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Sed0012625 (gene) of Chayote v1 genome

Gene IDSed0012625
OrganismSechium edule (Chayote v1)
DescriptionIntegrase catalytic domain-containing protein
Genome locationLG11:14209176..14210726
RNA-Seq ExpressionSed0012625
SyntenySed0012625
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0015074 - DNA integration (biological process)
GO:0016021 - integral component of membrane (cellular component)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR013103 - Reverse transcriptase, RNA-dependent DNA polymerase


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0054997.1 putative mitochondrial protein [Cucumis melo var. makuwa]2.6e-1869.35Show/hide
Query:  NPDGSIARHNARLVAKGYHQEEGIDYKETFSPVIKKPTVRVIISLVVSFGWSLRQLDVKNCY
        NPDG+I RH ARLVAKGYHQ+EGID++ETF P++KKPTVR+++SL   F W LRQLDVKN +
Subjt:  NPDGSIARHNARLVAKGYHQEEGIDYKETFSPVIKKPTVRVIISLVVSFGWSLRQLDVKNCY

PRQ31173.1 putative RNA-directed DNA polymerase [Rosa chinensis]1.3e-1769.7Show/hide
Query:  NPDGSIARHNARLVAKGYHQEEGIDYKETFSPVIKKPTVRVIISLVVSFGWSLRQLDVKNCYGPGF
        NPDGS+ R  ARLVAKG+HQ++GID+ ETFSPVIK  T+R +ISL VS GWSLRQLDVKN +  GF
Subjt:  NPDGSIARHNARLVAKGYHQEEGIDYKETFSPVIKKPTVRVIISLVVSFGWSLRQLDVKNCYGPGF

PRQ47733.1 putative RNA-directed DNA polymerase [Rosa chinensis]7.5e-1865.67Show/hide
Query:  MNPDGSIARHNARLVAKGYHQEEGIDYKETFSPVIKKPTVRVIISLVVSFGWSLRQLDVKNCYGPGF
        +NPDG++ RH A+LVAKG+HQ +GIDY ETFSP+IK  T+RV++ L VS GWSLRQLDVKN +  GF
Subjt:  MNPDGSIARHNARLVAKGYHQEEGIDYKETFSPVIKKPTVRVIISLVVSFGWSLRQLDVKNCYGPGF

TYJ96936.1 putative mitochondrial protein [Cucumis melo var. makuwa]1.3e-1767.74Show/hide
Query:  NPDGSIARHNARLVAKGYHQEEGIDYKETFSPVIKKPTVRVIISLVVSFGWSLRQLDVKNCY
        NPDG+IARH ARLVAKGYHQ +G D+ ETFSPV+KKPT+R+I++L   + WSL QLDVKN +
Subjt:  NPDGSIARHNARLVAKGYHQEEGIDYKETFSPVIKKPTVRVIISLVVSFGWSLRQLDVKNCY

TYK17991.1 putative mitochondrial protein [Cucumis melo var. makuwa]4.4e-1869.35Show/hide
Query:  NPDGSIARHNARLVAKGYHQEEGIDYKETFSPVIKKPTVRVIISLVVSFGWSLRQLDVKNCY
        NPDG+IAR+ ARLVAKGYHQ+EGI+++ETFSPV+KKPTV++++SL   F W LRQLDVKN +
Subjt:  NPDGSIARHNARLVAKGYHQEEGIDYKETFSPVIKKPTVRVIISLVVSFGWSLRQLDVKNCY

TrEMBL top hitse value%identityAlignment
A0A2N9GZI1 Integrase catalytic domain-containing protein3.7e-1872.58Show/hide
Query:  NPDGSIARHNARLVAKGYHQEEGIDYKETFSPVIKKPTVRVIISLVVSFGWSLRQLDVKNCY
        N DG+IAR+ ARLVAKG+HQ+ G+D+ ETFSPV+K PTVR+I+SLVVS GWSLRQLDVKN +
Subjt:  NPDGSIARHNARLVAKGYHQEEGIDYKETFSPVIKKPTVRVIISLVVSFGWSLRQLDVKNCY

A0A2P6QAI9 Putative RNA-directed DNA polymerase6.2e-1869.7Show/hide
Query:  NPDGSIARHNARLVAKGYHQEEGIDYKETFSPVIKKPTVRVIISLVVSFGWSLRQLDVKNCYGPGF
        NPDGS+ R  ARLVAKG+HQ++GID+ ETFSPVIK  T+R +ISL VS GWSLRQLDVKN +  GF
Subjt:  NPDGSIARHNARLVAKGYHQEEGIDYKETFSPVIKKPTVRVIISLVVSFGWSLRQLDVKNCYGPGF

A0A2P6RMS8 Putative RNA-directed DNA polymerase3.7e-1865.67Show/hide
Query:  MNPDGSIARHNARLVAKGYHQEEGIDYKETFSPVIKKPTVRVIISLVVSFGWSLRQLDVKNCYGPGF
        +NPDG++ RH A+LVAKG+HQ +GIDY ETFSP+IK  T+RV++ L VS GWSLRQLDVKN +  GF
Subjt:  MNPDGSIARHNARLVAKGYHQEEGIDYKETFSPVIKKPTVRVIISLVVSFGWSLRQLDVKNCYGPGF

A0A5A7UKB0 Putative mitochondrial protein1.3e-1869.35Show/hide
Query:  NPDGSIARHNARLVAKGYHQEEGIDYKETFSPVIKKPTVRVIISLVVSFGWSLRQLDVKNCY
        NPDG+I RH ARLVAKGYHQ+EGID++ETF P++KKPTVR+++SL   F W LRQLDVKN +
Subjt:  NPDGSIARHNARLVAKGYHQEEGIDYKETFSPVIKKPTVRVIISLVVSFGWSLRQLDVKNCY

A0A5D3D170 Putative mitochondrial protein2.1e-1869.35Show/hide
Query:  NPDGSIARHNARLVAKGYHQEEGIDYKETFSPVIKKPTVRVIISLVVSFGWSLRQLDVKNCY
        NPDG+IAR+ ARLVAKGYHQ+EGI+++ETFSPV+KKPTV++++SL   F W LRQLDVKN +
Subjt:  NPDGSIARHNARLVAKGYHQEEGIDYKETFSPVIKKPTVRVIISLVVSFGWSLRQLDVKNCY

SwissProt top hitse value%identityAlignment
P04146 Copia protein4.3e-0843.55Show/hide
Query:  NPDGSIARHNARLVAKGYHQEEGIDYKETFSPVIKKPTVRVIISLVVSFGWSLRQLDVKNCY
        N  G+  R+ ARLVA+G+ Q+  IDY+ETF+PV +  + R I+SLV+ +   + Q+DVK  +
Subjt:  NPDGSIARHNARLVAKGYHQEEGIDYKETFSPVIKKPTVRVIISLVVSFGWSLRQLDVKNCY

P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-941.3e-0946.67Show/hide
Query:  DGSIARHNARLVAKGYHQEEGIDYKETFSPVIKKPTVRVIISLVVSFGWSLRQLDVKNCY
        D  + R+ ARLV KG+ Q++GID+ E FSPV+K  ++R I+SL  S    + QLDVK  +
Subjt:  DGSIARHNARLVAKGYHQEEGIDYKETFSPVIKKPTVRVIISLVVSFGWSLRQLDVKNCY

P92520 Uncharacterized mitochondrial protein AtMg008202.8e-0752.17Show/hide
Query:  MNPDGSIARHNARLVAKGYHQEEGIDYKETFSPVIKKPTVRVIISL
        ++ DG++ R  ARLVAKG+HQEEGI + ET+SPV++  T+R I+++
Subjt:  MNPDGSIARHNARLVAKGYHQEEGIDYKETFSPVIKKPTVRVIISL

Q94HW2 Retrovirus-related Pol polyprotein from transposon RE18.1e-1553.85Show/hide
Query:  NPDGSIARHNARLVAKGYHQEEGIDYKETFSPVIKKPTVRVIISLVVSFGWSLRQLDVKNCYGPG
        N DGS+ R+ ARLVAKGY+Q  G+DY ETFSPVIK  ++R+++ + V   W +RQLDV N +  G
Subjt:  NPDGSIARHNARLVAKGYHQEEGIDYKETFSPVIKKPTVRVIISLVVSFGWSLRQLDVKNCYGPG

Q9ZT94 Retrovirus-related Pol polyprotein from transposon RE28.1e-1553.85Show/hide
Query:  NPDGSIARHNARLVAKGYHQEEGIDYKETFSPVIKKPTVRVIISLVVSFGWSLRQLDVKNCYGPG
        N DGS+ R+ ARLVAKGY+Q  G+DY ETFSPVIK  ++R+++ + V   W +RQLDV N +  G
Subjt:  NPDGSIARHNARLVAKGYHQEEGIDYKETFSPVIKKPTVRVIISLVVSFGWSLRQLDVKNCYGPG

Arabidopsis top hitse value%identityAlignment
AT4G23160.1 cysteine-rich RLK (RECEPTOR-like protein kinase) 82.1e-1351.61Show/hide
Query:  NPDGSIARHNARLVAKGYHQEEGIDYKETFSPVIKKPTVRVIISLVVSFGWSLRQLDVKNCY
        N DG+I R+ ARLVAKGY Q+EGID+ ETFSPV K  +V++I+++   + ++L QLD+ N +
Subjt:  NPDGSIARHNARLVAKGYHQEEGIDYKETFSPVIKKPTVRVIISLVVSFGWSLRQLDVKNCY

ATMG00820.1 Reverse transcriptase (RNA-dependent DNA polymerase)2.0e-0852.17Show/hide
Query:  MNPDGSIARHNARLVAKGYHQEEGIDYKETFSPVIKKPTVRVIISL
        ++ DG++ R  ARLVAKG+HQEEGI + ET+SPV++  T+R I+++
Subjt:  MNPDGSIARHNARLVAKGYHQEEGIDYKETFSPVIKKPTVRVIISL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAATCCTGATGGAAGCATTGCTCGACACAATGCACGTTTAGTTGCGAAAGGGTATCATCAAGAGGAAGGTATTGATTATAAGGAAACCTTCAGCCCTGTTATAAAGAA
ACCAACTGTTAGAGTTATAATTTCCTTAGTTGTTTCTTTTGGTTGGTCATTAAGGCAACTTGATGTGAAGAATTGTTACGGCCCAGGTTTTCATCCCGGTTTTCCAGGTT
CTATGCCCCGGGAGTGTTTGGAGAGGTTTGTGGCCTTGGTTGGCAAAACAGAAATTAAAAAGAAAAAGGTGTTCGAGCCAAGGATCGAACCCGGGTTGTCTTGGTTGGGG
CAGTTAGCGAAAGGAGGTGTTTCCAGTTGTGCCGGAATACAGAAAGTTGGCTCCTCTCCTTCTCCCTCTTGTACTTGGCGATTCCTCCATCTCCCGAGCGCCGTCTCCGA
TCGCTCAAGCCGTGAAGCCCTTGCAGCAGTCCATCCGCACGCCCAGCCGCTCGCGCGCTCGCCTGGCCGATCGCAGTCCCTCGCGATCGCCCGCCAGCCCTGCAGCGCCC
CATCGCCGATTGCAGCCCCTCGCGATCGCCCGCCAGCCCTGTAG
mRNA sequenceShow/hide mRNA sequence
AAAAGTATCCTCAGTGGAGAAATGCAATGCAAAATGAATATGATACTCTTCTCGAACAAGAAACTTGGACCTTAGTTCCTTTACCTCTCAACAAACAAGTCATTGGATAT
AAAAGATATATAGACTTAAGATGAATCCTGATGGAAGCATTGCTCGACACAATGCACGTTTAGTTGCGAAAGGGTATCATCAAGAGGAAGGTATTGATTATAAGGAAACC
TTCAGCCCTGTTATAAAGAAACCAACTGTTAGAGTTATAATTTCCTTAGTTGTTTCTTTTGGTTGGTCATTAAGGCAACTTGATGTGAAGAATTGTTACGGCCCAGGTTT
TCATCCCGGTTTTCCAGGTTCTATGCCCCGGGAGTGTTTGGAGAGGTTTGTGGCCTTGGTTGGCAAAACAGAAATTAAAAAGAAAAAGGTGTTCGAGCCAAGGATCGAAC
CCGGGTTGTCTTGGTTGGGGCAGTTAGCGAAAGGAGGTGTTTCCAGTTGTGCCGGAATACAGAAAGTTGGCTCCTCTCCTTCTCCCTCTTGTACTTGGCGATTCCTCCAT
CTCCCGAGCGCCGTCTCCGATCGCTCAAGCCGTGAAGCCCTTGCAGCAGTCCATCCGCACGCCCAGCCGCTCGCGCGCTCGCCTGGCCGATCGCAGTCCCTCGCGATCGC
CCGCCAGCCCTGCAGCGCCCCATCGCCGATTGCAGCCCCTCGCGATCGCCCGCCAGCCCTGTAGCTCCCCATCGCCGATCGTAGCCCCTCGCGATCTCCCACACGCCCGC
GTCGTAGCCCCATCGCTAGCGAGCGCAGCAGCCCGATCGCCCCGTCGACGCTCGCCCATCGCAGCTGCACGCACACCCGCGCAGCCGCAGCAGCATCCGAACGCACGCCC
GCGCCCTGCCAGCCGCACAGCAGCAGCCGTTGCTCGCCGTGCCGCACACCCTTGCCGAGCCTGCCGCTCATGCCCACGAGCAGCCCGTCCGCACGCCAGCTCCATGCAGT
GTGCCTTGCAGCCGAGACACCCCTGGTGCTTGGTCGAGTTGTGGTCCGTTAGCTAGCTCGTGTTCATTTGCAGCTCGGGAGTCCTCTTGTGTGTTTGTTTGTCTTCCGAT
TCAGGTAAGGATTTCTTACCGGAGTTGTGTGGGCCCTGCGATATTTCTGTGATTACCAGCATGTCTAGTTGTTAGGT
Protein sequenceShow/hide protein sequence
MNPDGSIARHNARLVAKGYHQEEGIDYKETFSPVIKKPTVRVIISLVVSFGWSLRQLDVKNCYGPGFHPGFPGSMPRECLERFVALVGKTEIKKKKVFEPRIEPGLSWLG
QLAKGGVSSCAGIQKVGSSPSPSCTWRFLHLPSAVSDRSSREALAAVHPHAQPLARSPGRSQSLAIARQPCSAPSPIAAPRDRPPAL