; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Sed0012692 (gene) of Chayote v1 genome

Gene IDSed0012692
OrganismSechium edule (Chayote v1)
DescriptionEukaryotic translation initiation factor 5A
Genome locationLG08:3976391..3977693
RNA-Seq ExpressionSed0012692
SyntenySed0012692
Gene Ontology termsGO:0045901 - positive regulation of translational elongation (biological process)
GO:0045905 - positive regulation of translational termination (biological process)
GO:0003746 - translation elongation factor activity (molecular function)
GO:0043022 - ribosome binding (molecular function)
InterPro domainsIPR001884 - Translation elongation factor IF5A-like
IPR012340 - Nucleic acid-binding, OB-fold
IPR020189 - Translation elongation factor, IF5A C-terminal


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA8522871.1 hypothetical protein F0562_009294 [Nyssa sinensis]2.8e-2372.41Show/hide
Query:  IVPSSHNYD-------------------VSLLTENGNTKDDLKIPTDDNLLTQLKDEFAEGKDLVLTVMSAMGEEQICALKDIGPKN
        IVPSSHN D                   VSLLTENGNTKDDLK+PTDDNLLTQ+KD FAEGKDLV+TVMSAMGEEQICALKDIGPKN
Subjt:  IVPSSHNYD-------------------VSLLTENGNTKDDLKIPTDDNLLTQLKDEFAEGKDLVLTVMSAMGEEQICALKDIGPKN

XP_004146682.1 eukaryotic translation initiation factor 5A-2 [Cucumis sativus]1.7e-2373.56Show/hide
Query:  IVPSSHNYD-------------------VSLLTENGNTKDDLKIPTDDNLLTQLKDEFAEGKDLVLTVMSAMGEEQICALKDIGPKN
        IVPSSHN D                   VSLLTENGNTKDDL++PTDDNLLTQLKD FAEGKDLVLTVMSAMGEEQICALKDIGPKN
Subjt:  IVPSSHNYD-------------------VSLLTENGNTKDDLKIPTDDNLLTQLKDEFAEGKDLVLTVMSAMGEEQICALKDIGPKN

XP_007155276.1 hypothetical protein PHAVU_003G187500g [Phaseolus vulgaris]1.5e-2485.29Show/hide
Query:  IVPSSHNYDVSLLTENGNTKDDLKIPTDDNLLTQLKDEFAEGKDLVLTVMSAMGEEQICALKDIGPKN
        IVPSSHN DVSLLTENGNTKDDL++PTDD+LLTQ+K+ FA+GKDLV++VMSAMGEEQICALKDIGPKN
Subjt:  IVPSSHNYDVSLLTENGNTKDDLKIPTDDNLLTQLKDEFAEGKDLVLTVMSAMGEEQICALKDIGPKN

XP_022135162.1 eukaryotic translation initiation factor 5A-2-like [Momordica charantia]7.4e-2474.71Show/hide
Query:  IVPSSHNYD-------------------VSLLTENGNTKDDLKIPTDDNLLTQLKDEFAEGKDLVLTVMSAMGEEQICALKDIGPKN
        IVPSSHN D                   VSLLTENGNTKDDLK+PTDDNLLTQLKD FAEGKDLVLTVMSAMGEEQICALKDIGPKN
Subjt:  IVPSSHNYD-------------------VSLLTENGNTKDDLKIPTDDNLLTQLKDEFAEGKDLVLTVMSAMGEEQICALKDIGPKN

XP_022889818.1 eukaryotic translation initiation factor 5A-2 isoform X2 [Olea europaea var. sylvestris]8.8e-2588.06Show/hide
Query:  IVPSSHNYDVSLLTENGNTKDDLKIPTDDNLLTQLKDEFAEGKDLVLTVMSAMGEEQICALKDIGPK
        IVPSSHN DVSLLTENGNTKDDL++PTDDNLLTQ+KD FAEGKDLV++VMSAMGEEQIC LKDIGPK
Subjt:  IVPSSHNYDVSLLTENGNTKDDLKIPTDDNLLTQLKDEFAEGKDLVLTVMSAMGEEQICALKDIGPK

TrEMBL top hitse value%identityAlignment
A0A0A0LTB3 Eukaryotic translation initiation factor 5A8.0e-2473.56Show/hide
Query:  IVPSSHNYD-------------------VSLLTENGNTKDDLKIPTDDNLLTQLKDEFAEGKDLVLTVMSAMGEEQICALKDIGPKN
        IVPSSHN D                   VSLLTENGNTKDDL++PTDDNLLTQLKD FAEGKDLVLTVMSAMGEEQICALKDIGPKN
Subjt:  IVPSSHNYD-------------------VSLLTENGNTKDDLKIPTDDNLLTQLKDEFAEGKDLVLTVMSAMGEEQICALKDIGPKN

A0A5J5A0I7 Eukaryotic translation initiation factor 5A1.4e-2372.41Show/hide
Query:  IVPSSHNYD-------------------VSLLTENGNTKDDLKIPTDDNLLTQLKDEFAEGKDLVLTVMSAMGEEQICALKDIGPKN
        IVPSSHN D                   VSLLTENGNTKDDLK+PTDDNLLTQ+KD FAEGKDLV+TVMSAMGEEQICALKDIGPKN
Subjt:  IVPSSHNYD-------------------VSLLTENGNTKDDLKIPTDDNLLTQLKDEFAEGKDLVLTVMSAMGEEQICALKDIGPKN

A0A5J9VQM3 Eukaryotic translation initiation factor 5A1.4e-2383.82Show/hide
Query:  IVPSSHNYDVSLLTENGNTKDDLKIPTDDNLLTQLKDEFAEGKDLVLTVMSAMGEEQICALKDIGPKN
        IVPSSHN DVSLLTENGNTKDDL++PTD+NLL Q+K  FAEGKDLV+TV SAMGEEQICALKDIGPK+
Subjt:  IVPSSHNYDVSLLTENGNTKDDLKIPTDDNLLTQLKDEFAEGKDLVLTVMSAMGEEQICALKDIGPKN

A0A6J1C1W6 Eukaryotic translation initiation factor 5A3.6e-2474.71Show/hide
Query:  IVPSSHNYD-------------------VSLLTENGNTKDDLKIPTDDNLLTQLKDEFAEGKDLVLTVMSAMGEEQICALKDIGPKN
        IVPSSHN D                   VSLLTENGNTKDDLK+PTDDNLLTQLKD FAEGKDLVLTVMSAMGEEQICALKDIGPKN
Subjt:  IVPSSHNYD-------------------VSLLTENGNTKDDLKIPTDDNLLTQLKDEFAEGKDLVLTVMSAMGEEQICALKDIGPKN

V7CDB6 Eukaryotic translation initiation factor 5A7.2e-2585.29Show/hide
Query:  IVPSSHNYDVSLLTENGNTKDDLKIPTDDNLLTQLKDEFAEGKDLVLTVMSAMGEEQICALKDIGPKN
        IVPSSHN DVSLLTENGNTKDDL++PTDD+LLTQ+K+ FA+GKDLV++VMSAMGEEQICALKDIGPKN
Subjt:  IVPSSHNYDVSLLTENGNTKDDLKIPTDDNLLTQLKDEFAEGKDLVLTVMSAMGEEQICALKDIGPKN

SwissProt top hitse value%identityAlignment
P24922 Eukaryotic translation initiation factor 5A-21.2e-2469.77Show/hide
Query:  IVPSSHNYD-------------------VSLLTENGNTKDDLKIPTDDNLLTQLKDEFAEGKDLVLTVMSAMGEEQICALKDIGPK
        IVPSSHN D                   VSLLTENGNTKDDL++PTDDNLLTQ+KD FAEGKDLV++VMSAMGEEQICALKDIGPK
Subjt:  IVPSSHNYD-------------------VSLLTENGNTKDDLKIPTDDNLLTQLKDEFAEGKDLVLTVMSAMGEEQICALKDIGPK

P26564 Eukaryotic translation initiation factor 5A-11.3e-2368.6Show/hide
Query:  VPSSHNYD-------------------VSLLTENGNTKDDLKIPTDDNLLTQLKDEFAEGKDLVLTVMSAMGEEQICALKDIGPKN
        VPSSHN D                   VSLLTENGNTKDDLK+PTDD+LLTQ+KD FAEGKDLV++VMSAMGEEQICALKDIG KN
Subjt:  VPSSHNYD-------------------VSLLTENGNTKDDLKIPTDDNLLTQLKDEFAEGKDLVLTVMSAMGEEQICALKDIGPKN

Q945F4 Eukaryotic translation initiation factor 5A-23.8e-2366.28Show/hide
Query:  IVPSSHNYD-------------------VSLLTENGNTKDDLKIPTDDNLLTQLKDEFAEGKDLVLTVMSAMGEEQICALKDIGPK
        IVPSSHN D                   VSLLT+NG+TKDDLK+PTDD+LLTQ+KD FA+GKDLV++VMSAMGEEQICALKDIGPK
Subjt:  IVPSSHNYD-------------------VSLLTENGNTKDDLKIPTDDNLLTQLKDEFAEGKDLVLTVMSAMGEEQICALKDIGPK

Q9AXQ6 Eukaryotic translation initiation factor 5A-16.5e-2366.28Show/hide
Query:  IVPSSHNYD-------------------VSLLTENGNTKDDLKIPTDDNLLTQLKDEFAEGKDLVLTVMSAMGEEQICALKDIGPK
        IVPSSHN D                   VSLLTENGNTKDDL++PTDD LL Q+KD FAEGKDLVL+VMSAMGEEQIC +KDIGPK
Subjt:  IVPSSHNYD-------------------VSLLTENGNTKDDLKIPTDDNLLTQLKDEFAEGKDLVLTVMSAMGEEQICALKDIGPK

Q9SC12 Eukaryotic translation initiation factor 5A1.3e-2368.6Show/hide
Query:  IVPSSHNYD-------------------VSLLTENGNTKDDLKIPTDDNLLTQLKDEFAEGKDLVLTVMSAMGEEQICALKDIGPK
        IVPSSHN D                   VSLLTENGNTKDDLK+PTDD LLTQ+KD F EGKDLV++VMSAMGEEQICALKDIGPK
Subjt:  IVPSSHNYD-------------------VSLLTENGNTKDDLKIPTDDNLLTQLKDEFAEGKDLVLTVMSAMGEEQICALKDIGPK

Arabidopsis top hitse value%identityAlignment
AT1G13950.1 eukaryotic elongation factor 5A-14.1e-2060.47Show/hide
Query:  IVPSSHNYD-------------------VSLLTENGNTKDDLKIPTDDNLLTQLKDEFAEGKDLVLTVMSAMGEEQICALKDIGPK
        IVPSSHN D                   VSLLT+NG+TKDDLK+P DD LL Q+K  F +GKDLV++VMSAMGEEQI ALKDIGPK
Subjt:  IVPSSHNYD-------------------VSLLTENGNTKDDLKIPTDDNLLTQLKDEFAEGKDLVLTVMSAMGEEQICALKDIGPK

AT1G26630.1 Eukaryotic translation initiation factor 5A-1 (eIF-5A 1) protein1.4e-1753.57Show/hide
Query:  IVPSSHNYD-------------------VSLLTENGNTKDDLKIPTDDNLLTQLKDEFAEGKDLVLTVMSAMGEEQICALKDIG
        IVPSSHN D                   VSLLT++G TKDDLK+PTDD L  Q++  F EGKD+V++VMS+MGEEQICA+K++G
Subjt:  IVPSSHNYD-------------------VSLLTENGNTKDDLKIPTDDNLLTQLKDEFAEGKDLVLTVMSAMGEEQICALKDIG

AT1G26630.2 Eukaryotic translation initiation factor 5A-1 (eIF-5A 1) protein1.3e-0550Show/hide
Query:  IVPSSHNYD-------------------VSLLTENGNTKDDLKIPTDDNLLTQL
        IVPSSHN D                   VSLLT++G TKDDLK+PTDD L  QL
Subjt:  IVPSSHNYD-------------------VSLLTENGNTKDDLKIPTDDNLLTQL

AT1G69410.1 eukaryotic elongation factor 5A-39.7e-2260.47Show/hide
Query:  IVPSSHNYD-------------------VSLLTENGNTKDDLKIPTDDNLLTQLKDEFAEGKDLVLTVMSAMGEEQICALKDIGPK
        IVPSSHN D                   VSLLT+NG+TKDDLK+PTD+ LLTQLK+ F EGKD+V++VMSAMGEEQ+CALK++GPK
Subjt:  IVPSSHNYD-------------------VSLLTENGNTKDDLKIPTDDNLLTQLKDEFAEGKDLVLTVMSAMGEEQICALKDIGPK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTGGCCTTGGGCTGCCGTCAATGTAGCTTGTGCATGCATTTTCCTTGGTATGTTTTCGAGATGGACATGGCTTATCGTTCCTTCTTCTCACAACTATGATGTCAGTCT
GCTTACTGAAAATGGAAACACTAAGGATGACCTGAAGATTCCAACTGATGATAATCTGCTAACACAGCTTAAAGATGAGTTCGCGGAAGGAAAAGATCTCGTCCTAACCG
TCATGTCTGCGATGGGAGAGGAGCAGATCTGCGCTCTCAAGGACATCGGTCCGAAAAATTAA
mRNA sequenceShow/hide mRNA sequence
ATGTGGCCTTGGGCTGCCGTCAATGTAGCTTGTGCATGCATTTTCCTTGGTATGTTTTCGAGATGGACATGGCTTATCGTTCCTTCTTCTCACAACTATGATGTCAGTCT
GCTTACTGAAAATGGAAACACTAAGGATGACCTGAAGATTCCAACTGATGATAATCTGCTAACACAGCTTAAAGATGAGTTCGCGGAAGGAAAAGATCTCGTCCTAACCG
TCATGTCTGCGATGGGAGAGGAGCAGATCTGCGCTCTCAAGGACATCGGTCCGAAAAATTAA
Protein sequenceShow/hide protein sequence
MWPWAAVNVACACIFLGMFSRWTWLIVPSSHNYDVSLLTENGNTKDDLKIPTDDNLLTQLKDEFAEGKDLVLTVMSAMGEEQICALKDIGPKN