTTCCGATGGATCTTGAGCGGAGAATGGCCGGAAACGGC
TACTCGGGTGCTGCCTCGGGAGCTCGCAATTCGAAAGGTCAAATTCAATCTGAGGGCTTTGCAGAATTTGGGGGCAAGTCAGGTACGGAGTTGGAAGATGATATTATCAT
AAGGAAAAATCGTGAAAAATTTGGAGGAAATAAGGGACACGTGGCGGAGGATGATAAGGTCGTAACTAATGAAAAGGGGAAAAGTAAAGTTGTTATGGAAGGGAGGAATG
AATTACTATTTGGCCCTTTTGATATTCATATAAAAACCCATGATGGATTTGAATTTAAAAAGTCATAG
mRNA sequenceShow/hide mRNA sequence
ATGATGGAAAATTTGGACTTAGCTGAGCAGGAGGCCCAAGGGGTCTTTGAACTCGAGGATAACAATATCTCAAACTATGAAAAGGAGCTGGGTTGTGTGGTGGCGTGCAA
GATTTTTTCGGAGGTTCTGTTCAGCCCAGATGCGTTAAAAAAACTCATTCCAAAAATATGGAACATAGATCAAAAGGTTACTCTGGAATCAGAGGGAGGGGATCAAAGAA
ATAGGGGAAAATTTCTGAGAGTAAAGGTGTTGATTGACATTCGTTTACCTTTGAGAAGAGCCTTGAAATTGAAGAGCGGGGCTATGGCACCTGAGAAATGGGTGCGTTTA
TCCTATGAAAAACTGCCTGAGTTCTGTCGAGGTTGTGGAAGAGTCGGCCATTTAGAGATGAATTGCAGTTTTGTGGTCATTGGTGAGGGCATCCCATTTCCTTTTGGAGA
GGAGTTGAGAGAACCAACAAGCCATTTTAGGGGAGAAAAACCTTTAATTCAGAGACAAGGAGGACGAGGAAGAGGTCGCGGAAGAGGTCGAGAAGAAGATGTTCGAGCAG
AAAACTCAAGGTGTGGAGAAGATCTTGTAGAGGAAGAAGCTGTTGCTGCACCAACAAGGGAGGAGAGGCAGTTTCCGATGGATCTTGAGCGGAGAATGGCCGGAAACGGC
TACTCGGGTGCTGCCTCGGGAGCTCGCAATTCGAAAGGTCAAATTCAATCTGAGGGCTTTGCAGAATTTGGGGGCAAGTCAGGTACGGAGTTGGAAGATGATATTATCAT
AAGGAAAAATCGTGAAAAATTTGGAGGAAATAAGGGACACGTGGCGGAGGATGATAAGGTCGTAACTAATGAAAAGGGGAAAAGTAAAGTTGTTATGGAAGGGAGGAATG
AATTACTATTTGGCCCTTTTGATATTCATATAAAAACCCATGATGGATTTGAATTTAAAAAGTCATAG
Protein sequenceShow/hide protein sequence
MMENLDLAEQEAQGVFELEDNNISNYEKELGCVVACKIFSEVLFSPDALKKLIPKIWNIDQKVTLESEGGDQRNRGKFLRVKVLIDIRLPLRRALKLKSGAMAPEKWVRL
SYEKLPEFCRGCGRVGHLEMNCSFVVIGEGIPFPFGEELREPTSHFRGEKPLIQRQGGRGRGRGRGREEDVRAENSRCGEDLVEEEAVAAPTREERQFPMDLERRMAGNG
YSGAASGARNSKGQIQSEGFAEFGGKSGTELEDDIIIRKNREKFGGNKGHVAEDDKVVTNEKGKSKVVMEGRNELLFGPFDIHIKTHDGFEFKKS