CuGenDBv2

Gene ID	Sed0012724
Organism	Sechium edule (Chayote v1)
Description	zinc finger HIT domain-containing protein 3
Genome location	LG05:1026753..1030650
RNA-Seq Expression	Sed0012724
Synteny	Sed0012724
Gene Ontology terms	GO:0000463 - maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) (biological process) GO:0000492 - box C/D snoRNP assembly (biological process) GO:0048254 - snoRNA localization (biological process) GO:0005634 - nucleus (cellular component) GO:0070761 - pre-snoRNP complex (cellular component) GO:0046872 - metal ion binding (molecular function)
InterPro domains	IPR007529 - Zinc finger, HIT-type IPR040197 - Zinc finger HIT domain-containing protein 3

Homology

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GenBank top hits

e value

%identity

Alignment

KAG7036274.1 Zinc finger HIT domain-containing protein 3 [Cucurbita argyrosperma subsp. argyrosperma]

6.1e-56

85.61

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Query:  MGPRQCQVCNEAPSKYKCPQCLVPYCSLVCFKKHKEVPCVKPVSALDQSISPNKTLVDRPIFVGGQNEVLEKSKLEAIASSSEIHNTLNDEKLRNLISAI
        MGPRQCQVCNEAPSKYKCP CLVPYCSLVCFKKHKEVPCVKPVSA DQSI+PN + VDRP+FVG QNEVLEK++LEAIASSSEI NTLNDEKLR+LI AI
Subjt:  MGPRQCQVCNEAPSKYKCPQCLVPYCSLVCFKKHKEVPCVKPVSALDQSISPNKTLVDRPIFVGGQNEVLEKSKLEAIASSSEIHNTLNDEKLRNLISAI

Query:  DSSQDPETELDKAMEDEAFRIFTSKVSSIIGS
        DSS DPE ELDKAMEDEAFRI + K+SSIIGS
Subjt:  DSSQDPETELDKAMEDEAFRIFTSKVSSIIGS

XP_022157884.1 zinc finger HIT domain-containing protein 3 isoform X1 [Momordica charantia]

3.7e-53

83.33

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Query:  MGPRQCQVCNEAPSKYKCPQCLVPYCSLVCFKKHKEVPCVKPVSALDQSISPNKTLVDRPIFVGGQNEVLEKSKLEAIASSSEIHNTLNDEKLRNLISAI
        MGPRQCQVCNEAPSKYKCP CL PYCSLVCFKKHKEVPCVKPVSA DQS +PN +LVDRPI V  Q+EVLEKS+LEAIASSSEI NTLNDE L+ LI AI
Subjt:  MGPRQCQVCNEAPSKYKCPQCLVPYCSLVCFKKHKEVPCVKPVSALDQSISPNKTLVDRPIFVGGQNEVLEKSKLEAIASSSEIHNTLNDEKLRNLISAI

Query:  DSSQDPETELDKAMEDEAFRIFTSKVSSIIGS
         SS DPETELD+AMEDEAFRIF+SK+SSIIGS
Subjt:  DSSQDPETELDKAMEDEAFRIFTSKVSSIIGS

XP_022931150.1 zinc finger HIT domain-containing protein 3 [Cucurbita moschata]

1.4e-55

84.85

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Query:  MGPRQCQVCNEAPSKYKCPQCLVPYCSLVCFKKHKEVPCVKPVSALDQSISPNKTLVDRPIFVGGQNEVLEKSKLEAIASSSEIHNTLNDEKLRNLISAI
        MGPRQCQVCNEAPSKYKCP CLVPYCSLVCFKKHKEVPCVKPVSA DQSI+PN + VDRP+FVG QNEVLEK++LEAIASSSEI NTLNDEKLR+LI AI
Subjt:  MGPRQCQVCNEAPSKYKCPQCLVPYCSLVCFKKHKEVPCVKPVSALDQSISPNKTLVDRPIFVGGQNEVLEKSKLEAIASSSEIHNTLNDEKLRNLISAI

Query:  DSSQDPETELDKAMEDEAFRIFTSKVSSIIGS
        DSS DPE ELDKAMEDEAFRI + K+SSI+GS
Subjt:  DSSQDPETELDKAMEDEAFRIFTSKVSSIIGS

XP_022995777.1 zinc finger HIT domain-containing protein 3 [Cucurbita maxima]

2.1e-56

86.36

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Query:  MGPRQCQVCNEAPSKYKCPQCLVPYCSLVCFKKHKEVPCVKPVSALDQSISPNKTLVDRPIFVGGQNEVLEKSKLEAIASSSEIHNTLNDEKLRNLISAI
        MGPRQCQVCNEAPSKYKCP CLVPYCSLVCFKKHKEVPCVKPVSA DQSI+PN + VDRP+FVG QNEVLEK++LEAIASSSEI NTLNDEKLR+LI AI
Subjt:  MGPRQCQVCNEAPSKYKCPQCLVPYCSLVCFKKHKEVPCVKPVSALDQSISPNKTLVDRPIFVGGQNEVLEKSKLEAIASSSEIHNTLNDEKLRNLISAI

Query:  DSSQDPETELDKAMEDEAFRIFTSKVSSIIGS
        DSS DPE ELDKAMEDEAFRI +SK+SSIIGS
Subjt:  DSSQDPETELDKAMEDEAFRIFTSKVSSIIGS

XP_023533050.1 zinc finger HIT domain-containing protein 3 [Cucurbita pepo subsp. pepo]

2.7e-56

85.61

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Query:  MGPRQCQVCNEAPSKYKCPQCLVPYCSLVCFKKHKEVPCVKPVSALDQSISPNKTLVDRPIFVGGQNEVLEKSKLEAIASSSEIHNTLNDEKLRNLISAI
        MGPRQCQVCNEAPSKYKCP CLVPYCSLVCFKKHKEVPCVKPVSA DQSI+PN + VDRP+FVG QNEVLEK++LEAIASSSE+ NTLNDEKLR+LI AI
Subjt:  MGPRQCQVCNEAPSKYKCPQCLVPYCSLVCFKKHKEVPCVKPVSALDQSISPNKTLVDRPIFVGGQNEVLEKSKLEAIASSSEIHNTLNDEKLRNLISAI

Query:  DSSQDPETELDKAMEDEAFRIFTSKVSSIIGS
        DSS DPE ELDKAMEDEAFRI +SK+SSIIGS
Subjt:  DSSQDPETELDKAMEDEAFRIFTSKVSSIIGS

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KDK5 HIT-type domain-containing protein

6.4e-51

80.45

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Query:  MGPRQCQVCNEAPSKYKCPQCLVPYCSLVCFKKHKEVPC-VKPVSALDQSISPNKTLVDRPIFVGGQNEVLEKSKLEAIASSSEIHNTLNDEKLRNLISA
        M PR+CQVCNEAPSKYKCP CL PYCSLVCFKKHKEVPC +KPVS  DQS + N T VDRPI VG QNEVLEKS+LEAIASSSEIHN LNDEKL+  I A
Subjt:  MGPRQCQVCNEAPSKYKCPQCLVPYCSLVCFKKHKEVPC-VKPVSALDQSISPNKTLVDRPIFVGGQNEVLEKSKLEAIASSSEIHNTLNDEKLRNLISA

Query:  IDSSQDPETELDKAMEDEAFRIFTSKVSSIIGS
        IDSS DPETE+DKAMEDEAFRIF+SK+SSII S
Subjt:  IDSSQDPETELDKAMEDEAFRIFTSKVSSIIGS

A0A1S3CM88 zinc finger HIT domain-containing protein 3 isoform X1

1.5e-52

81.95

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Query:  MGPRQCQVCNEAPSKYKCPQCLVPYCSLVCFKKHKEVPC-VKPVSALDQSISPNKTLVDRPIFVGGQNEVLEKSKLEAIASSSEIHNTLNDEKLRNLISA
        M PR+CQVCNEAPSKYKCP CL PYCSLVCFKKHKEVPC +KPVS  DQS +PN + VDRPI VG QNEVLEKS+LEAIASSSEIHN LNDEKLR  I A
Subjt:  MGPRQCQVCNEAPSKYKCPQCLVPYCSLVCFKKHKEVPC-VKPVSALDQSISPNKTLVDRPIFVGGQNEVLEKSKLEAIASSSEIHNTLNDEKLRNLISA

Query:  IDSSQDPETELDKAMEDEAFRIFTSKVSSIIGS
        IDSS DPETELDKAMEDEAFRIF+SK+SSII S
Subjt:  IDSSQDPETELDKAMEDEAFRIFTSKVSSIIGS

A0A6J1DXU2 zinc finger HIT domain-containing protein 3 isoform X1

1.8e-53

83.33

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Query:  MGPRQCQVCNEAPSKYKCPQCLVPYCSLVCFKKHKEVPCVKPVSALDQSISPNKTLVDRPIFVGGQNEVLEKSKLEAIASSSEIHNTLNDEKLRNLISAI
        MGPRQCQVCNEAPSKYKCP CL PYCSLVCFKKHKEVPCVKPVSA DQS +PN +LVDRPI V  Q+EVLEKS+LEAIASSSEI NTLNDE L+ LI AI
Subjt:  MGPRQCQVCNEAPSKYKCPQCLVPYCSLVCFKKHKEVPCVKPVSALDQSISPNKTLVDRPIFVGGQNEVLEKSKLEAIASSSEIHNTLNDEKLRNLISAI

Query:  DSSQDPETELDKAMEDEAFRIFTSKVSSIIGS
         SS DPETELD+AMEDEAFRIF+SK+SSIIGS
Subjt:  DSSQDPETELDKAMEDEAFRIFTSKVSSIIGS

A0A6J1ESW0 zinc finger HIT domain-containing protein 3

6.6e-56

84.85

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Query:  MGPRQCQVCNEAPSKYKCPQCLVPYCSLVCFKKHKEVPCVKPVSALDQSISPNKTLVDRPIFVGGQNEVLEKSKLEAIASSSEIHNTLNDEKLRNLISAI
        MGPRQCQVCNEAPSKYKCP CLVPYCSLVCFKKHKEVPCVKPVSA DQSI+PN + VDRP+FVG QNEVLEK++LEAIASSSEI NTLNDEKLR+LI AI
Subjt:  MGPRQCQVCNEAPSKYKCPQCLVPYCSLVCFKKHKEVPCVKPVSALDQSISPNKTLVDRPIFVGGQNEVLEKSKLEAIASSSEIHNTLNDEKLRNLISAI

Query:  DSSQDPETELDKAMEDEAFRIFTSKVSSIIGS
        DSS DPE ELDKAMEDEAFRI + K+SSI+GS
Subjt:  DSSQDPETELDKAMEDEAFRIFTSKVSSIIGS

A0A6J1JZX2 zinc finger HIT domain-containing protein 3

1.0e-56

86.36

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Query:  MGPRQCQVCNEAPSKYKCPQCLVPYCSLVCFKKHKEVPCVKPVSALDQSISPNKTLVDRPIFVGGQNEVLEKSKLEAIASSSEIHNTLNDEKLRNLISAI
        MGPRQCQVCNEAPSKYKCP CLVPYCSLVCFKKHKEVPCVKPVSA DQSI+PN + VDRP+FVG QNEVLEK++LEAIASSSEI NTLNDEKLR+LI AI
Subjt:  MGPRQCQVCNEAPSKYKCPQCLVPYCSLVCFKKHKEVPCVKPVSALDQSISPNKTLVDRPIFVGGQNEVLEKSKLEAIASSSEIHNTLNDEKLRNLISAI

Query:  DSSQDPETELDKAMEDEAFRIFTSKVSSIIGS
        DSS DPE ELDKAMEDEAFRI +SK+SSIIGS
Subjt:  DSSQDPETELDKAMEDEAFRIFTSKVSSIIGS

SwissProt top hits

e value

%identity

Alignment

O36031 Uncharacterized zinc-finger protein C4F10.19c

3.5e-06

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Query:  CQVCNEAPSKYKCPQCLVPYCSLVCFKKHKEVPCVKPVSALDQSISPNKTLVDRP------IFVGGQNEVLEKSKLEAIASSSEIHNTLNDEKLRNLISA
        C +CNE+  KYKCP+C  PYCSL C+K H+   C         +    K  ++ P      I+V G+   L +   EA+ S S + + + D  ++NLI +
Subjt:  CQVCNEAPSKYKCPQCLVPYCSLVCFKKHKEVPCVKPVSALDQSISPNKTLVDRP------IFVGGQNEVLEKSKLEAIASSSEIHNTLNDEKLRNLISA

Q15649 Zinc finger HIT domain-containing protein 3

1.7e-08

30.71

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Query:  CQVCNEAPSKYKCPQCLVPYCSLVCFKKHKEV--PCVKPVSALDQSISPNKTLVDRPI-----------FVGGQNEV--LEKSKLEAIASSSEIHNTLND
        C +C E P KY+CP C VPYCS+VCF+KHKE   P  +PV    +S  P KT+  +P+           F+    E   +    L+ +  S+ + + L +
Subjt:  CQVCNEAPSKYKCPQCLVPYCSLVCFKKHKEV--PCVKPVSALDQSISPNKTLVDRPI-----------FVGGQNEV--LEKSKLEAIASSSEIHNTLND

Query:  EKLRNLISAIDSSQDPETELDKAMEDEAFRIFTSKVSSII
          LR L+  +D  +D    +   M++  F  F      I+
Subjt:  EKLRNLISAIDSSQDPETELDKAMEDEAFRIFTSKVSSII

Q2KIH1 Zinc finger HIT domain-containing protein 3

7.9e-06

62.16

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Query:  GPRQCQVCNEAPSKYKCPQCLVPYCSLVCFKKHKEVP
        G   C VC E P KY+CP C VPYCSL CF+KHK  P
Subjt:  GPRQCQVCNEAPSKYKCPQCLVPYCSLVCFKKHKEVP

Q6UIM1 Zinc finger HIT domain-containing protein 3 (Fragment)

8.4e-08

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Query:  CQVCNEAPSKYKCPQCLVPYCSLVCFKKHKEV--PCVKPVSALDQSISPNKTLVDRPI-----------FVGGQNEV--LEKSKLEAIASSSEIHNTLND
        C +C E P KY+CP C VPYCS+ CF+KHKE   P  +PV    +S  P KT   +P+           F+    E   +    L+ +  S+ + + L +
Subjt:  CQVCNEAPSKYKCPQCLVPYCSLVCFKKHKEV--PCVKPVSALDQSISPNKTLVDRPI-----------FVGGQNEV--LEKSKLEAIASSSEIHNTLND

Query:  EKLRNLISAIDSSQDPETELDKAMEDEAFRIFTSKVSSII
          LR L+  +D  +D    +   M++  F  F      I+
Subjt:  EKLRNLISAIDSSQDPETELDKAMEDEAFRIFTSKVSSII

Q6UIM2 Zinc finger HIT domain-containing protein 3 (Fragment)

2.7e-06

29.01

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Query:  KYKCPQCLVPYCSLVCFKKHKEV--PCVKPVSALDQSISPNKTLVDRPI-----------FVGGQNEV--LEKSKLEAIASSSEIHNTLNDEKLRNLISA
        KY+CP C VPYCS+ CF+KHKE   P  +PV    +S  P KT+  +P+           F+    E   +    L+ +  S+ + + L +  LR L+  
Subjt:  KYKCPQCLVPYCSLVCFKKHKEV--PCVKPVSALDQSISPNKTLVDRPI-----------FVGGQNEV--LEKSKLEAIASSSEIHNTLNDEKLRNLISA

Query:  IDSSQDPETELDKAMEDEAFRIFTSKVSSII
        +D  +D    +   M++  F  F      I+
Subjt:  IDSSQDPETELDKAMEDEAFRIFTSKVSSII

Arabidopsis top hits

e value

%identity

Alignment

AT4G28820.1 HIT-type Zinc finger family protein

8.3e-27

46.2

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Query:  CQVCNEAPSKYKCPQCLVPYCSLVCFKKHKEVPCVKP-----------------------------VSALDQ---SISPNKTL-VDRPIFVGGQNEVLEK
        C++C +  SKYKCP CLVPYCSL CFK HKE PC KP                             V    Q   + SP K + V RPI V  +  +LEK
Subjt:  CQVCNEAPSKYKCPQCLVPYCSLVCFKKHKEVPCVKP-----------------------------VSALDQ---SISPNKTL-VDRPIFVGGQNEVLEK

Query:  SKLEAIASSSEIHNTLNDEKLRNLISAIDSSQDPETELDKAMEDEAFRIFTSKVSSII
        ++ EAIASSSEI   L DE L+ LI +IDSS +P  ELD+AM  EAFR FT K+ S I
Subjt:  SKLEAIASSSEIHNTLNDEKLRNLISAIDSSQDPETELDKAMEDEAFRIFTSKVSSII

AT4G28820.2 HIT-type Zinc finger family protein

2.9e-27

45.86

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Query:  CQVCNEAPSKYKCPQCLVPYCSLVCFKKHKEVPCVK---PVSALDQSISPNKTL-----------------------------VDRPIFVGGQNEVLEKS
        C++C +  SKYKCP CLVPYCSL CFK HKE PC K   P S  ++  SP K +                             V RPI V  +  +LEK+
Subjt:  CQVCNEAPSKYKCPQCLVPYCSLVCFKKHKEVPCVK---PVSALDQSISPNKTL-----------------------------VDRPIFVGGQNEVLEKS

Query:  KLEAIASSSEIHNTLNDEKLRNLISAIDSSQDPETELDKAMEDEAFRIFTSKVSSII
        + EAIASSSEI   L DE L+ LI +IDSS +P  ELD+AM  EAFR FT K+ S I
Subjt:  KLEAIASSSEIHNTLNDEKLRNLISAIDSSQDPETELDKAMEDEAFRIFTSKVSSII

Sequences

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CDS sequence

Show/hide CDS sequence

ATGGGTCCTCGCCAATGTCAGGTCTGCAATGAAGCACCATCCAAATACAAATGCCCCCAATGCCTTGTTCCTTACTGCTCTCTTGTTTGTTTTAAGAAACACAAAGAAGT
GCCCTGTGTCAAGCCTGTCTCTGCATTGGACCAATCAATTTCTCCTAATAAAACACTCGTAGATAGGCCGATATTTGTTGGAGGCCAGAATGAAGTATTAGAAAAGTCGA
AGCTAGAAGCTATTGCTTCTTCCTCCGAAATACACAATACTTTGAACGATGAAAAACTACGGAACCTCATCTCCGCCATCGATAGCTCACAAGATCCAGAAACTGAACTT
GACAAAGCTATGGAAGATGAAGCATTTCGCATTTTCACCAGCAAGGTATCATCCATCATTGGCTCCTAG

mRNA sequence

Show/hide mRNA sequence

GGTATTTCGAGTTCATCAAAAACCCTTTCGTCGGGCTGTGAAGTTCGTTCGTTCCTTCCTTCGGCATTTGAGATTAAGTAATTGAATATTCTATGGGTCCTCGCCAATGT
CAGGTCTGCAATGAAGCACCATCCAAATACAAATGCCCCCAATGCCTTGTTCCTTACTGCTCTCTTGTTTGTTTTAAGAAACACAAAGAAGTGCCCTGTGTCAAGCCTGT
CTCTGCATTGGACCAATCAATTTCTCCTAATAAAACACTCGTAGATAGGCCGATATTTGTTGGAGGCCAGAATGAAGTATTAGAAAAGTCGAAGCTAGAAGCTATTGCTT
CTTCCTCCGAAATACACAATACTTTGAACGATGAAAAACTACGGAACCTCATCTCCGCCATCGATAGCTCACAAGATCCAGAAACTGAACTTGACAAAGCTATGGAAGAT
GAAGCATTTCGCATTTTCACCAGCAAGGTATCATCCATCATTGGCTCCTAGCTCTGGTGGCCACAGATGGAGGCAGGAAAATTTTGGCCAAGATTTATGTATGTATAATC
AATGGGGACATTTACGCGCCTTGCGGTAAGTGCTCGCTACAGTCGATGCCGAAATCAGCCATGAGGAAGTCTCAGATGAAATATGCCTGAGCTCAGCTGCAATGTCCAAC
AGTGATGAAGGTGCCGAGTTTAGCAATGATAAATGATTTTCTTGTTTGTTTCTTCTAACAGACTTCTTTTAACGAACAACCATTGATAAAACAATGCATAGGGAATCTCT
GTCATTTTTGAGAGGATCAATCAAACTCACGTGTGTTTAATGCTTTCTAGGTTTATTAGTTTGTAGAAAAACAGGTTTTTGACTAAAAGATTGCGATGCATTGACATTGA
AAGTTTAATATTTGGGGTATGAAAATTTTGAATTCGCA

Protein sequence

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MGPRQCQVCNEAPSKYKCPQCLVPYCSLVCFKKHKEVPCVKPVSALDQSISPNKTLVDRPIFVGGQNEVLEKSKLEAIASSSEIHNTLNDEKLRNLISAIDSSQDPETEL
DKAMEDEAFRIFTSKVSSIIGS

Sed0012724 (gene) of Chayote v1 genome