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Sed0012693 (gene) of Chayote v1 genome

Gene IDSed0012693
OrganismSechium edule (Chayote v1)
DescriptionTetratricopeptide-like helical
Genome locationLG07:17935780..17936145
RNA-Seq ExpressionSed0012693
SyntenySed0012693
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0044707.1 Tetratricopeptide-like helical [Cucumis melo var. makuwa]1.3e-2057.5Show/hide
Query:  MSVSLEALAMAGVDSNYWAMNAEEWERNEMEDDVPPHLLADEDEDDD-ENVT--------RTDGFSSSWGRKDAGARGGIHYIFGVLCSLKGATEERASN
        MSVSLEALAMAG+DSN W M+A+EWERNE+ D VPPHLLADE++D+D E VT        R DG    W R+D  A  G H I G+  SL    E+RASN
Subjt:  MSVSLEALAMAGVDSNYWAMNAEEWERNEMEDDVPPHLLADEDEDDD-ENVT--------RTDGFSSSWGRKDAGARGGIHYIFGVLCSLKGATEERASN

Query:  ELRGSLRIVVGTIVGFLMVM
         +  S+RI+V TI+GFLMVM
Subjt:  ELRGSLRIVVGTIVGFLMVM

KAG6577295.1 hypothetical protein SDJN03_24869, partial [Cucurbita argyrosperma subsp. sororia]7.1e-2760.47Show/hide
Query:  MSVSLEALAMAGVDSNYWAMNAEEWERNEMEDDVPPHLLADEDEDDDENVTRT--------DGFSSSWGRKDAGARGGIHYIFGVLCSLKGATEERASNE
        MSVSLEALAMAG+ SN WAM+AEEWERNE+E+DVPPHLLADED DDD+NVT T         GF  S  R+D GA   IH  +G+LCSL  + E+RASN 
Subjt:  MSVSLEALAMAGVDSNYWAMNAEEWERNEMEDDVPPHLLADEDEDDDENVTRT--------DGFSSSWGRKDAGARGGIHYIFGVLCSLKGATEERASNE

Query:  LRGSLRIVVGTIVGFLMVMAMNIISAQGS
        +  S+RI+V TI+GFL+V  + IISA  S
Subjt:  LRGSLRIVVGTIVGFLMVMAMNIISAQGS

KAG7015383.1 hypothetical protein SDJN02_23018, partial [Cucurbita argyrosperma subsp. argyrosperma]9.3e-2760.47Show/hide
Query:  MSVSLEALAMAGVDSNYWAMNAEEWERNEMEDDVPPHLLADEDEDDDENVTRT--------DGFSSSWGRKDAGARGGIHYIFGVLCSLKGATEERASNE
        MSVSLEALAMAG+ SN WAM+AEEWERNE+E+DVPPHLLADED DDD+NVT T         GF  S  R+D GA   IH  +G+LCSL  + E+RASN 
Subjt:  MSVSLEALAMAGVDSNYWAMNAEEWERNEMEDDVPPHLLADEDEDDDENVTRT--------DGFSSSWGRKDAGARGGIHYIFGVLCSLKGATEERASNE

Query:  LRGSLRIVVGTIVGFLMVMAMNIISAQGS
        +  S+RI+V TI+GFL+V  + IISA  S
Subjt:  LRGSLRIVVGTIVGFLMVMAMNIISAQGS

TYK16880.1 Tetratricopeptide-like helical [Cucumis melo var. makuwa]2.8e-2357.69Show/hide
Query:  MSVSLEALAMAGVDSNYWAMNAEEWERNEMEDDVPPHLLADEDEDDD-ENVT--------RTDGFSSSWGRKDAGARGGIHYIFGVLCSLKGATEERASN
        MSVSLEALAMAG+DSN W M+A+EWERNE+ D VPPHLLADE++D+D E VT        R DG    W R+D  A G +  I G+  SL    E+RASN
Subjt:  MSVSLEALAMAGVDSNYWAMNAEEWERNEMEDDVPPHLLADEDEDDD-ENVT--------RTDGFSSSWGRKDAGARGGIHYIFGVLCSLKGATEERASN

Query:  ELRGSLRIVVGTIVGFLMVMAMNIISAQGS
         +  S+RI+V TI+GFLMVM M IISAQ S
Subjt:  ELRGSLRIVVGTIVGFLMVMAMNIISAQGS

XP_022943015.1 uncharacterized protein LOC111447880 [Cucurbita moschata]1.2e-2154.55Show/hide
Query:  MSVSLEALAMAGVDSNYWAMNAEEWERNEMEDDVPPHLLADEDEDDDENVTRTDGFSSSWGRKDAGARGGIHYIFGVLCSLKGATEERASNELRGSLRIV
        MSVSLEALAMAG+DSN WAM+AEEWERNEME D+PPHLLADED+++DE  T+      S  RKD G  GG+     ++  L+  TE+R  N L  S+ IV
Subjt:  MSVSLEALAMAGVDSNYWAMNAEEWERNEMEDDVPPHLLADEDEDDDENVTRTDGFSSSWGRKDAGARGGIHYIFGVLCSLKGATEERASNELRGSLRIV

Query:  VGTIVGFLMVMAMNIISAQGS
           +VGFLM M + II+++ S
Subjt:  VGTIVGFLMVMAMNIISAQGS

TrEMBL top hitse value%identityAlignment
A0A0A0KU90 Uncharacterized protein3.6e-0858.57Show/hide
Query:  MSVSLEALAMAGVDSNYWAMNAEEWERN----EMEDDVPPHLLADEDEDDDENVTRTDGFSSSWGRKDAG
        M VSLEALAMAG+DSN WAM+AEEW+ N    E +D +PPHLLADEDE   EN+   +    S  RKD G
Subjt:  MSVSLEALAMAGVDSNYWAMNAEEWERN----EMEDDVPPHLLADEDEDDDENVTRTDGFSSSWGRKDAG

A0A0A0KWE7 Uncharacterized protein5.0e-2660.15Show/hide
Query:  MSVSLEALAMAGVDSNYWAMNAEEWERNEMEDDVPPHLLADE--DEDDDENVTRT---------DGFSSSWGRKDAGARGGI-HYIFGVLCSLKGATEER
        MSVSLEALAMAG+DSN WAM+AEEWERNE+ D VPPHLLADE  DED DE+VT +         DG    W  +D  A GG  H I G+ CSL    E+R
Subjt:  MSVSLEALAMAGVDSNYWAMNAEEWERNEMEDDVPPHLLADE--DEDDDENVTRT---------DGFSSSWGRKDAGARGGI-HYIFGVLCSLKGATEER

Query:  ASNELRGSLRIVVGTIVGFLMVMAMNIISAQGS
        ASN +  S+RI+V TI+GFLMVM M IISAQ S
Subjt:  ASNELRGSLRIVVGTIVGFLMVMAMNIISAQGS

A0A5A7TS68 Tetratricopeptide-like helical6.3e-2157.5Show/hide
Query:  MSVSLEALAMAGVDSNYWAMNAEEWERNEMEDDVPPHLLADEDEDDD-ENVT--------RTDGFSSSWGRKDAGARGGIHYIFGVLCSLKGATEERASN
        MSVSLEALAMAG+DSN W M+A+EWERNE+ D VPPHLLADE++D+D E VT        R DG    W R+D  A  G H I G+  SL    E+RASN
Subjt:  MSVSLEALAMAGVDSNYWAMNAEEWERNEMEDDVPPHLLADEDEDDD-ENVT--------RTDGFSSSWGRKDAGARGGIHYIFGVLCSLKGATEERASN

Query:  ELRGSLRIVVGTIVGFLMVM
         +  S+RI+V TI+GFLMVM
Subjt:  ELRGSLRIVVGTIVGFLMVM

A0A5D3CZU0 Tetratricopeptide-like helical1.4e-2357.69Show/hide
Query:  MSVSLEALAMAGVDSNYWAMNAEEWERNEMEDDVPPHLLADEDEDDD-ENVT--------RTDGFSSSWGRKDAGARGGIHYIFGVLCSLKGATEERASN
        MSVSLEALAMAG+DSN W M+A+EWERNE+ D VPPHLLADE++D+D E VT        R DG    W R+D  A G +  I G+  SL    E+RASN
Subjt:  MSVSLEALAMAGVDSNYWAMNAEEWERNEMEDDVPPHLLADEDEDDD-ENVT--------RTDGFSSSWGRKDAGARGGIHYIFGVLCSLKGATEERASN

Query:  ELRGSLRIVVGTIVGFLMVMAMNIISAQGS
         +  S+RI+V TI+GFLMVM M IISAQ S
Subjt:  ELRGSLRIVVGTIVGFLMVMAMNIISAQGS

A0A6J1FX98 uncharacterized protein LOC1114478805.7e-2254.55Show/hide
Query:  MSVSLEALAMAGVDSNYWAMNAEEWERNEMEDDVPPHLLADEDEDDDENVTRTDGFSSSWGRKDAGARGGIHYIFGVLCSLKGATEERASNELRGSLRIV
        MSVSLEALAMAG+DSN WAM+AEEWERNEME D+PPHLLADED+++DE  T+      S  RKD G  GG+     ++  L+  TE+R  N L  S+ IV
Subjt:  MSVSLEALAMAGVDSNYWAMNAEEWERNEMEDDVPPHLLADEDEDDDENVTRTDGFSSSWGRKDAGARGGIHYIFGVLCSLKGATEERASNELRGSLRIV

Query:  VGTIVGFLMVMAMNIISAQGS
           +VGFLM M + II+++ S
Subjt:  VGTIVGFLMVMAMNIISAQGS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G22320.1 unknown protein3.1e-0446Show/hide
Query:  LEALAMAGVDSNYWAMNAEEWERNEMEDDVPPHLLADEDEDDDENVTRTD
        +EALAMAGVD   W ++ EEWE    E  VP HLLAD+ +++++     D
Subjt:  LEALAMAGVDSNYWAMNAEEWERNEMEDDVPPHLLADEDEDDDENVTRTD


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCAGTTTCTTTAGAAGCTTTGGCAATGGCCGGGGTTGATTCCAACTATTGGGCTATGAATGCTGAAGAATGGGAACGAAATGAAATGGAGGATGACGTTCCGCCGCA
TTTATTAGCTGATGAAGACGAAGACGACGATGAAAACGTAACAAGAACCGACGGATTCTCCAGCAGCTGGGGGCGGAAAGATGCCGGAGCTCGTGGTGGTATCCATTATA
TCTTTGGTGTTTTGTGTAGTTTAAAAGGAGCCACAGAGGAGAGAGCTTCTAATGAGCTGAGGGGCTCATTGAGAATAGTGGTGGGTACTATTGTGGGGTTTCTGATGGTG
ATGGCCATGAACATAATTAGTGCACAAGGATCGTAA
mRNA sequenceShow/hide mRNA sequence
ATGTCAGTTTCTTTAGAAGCTTTGGCAATGGCCGGGGTTGATTCCAACTATTGGGCTATGAATGCTGAAGAATGGGAACGAAATGAAATGGAGGATGACGTTCCGCCGCA
TTTATTAGCTGATGAAGACGAAGACGACGATGAAAACGTAACAAGAACCGACGGATTCTCCAGCAGCTGGGGGCGGAAAGATGCCGGAGCTCGTGGTGGTATCCATTATA
TCTTTGGTGTTTTGTGTAGTTTAAAAGGAGCCACAGAGGAGAGAGCTTCTAATGAGCTGAGGGGCTCATTGAGAATAGTGGTGGGTACTATTGTGGGGTTTCTGATGGTG
ATGGCCATGAACATAATTAGTGCACAAGGATCGTAA
Protein sequenceShow/hide protein sequence
MSVSLEALAMAGVDSNYWAMNAEEWERNEMEDDVPPHLLADEDEDDDENVTRTDGFSSSWGRKDAGARGGIHYIFGVLCSLKGATEERASNELRGSLRIVVGTIVGFLMV
MAMNIISAQGS