; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Sed0012788 (gene) of Chayote v1 genome

Gene IDSed0012788
OrganismSechium edule (Chayote v1)
Description40S ribosomal protein S24
Genome locationLG11:2256499..2258720
RNA-Seq ExpressionSed0012788
SyntenySed0012788
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0005829 - cytosol (cellular component)
GO:0005840 - ribosome (cellular component)
GO:0003729 - mRNA binding (molecular function)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR001976 - Ribosomal protein S24e
IPR012678 - Ribosomal protein L23/L15e core domain superfamily
IPR018098 - Ribosomal S24e conserved site


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF3976140.1 hypothetical protein CMV_000636 [Castanea mollissima]2.7e-6294.89Show/hide
Query:  MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKDKLAALYEVKDTNAIFVFKFKTHFGGGKSTGFGLIYDSVENAKKFEPKYRLIRNGLDT
        MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELK+KL+ +YEVKDTNAIFVFKF+THFGGGKSTGFGLIYDSVENAKK+EPKYRLIRNGLDT
Subjt:  MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKDKLAALYEVKDTNAIFVFKFKTHFGGGKSTGFGLIYDSVENAKKFEPKYRLIRNGLDT

Query:  KVEKSRKQMKERKNRTKKIRGVKKTKASDAAKAGKKK
        KVEKSRKQMKERKNR KKIRGVKKTKASDAAKAGKKK
Subjt:  KVEKSRKQMKERKNRTKKIRGVKKTKASDAAKAGKKK

XP_021605856.1 40S ribosomal protein S24-1-like [Manihot esculenta]7.7e-6293.43Show/hide
Query:  MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKDKLAALYEVKDTNAIFVFKFKTHFGGGKSTGFGLIYDSVENAKKFEPKYRLIRNGLDT
        MADKAVTIRTRKFMTNRLLSRKQF+IDVLHPGRPNVSKAELKDKLA+LYEVKD N IFVFKF+THFGGGKSTGFGLIYDSVENAKK+EPKYRLIRNGLDT
Subjt:  MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKDKLAALYEVKDTNAIFVFKFKTHFGGGKSTGFGLIYDSVENAKKFEPKYRLIRNGLDT

Query:  KVEKSRKQMKERKNRTKKIRGVKKTKASDAAKAGKKK
        KVEKSRKQMKERKNR+KK+RGVKKTKA DAAKAGKKK
Subjt:  KVEKSRKQMKERKNRTKKIRGVKKTKASDAAKAGKKK

XP_021619696.1 40S ribosomal protein S24-1-like [Manihot esculenta]3.5e-6293.43Show/hide
Query:  MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKDKLAALYEVKDTNAIFVFKFKTHFGGGKSTGFGLIYDSVENAKKFEPKYRLIRNGLDT
        MADKAVTIRTRKFMTNRLLSRKQF+IDVLHPGRPNVSKAELK+KLA+LYEVKD NAIFVFKF+THFGGGKS+GFGLIYDSVENAKK+EPKYRLIRNGLDT
Subjt:  MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKDKLAALYEVKDTNAIFVFKFKTHFGGGKSTGFGLIYDSVENAKKFEPKYRLIRNGLDT

Query:  KVEKSRKQMKERKNRTKKIRGVKKTKASDAAKAGKKK
        KVEKSRKQMKERKNRTKK+RG+KKTKASDAAKAGKKK
Subjt:  KVEKSRKQMKERKNRTKKIRGVKKTKASDAAKAGKKK

XP_022933090.1 40S ribosomal protein S24-1-like [Cucurbita moschata]1.0e-6194.16Show/hide
Query:  MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKDKLAALYEVKDTNAIFVFKFKTHFGGGKSTGFGLIYDSVENAKKFEPKYRLIRNGLDT
        MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELK+KLA +Y+VKD NAIFVFKF+THFGGGKSTGFGLIYDSVENAKK+EPKYRLIRNGLDT
Subjt:  MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKDKLAALYEVKDTNAIFVFKFKTHFGGGKSTGFGLIYDSVENAKKFEPKYRLIRNGLDT

Query:  KVEKSRKQMKERKNRTKKIRGVKKTKASDAAKAGKKK
        KVEKSRKQMKERKNR KKIRGVKKTKASDAAKAGKKK
Subjt:  KVEKSRKQMKERKNRTKKIRGVKKTKASDAAKAGKKK

XP_042053613.1 40S ribosomal protein S24-1-like [Salvia splendens]5.9e-6294.16Show/hide
Query:  MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKDKLAALYEVKDTNAIFVFKFKTHFGGGKSTGFGLIYDSVENAKKFEPKYRLIRNGLDT
        MADKAVTIRTRKFMTNRLLSRKQF+IDVLHPGR NVSKAELK+KLA +YEVKDTNAIFVFKF+THFGGGKSTGFGLIYDSVENAKKFEPKYRLIRNGLDT
Subjt:  MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKDKLAALYEVKDTNAIFVFKFKTHFGGGKSTGFGLIYDSVENAKKFEPKYRLIRNGLDT

Query:  KVEKSRKQMKERKNRTKKIRGVKKTKASDAAKAGKKK
        K+EKSRKQMKERKNRTKKIRGVKKTKA DAAKAGKKK
Subjt:  KVEKSRKQMKERKNRTKKIRGVKKTKASDAAKAGKKK

TrEMBL top hitse value%identityAlignment
A0A251LC56 40S ribosomal protein S243.7e-6293.43Show/hide
Query:  MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKDKLAALYEVKDTNAIFVFKFKTHFGGGKSTGFGLIYDSVENAKKFEPKYRLIRNGLDT
        MADKAVTIRTRKFMTNRLLSRKQF+IDVLHPGRPNVSKAELKDKLA+LYEVKD N IFVFKF+THFGGGKSTGFGLIYDSVENAKK+EPKYRLIRNGLDT
Subjt:  MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKDKLAALYEVKDTNAIFVFKFKTHFGGGKSTGFGLIYDSVENAKKFEPKYRLIRNGLDT

Query:  KVEKSRKQMKERKNRTKKIRGVKKTKASDAAKAGKKK
        KVEKSRKQMKERKNR+KK+RGVKKTKA DAAKAGKKK
Subjt:  KVEKSRKQMKERKNRTKKIRGVKKTKASDAAKAGKKK

A0A2C9VFS9 40S ribosomal protein S241.7e-6293.43Show/hide
Query:  MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKDKLAALYEVKDTNAIFVFKFKTHFGGGKSTGFGLIYDSVENAKKFEPKYRLIRNGLDT
        MADKAVTIRTRKFMTNRLLSRKQF+IDVLHPGRPNVSKAELK+KLA+LYEVKD NAIFVFKF+THFGGGKS+GFGLIYDSVENAKK+EPKYRLIRNGLDT
Subjt:  MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKDKLAALYEVKDTNAIFVFKFKTHFGGGKSTGFGLIYDSVENAKKFEPKYRLIRNGLDT

Query:  KVEKSRKQMKERKNRTKKIRGVKKTKASDAAKAGKKK
        KVEKSRKQMKERKNRTKK+RG+KKTKASDAAKAGKKK
Subjt:  KVEKSRKQMKERKNRTKKIRGVKKTKASDAAKAGKKK

A0A4D9BQW7 40S ribosomal protein S242.9e-6294.16Show/hide
Query:  MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKDKLAALYEVKDTNAIFVFKFKTHFGGGKSTGFGLIYDSVENAKKFEPKYRLIRNGLDT
        MADKAVTIRTRKFMTNRLLSRKQF+IDVLHPGR NVSKAELK+KLA +YEVKDTNAIFVFKF+THFGGGKSTGFGLIYDSVENAKKFEPKYRLIRNGLDT
Subjt:  MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKDKLAALYEVKDTNAIFVFKFKTHFGGGKSTGFGLIYDSVENAKKFEPKYRLIRNGLDT

Query:  KVEKSRKQMKERKNRTKKIRGVKKTKASDAAKAGKKK
        K+EKSRKQMKERKNRTKKIRGVKKTKA DAAKAGKKK
Subjt:  KVEKSRKQMKERKNRTKKIRGVKKTKASDAAKAGKKK

A0A6J1I401 40S ribosomal protein S244.9e-6294.16Show/hide
Query:  MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKDKLAALYEVKDTNAIFVFKFKTHFGGGKSTGFGLIYDSVENAKKFEPKYRLIRNGLDT
        MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELK+KLA +Y+VKD NAIFVFKF+THFGGGKSTGFGLIYDSVENAKK+EPKYRLIRNGLDT
Subjt:  MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKDKLAALYEVKDTNAIFVFKFKTHFGGGKSTGFGLIYDSVENAKKFEPKYRLIRNGLDT

Query:  KVEKSRKQMKERKNRTKKIRGVKKTKASDAAKAGKKK
        KVEKSRKQMKERKNR KKIRGVKKTKASDAAKAGKKK
Subjt:  KVEKSRKQMKERKNRTKKIRGVKKTKASDAAKAGKKK

A5BH65 40S ribosomal protein S244.9e-6292.7Show/hide
Query:  MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKDKLAALYEVKDTNAIFVFKFKTHFGGGKSTGFGLIYDSVENAKKFEPKYRLIRNGLDT
        MADKAVTIRTRKFMTNRLLSRKQF+IDVLHPGRPNVSKAELKDKLA++YEVKD N+IFVFKF+THFGGGKSTGFGLIYDSVENAKK+EPKYRLIRNGLDT
Subjt:  MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKDKLAALYEVKDTNAIFVFKFKTHFGGGKSTGFGLIYDSVENAKKFEPKYRLIRNGLDT

Query:  KVEKSRKQMKERKNRTKKIRGVKKTKASDAAKAGKKK
        KVEKSRKQMKERKNR+KK+RGVKKTKA DAAKAGKKK
Subjt:  KVEKSRKQMKERKNRTKKIRGVKKTKASDAAKAGKKK

SwissProt top hitse value%identityAlignment
Q56JU9 40S ribosomal protein S249.9e-3663.64Show/hide
Query:  VTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKDKLAALYEVKDTNAIFVFKFKTHFGGGKSTGFGLIYDSVENAKKFEPKYRLIRNGLDTKVEKS
        VTIRTRKFMTNRLL RKQ VIDVLHPG+  V K E+++KLA +Y+    + IFVF F+THFGGGK+TGFG+IYDS++ AKK EPK+RL R+GL  K + S
Subjt:  VTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKDKLAALYEVKDTNAIFVFKFKTHFGGGKSTGFGLIYDSVENAKKFEPKYRLIRNGLDTKVEKS

Query:  RKQMKERKNRTKKIRGVKKTKASDAAKAGKKK
        RKQ KERKNR KK+RG  K        AGKKK
Subjt:  RKQMKERKNRTKKIRGVKKTKASDAAKAGKKK

Q75K27 40S ribosomal protein S245.8e-3666.1Show/hide
Query:  MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKDKLAALYEVKDTNAIFVFKFKTHFGGGKSTGFGLIYDSVENAKKFEPKYRLIRNGLDT
        M   AV +RTRK +TNRLLSRKQFV++V+HPG+ NVSK +LK  +A L++V D   IF+F FKT FGGGKSTGFGLIYD++E AKK+EPKYRL R GL T
Subjt:  MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKDKLAALYEVKDTNAIFVFKFKTHFGGGKSTGFGLIYDSVENAKKFEPKYRLIRNGLDT

Query:  KVEKSRKQMKERKNRTKK
        K + SRKQ KE+KNR KK
Subjt:  KVEKSRKQMKERKNRTKK

Q8LC83 40S ribosomal protein S24-26.0e-5785.61Show/hide
Query:  MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKDKLAALYEVKDTNAIFVFKFKTHFGGGKSTGFGLIYDSVENAKKFEPKYRLIRNGLDT
        MA+KAVTIRTR FMTNRLL+RKQFVIDVLHPGR NVSKAELK+KLA +YEVKD NAIF FKF+THFGGGKS+G+GLIYD+VENAKKFEPKYRLIRNGLDT
Subjt:  MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKDKLAALYEVKDTNAIFVFKFKTHFGGGKSTGFGLIYDSVENAKKFEPKYRLIRNGLDT

Query:  KVEKSRKQMKERKNRTKKIRGVKKTKASDAAK
        K+EKSRKQ+KERKNR KKIRGVKKTKA D  K
Subjt:  KVEKSRKQMKERKNRTKKIRGVKKTKASDAAK

Q962Q6 40S ribosomal protein S249.6e-3964.39Show/hide
Query:  MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKDKLAALYEVKDTNAIFVFKFKTHFGGGKSTGFGLIYDSVENAKKFEPKYRLIRNGLDT
        M +   TIRTRKFMTNRLL+RKQ V DVLHPG+P VSK E+++KLA +Y+V   + +FVF FKT+FGGGKSTGF LIYD+++ AKKFEPK+RL R+GL  
Subjt:  MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKDKLAALYEVKDTNAIFVFKFKTHFGGGKSTGFGLIYDSVENAKKFEPKYRLIRNGLDT

Query:  KVEKSRKQMKERKNRTKKIRGVKKTKASDAAK
        K   +RKQ KERKNR KK+RG KK+K   AAK
Subjt:  KVEKSRKQMKERKNRTKKIRGVKKTKASDAAK

Q9SS17 40S ribosomal protein S24-11.1e-5888.64Show/hide
Query:  MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKDKLAALYEVKDTNAIFVFKFKTHFGGGKSTGFGLIYDSVENAKKFEPKYRLIRNGLDT
        MA+KAVTIRTRKFMTNRLLSRKQFVIDVLHPGR NVSKAELK+KLA +YEVKD NAIFVFKF+THFGGGKS+GFGLIYD+VE+AKKFEPKYRLIRNGLDT
Subjt:  MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKDKLAALYEVKDTNAIFVFKFKTHFGGGKSTGFGLIYDSVENAKKFEPKYRLIRNGLDT

Query:  KVEKSRKQMKERKNRTKKIRGVKKTKASDAAK
        K+EKSRKQ+KERKNR KKIRGVKKTKA DA K
Subjt:  KVEKSRKQMKERKNRTKKIRGVKKTKASDAAK

Arabidopsis top hitse value%identityAlignment
AT3G04920.1 Ribosomal protein S24e family protein7.7e-6088.64Show/hide
Query:  MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKDKLAALYEVKDTNAIFVFKFKTHFGGGKSTGFGLIYDSVENAKKFEPKYRLIRNGLDT
        MA+KAVTIRTRKFMTNRLLSRKQFVIDVLHPGR NVSKAELK+KLA +YEVKD NAIFVFKF+THFGGGKS+GFGLIYD+VE+AKKFEPKYRLIRNGLDT
Subjt:  MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKDKLAALYEVKDTNAIFVFKFKTHFGGGKSTGFGLIYDSVENAKKFEPKYRLIRNGLDT

Query:  KVEKSRKQMKERKNRTKKIRGVKKTKASDAAK
        K+EKSRKQ+KERKNR KKIRGVKKTKA DA K
Subjt:  KVEKSRKQMKERKNRTKKIRGVKKTKASDAAK

AT5G28060.1 Ribosomal protein S24e family protein4.2e-5885.61Show/hide
Query:  MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKDKLAALYEVKDTNAIFVFKFKTHFGGGKSTGFGLIYDSVENAKKFEPKYRLIRNGLDT
        MA+KAVTIRTR FMTNRLL+RKQFVIDVLHPGR NVSKAELK+KLA +YEVKD NAIF FKF+THFGGGKS+G+GLIYD+VENAKKFEPKYRLIRNGLDT
Subjt:  MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKDKLAALYEVKDTNAIFVFKFKTHFGGGKSTGFGLIYDSVENAKKFEPKYRLIRNGLDT

Query:  KVEKSRKQMKERKNRTKKIRGVKKTKASDAAK
        K+EKSRKQ+KERKNR KKIRGVKKTKA D  K
Subjt:  KVEKSRKQMKERKNRTKKIRGVKKTKASDAAK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGGACAAGGCAGTCACCATCCGGACCAGGAAGTTCATGACCAACAGGCTCCTCTCCAGGAAGCAATTCGTCATTGACGTTCTTCACCCAGGCAGACCCAACGTCTC
AAAGGCTGAGCTGAAGGACAAGTTGGCCGCACTCTACGAAGTGAAAGACACCAATGCCATCTTTGTTTTCAAGTTCAAAACTCACTTTGGTGGTGGAAAATCCACTGGGT
TTGGTTTGATCTATGACTCTGTTGAGAATGCAAAGAAGTTTGAGCCAAAATACAGGCTAATCAGGAATGGACTTGACACCAAGGTAGAAAAATCAAGAAAACAGATGAAG
GAAAGGAAGAACAGGACCAAGAAAATCCGTGGAGTTAAGAAGACCAAGGCTTCAGATGCTGCCAAGGCTGGAAAGAAGAAATGA
mRNA sequenceShow/hide mRNA sequence
GGGTTTTTCAGTCCTTTCTTTCATCGTCTCAGAGCAGCCGTTCTTCGAACTCCAAGCTTTCCATTTTCTTCGAAGCAGTTGCAGCCATGGCGGACAAGGCAGTCACCATC
CGGACCAGGAAGTTCATGACCAACAGGCTCCTCTCCAGGAAGCAATTCGTCATTGACGTTCTTCACCCAGGCAGACCCAACGTCTCAAAGGCTGAGCTGAAGGACAAGTT
GGCCGCACTCTACGAAGTGAAAGACACCAATGCCATCTTTGTTTTCAAGTTCAAAACTCACTTTGGTGGTGGAAAATCCACTGGGTTTGGTTTGATCTATGACTCTGTTG
AGAATGCAAAGAAGTTTGAGCCAAAATACAGGCTAATCAGGAATGGACTTGACACCAAGGTAGAAAAATCAAGAAAACAGATGAAGGAAAGGAAGAACAGGACCAAGAAA
ATCCGTGGAGTTAAGAAGACCAAGGCTTCAGATGCTGCCAAGGCTGGAAAGAAGAAATGAGAATGCTGCTGGAATTTTGTGGTTATCTTCACCAAGTATTATCTGCAGAA
TTGTGTTTTCTTTTTTATAGTCTTAGTTTTTTTTATTTTACTCTTAAATTAAATTATGTTTAATCAGTGAATTTTGTTGTTGGTGATGAGTGATATGAGAACTTTGGTTC
TTTGCTGAGGACAGAATTTTTGCATCTTTTGGTTGACCAATTTGAGAGTTTGTAGGACTCTTATTTAGTACCCTTATTTTATTTTCTAGAGACTAGATGAAAACAAATTT
CTTTCGCGTATGAGTTTGACGAGCAAAGAGAGAGTGCAAGGGCACCCTGTTTTAGGCAAGAAAAGTAATATATGTGAAGTTGAGATAAACGG
Protein sequenceShow/hide protein sequence
MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKDKLAALYEVKDTNAIFVFKFKTHFGGGKSTGFGLIYDSVENAKKFEPKYRLIRNGLDTKVEKSRKQMK
ERKNRTKKIRGVKKTKASDAAKAGKKK