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Sed0012667 (gene) of Chayote v1 genome

Gene IDSed0012667
OrganismSechium edule (Chayote v1)
Description50S ribosomal protein L30
Genome locationLG05:7509260..7511947
RNA-Seq ExpressionSed0012667
SyntenySed0012667
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0005739 - mitochondrion (cellular component)
GO:0015934 - large ribosomal subunit (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR005996 - Ribosomal protein L30, bacterial-type
IPR016082 - Ribosomal protein L30, ferredoxin-like fold domain
IPR036919 - Ribosomal protein L30, ferredoxin-like fold domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6604875.1 hypothetical protein SDJN03_02192, partial [Cucurbita argyrosperma subsp. sororia]2.9e-4895.28Show/hide
Query:  MSAFKAFKANVPIAWSPNLYITLVRGIPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMIQQVKRLVVVETEEMFKARKQKVEQHKALRPPLVINHHP
        M+AFKAFKANVPIAWSPNLYITLVRGIPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMIQQVKRLVVVETEEMFKARKQKVEQHK+LRPPLV+NH P
Subjt:  MSAFKAFKANVPIAWSPNLYITLVRGIPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMIQQVKRLVVVETEEMFKARKQKVEQHKALRPPLVINHHP

Query:  APSSAS
        APSS S
Subjt:  APSSAS

XP_008455933.1 PREDICTED: 50S ribosomal protein L30 [Cucumis melo]7.1e-4792.45Show/hide
Query:  MSAFKAFKANVPIAWSPNLYITLVRGIPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMIQQVKRLVVVETEEMFKARKQKVEQHKALRPPLVINHHP
        M+AFKAFKA+VPIAWSPNLYITLVRG+PGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMIQQVKRLVVVETEEM+KARKQK+E+H+ALRPPLVINH P
Subjt:  MSAFKAFKANVPIAWSPNLYITLVRGIPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMIQQVKRLVVVETEEMFKARKQKVEQHKALRPPLVINHHP

Query:  APSSAS
        APSSAS
Subjt:  APSSAS

XP_022947175.1 uncharacterized protein LOC111451121 [Cucurbita moschata]2.9e-4895.28Show/hide
Query:  MSAFKAFKANVPIAWSPNLYITLVRGIPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMIQQVKRLVVVETEEMFKARKQKVEQHKALRPPLVINHHP
        M+AFKAFKANVPIAWSPNLYITLVRGIPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMIQQVKRLVVVETEEMFKARKQKVEQHK+LRPPLV+NH P
Subjt:  MSAFKAFKANVPIAWSPNLYITLVRGIPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMIQQVKRLVVVETEEMFKARKQKVEQHKALRPPLVINHHP

Query:  APSSAS
        APSS S
Subjt:  APSSAS

XP_023512952.1 uncharacterized protein LOC111777540 [Cucurbita pepo subsp. pepo]2.4e-4793.4Show/hide
Query:  MSAFKAFKANVPIAWSPNLYITLVRGIPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMIQQVKRLVVVETEEMFKARKQKVEQHKALRPPLVINHHP
        M+AFKAFKANVPIAWSPNLYITLVRG+PGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGM+QQVKRLVVVETEEM+KARKQKVEQH ALRPPLV+NH P
Subjt:  MSAFKAFKANVPIAWSPNLYITLVRGIPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMIQQVKRLVVVETEEMFKARKQKVEQHKALRPPLVINHHP

Query:  APSSAS
        APSSAS
Subjt:  APSSAS

XP_023533795.1 uncharacterized protein LOC111795541 [Cucurbita pepo subsp. pepo]4.2e-4793.4Show/hide
Query:  MSAFKAFKANVPIAWSPNLYITLVRGIPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMIQQVKRLVVVETEEMFKARKQKVEQHKALRPPLVINHHP
        M+AFKAFKANVPIAWSPNLYITLVRGIPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGM+QQVKRLVVVETEEMFKARKQKVEQHK+LR PLV+NH P
Subjt:  MSAFKAFKANVPIAWSPNLYITLVRGIPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMIQQVKRLVVVETEEMFKARKQKVEQHKALRPPLVINHHP

Query:  APSSAS
        APSS S
Subjt:  APSSAS

TrEMBL top hitse value%identityAlignment
A0A1S3C214 50S ribosomal protein L303.4e-4792.45Show/hide
Query:  MSAFKAFKANVPIAWSPNLYITLVRGIPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMIQQVKRLVVVETEEMFKARKQKVEQHKALRPPLVINHHP
        M+AFKAFKA+VPIAWSPNLYITLVRG+PGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMIQQVKRLVVVETEEM+KARKQK+E+H+ALRPPLVINH P
Subjt:  MSAFKAFKANVPIAWSPNLYITLVRGIPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMIQQVKRLVVVETEEMFKARKQKVEQHKALRPPLVINHHP

Query:  APSSAS
        APSSAS
Subjt:  APSSAS

A0A5A7VAZ6 50S ribosomal protein L303.4e-4792.45Show/hide
Query:  MSAFKAFKANVPIAWSPNLYITLVRGIPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMIQQVKRLVVVETEEMFKARKQKVEQHKALRPPLVINHHP
        M+AFKAFKA+VPIAWSPNLYITLVRG+PGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMIQQVKRLVVVETEEM+KARKQK+E+H+ALRPPLVINH P
Subjt:  MSAFKAFKANVPIAWSPNLYITLVRGIPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMIQQVKRLVVVETEEMFKARKQKVEQHKALRPPLVINHHP

Query:  APSSAS
        APSSAS
Subjt:  APSSAS

A0A6J1CI25 uncharacterized protein LOC1110111345.9e-4792.45Show/hide
Query:  MSAFKAFKANVPIAWSPNLYITLVRGIPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMIQQVKRLVVVETEEMFKARKQKVEQHKALRPPLVINHHP
        M+AFKAFKANVPIAWSPNLYITLVRG+PGTRRLHRRTLEALRL KCNRTVMRWNTPTVRGMIQQVKRLVVVETEEM+KARKQKVEQHKALRPPLV+NH P
Subjt:  MSAFKAFKANVPIAWSPNLYITLVRGIPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMIQQVKRLVVVETEEMFKARKQKVEQHKALRPPLVINHHP

Query:  APSSAS
         PSS S
Subjt:  APSSAS

A0A6J1FUA4 uncharacterized protein LOC1114488485.9e-4791.51Show/hide
Query:  MSAFKAFKANVPIAWSPNLYITLVRGIPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMIQQVKRLVVVETEEMFKARKQKVEQHKALRPPLVINHHP
        M+AFKAFKANVPI WSPNLYITLVRG+PGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGM+QQVKRLVVVETEEM+KARKQKVEQH ALRPPLV+NH P
Subjt:  MSAFKAFKANVPIAWSPNLYITLVRGIPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMIQQVKRLVVVETEEMFKARKQKVEQHKALRPPLVINHHP

Query:  APSSAS
        +PSSAS
Subjt:  APSSAS

A0A6J1G641 uncharacterized protein LOC1114511211.4e-4895.28Show/hide
Query:  MSAFKAFKANVPIAWSPNLYITLVRGIPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMIQQVKRLVVVETEEMFKARKQKVEQHKALRPPLVINHHP
        M+AFKAFKANVPIAWSPNLYITLVRGIPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMIQQVKRLVVVETEEMFKARKQKVEQHK+LRPPLV+NH P
Subjt:  MSAFKAFKANVPIAWSPNLYITLVRGIPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMIQQVKRLVVVETEEMFKARKQKVEQHKALRPPLVINHHP

Query:  APSSAS
        APSS S
Subjt:  APSSAS

SwissProt top hitse value%identityAlignment
A1KB09 50S ribosomal protein L301.6e-0448.08Show/hide
Query:  ITLVRGIPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMIQQVKRLVVVE
        +TLV+ + GT++ HR T+  L LR+ N TV   +TP VRGM+ +V  LV VE
Subjt:  ITLVRGIPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMIQQVKRLVVVE

A4QBL5 50S ribosomal protein L301.2e-0448.15Show/hide
Query:  LYITLVRGIPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMIQQVKRLVVVE
        L IT ++G  GT+  HR  L +L L++   TV+R +TP VRGMI  V+ L+VVE
Subjt:  LYITLVRGIPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMIQQVKRLVVVE

C3PL27 50S ribosomal protein L309.1e-0542.59Show/hide
Query:  LYITLVRGIPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMIQQVKRLVVVE
        L IT V+G+ GT+  HR  +E+L L++   +V++ +TP +RGM+ +V+ LV VE
Subjt:  LYITLVRGIPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMIQQVKRLVVVE

Q8FS51 50S ribosomal protein L307.0e-0548.15Show/hide
Query:  LYITLVRGIPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMIQQVKRLVVVE
        L IT V+G  GT+  HR  L +L L++   +V+R +TP VRGM+Q V+ L+VVE
Subjt:  LYITLVRGIPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMIQQVKRLVVVE

Q8NSX3 50S ribosomal protein L307.0e-0548.15Show/hide
Query:  LYITLVRGIPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMIQQVKRLVVVE
        L IT ++G  GT+  HR  L +L L++   TV+R +TP VRGMI  V+ L+VVE
Subjt:  LYITLVRGIPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMIQQVKRLVVVE

Arabidopsis top hitse value%identityAlignment
AT5G55140.1 ribosomal protein L30 family protein4.3e-3466.36Show/hide
Query:  MSAFKAFKANVPIAWSPNLYITLVRGIPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMIQQVKRLVVVETEEMFKARKQKVEQHKALRPPLVINH-H
        MS F+AFKA VPI WS +LYITLVRG+PGTR+LHRRTLEA+ LR+C+RTV+  N  ++RGMI QVKR+VVVETEEM+ ARK+    HKALRPPLV++H  
Subjt:  MSAFKAFKANVPIAWSPNLYITLVRGIPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMIQQVKRLVVVETEEMFKARKQKVEQHKALRPPLVINH-H

Query:  PAPSSAS
        PA  S++
Subjt:  PAPSSAS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGTGCCTTCAAGGCCTTCAAAGCTAATGTTCCAATTGCATGGAGTCCTAATCTATATATCACATTAGTAAGAGGCATTCCAGGAACAAGGAGACTTCACAGACGTAC
GTTAGAGGCATTACGTCTTCGGAAGTGTAACCGAACTGTCATGCGCTGGAACACACCAACTGTTAGGGGAATGATCCAACAGGTAAAGCGATTAGTGGTGGTTGAAACGG
AGGAGATGTTTAAAGCCCGGAAACAAAAGGTGGAACAGCACAAGGCCCTTCGACCTCCATTAGTTATAAATCACCATCCTGCTCCAAGTTCTGCTTCTTGA
mRNA sequenceShow/hide mRNA sequence
TTTACAGGCGTTTCAGCAAAGCCCTAGCCGCCAGCCTCACTTCATCTTCTTTCTCTTGATTTTCCCCTGGCTTCTTCATCTCACTTCTCTCCTTTTTCAGATTTTGGAGA
ACTTGGACATGAGTGCCTTCAAGGCCTTCAAAGCTAATGTTCCAATTGCATGGAGTCCTAATCTATATATCACATTAGTAAGAGGCATTCCAGGAACAAGGAGACTTCAC
AGACGTACGTTAGAGGCATTACGTCTTCGGAAGTGTAACCGAACTGTCATGCGCTGGAACACACCAACTGTTAGGGGAATGATCCAACAGGTAAAGCGATTAGTGGTGGT
TGAAACGGAGGAGATGTTTAAAGCCCGGAAACAAAAGGTGGAACAGCACAAGGCCCTTCGACCTCCATTAGTTATAAATCACCATCCTGCTCCAAGTTCTGCTTCTTGAG
AACACACATTGCTGTTGGAGGTTAGGTTTACTTGTCAAGTATTGGGATGGTGTGAAAAAGAATTATATTTCCAGTTTATTTTTCTTGAATTTTTTGACAGTCAAGGCTTT
TATGATGCTCTATATAGATCTTGCCGAGTTTAGTTCCCGACTAAAATAAGAAACATTTCGATTGTTTGAAAATGCAATTTCTATGAAGTGCATTTGATAATGCTATGCTA
CTTTCAGTAAGAAGCCTGCTATGAAACGAAGCTGTTTTCATCAATGAATGGCTACGCCCTGTGTCACAGTA
Protein sequenceShow/hide protein sequence
MSAFKAFKANVPIAWSPNLYITLVRGIPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMIQQVKRLVVVETEEMFKARKQKVEQHKALRPPLVINHHPAPSSAS