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Sed0012817 (gene) of Chayote v1 genome

Gene IDSed0012817
OrganismSechium edule (Chayote v1)
DescriptionRNase H domain-containing protein
Genome locationLG06:3772461..3772733
RNA-Seq ExpressionSed0012817
SyntenySed0012817
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR036397 - Ribonuclease H superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG8478291.1 hypothetical protein CXB51_028103 [Gossypium anomalum]2.2e-0439.19Show/hide
Query:  LNVKFVCRTEAGLIVEEIRVLAHRFKSVKFSWCRRQANKIAHSLAISAAHGENAKWWMEECPPCVLDLYRSELR
        LN     ++E   +V+EI+  A+ F+SV+F    R+ANK AH +A+     EN ++W+EE P  V  L  SE R
Subjt:  LNVKFVCRTEAGLIVEEIRVLAHRFKSVKFSWCRRQANKIAHSLAISAAHGENAKWWMEECPPCVLDLYRSELR

VVA32947.1 PREDICTED: retrotransposon [Prunus dulcis]4.8e-0435.82Show/hide
Query:  CRTEAGLIVEEIRVLAHRFKSVKFSWCRRQANKIAHSLAISAAHGENAKWWMEECPPCVLDLYRSEL
        C    GL++EE+  L H F++V   W  R  NK+AH+LA  A H      W+EE P  +L +  +++
Subjt:  CRTEAGLIVEEIRVLAHRFKSVKFSWCRRQANKIAHSLAISAAHGENAKWWMEECPPCVLDLYRSEL

XP_023876445.1 uncharacterized protein LOC111988870 [Quercus suber]7.5e-0543.55Show/hide
Query:  GLIVEEIRVLAHRFKSVKFSWCRRQANKIAHSLAISAAHGENAKWWMEECPPCVLDLYRSEL
        G I+ +I++L+H F+   F   RRQ N++AHSLA SA    +   WME+ PP  + LY S+L
Subjt:  GLIVEEIRVLAHRFKSVKFSWCRRQANKIAHSLAISAAHGENAKWWMEECPPCVLDLYRSEL

XP_023914985.1 cytochrome P450 CYP82D47-like [Quercus suber]4.4e-0537.5Show/hide
Query:  GLIVEEIRVLAHRFKSVKFSWCRRQANKIAHSLAISAAHGENAKWWMEECPPCVLDLY------RSELRLDTNRVAGVAY
        G I+E+++ LA   KS  F   +R+AN+IAH+L  +A   +    W+EE PPCV D+       R  L + T  +AG  Y
Subjt:  GLIVEEIRVLAHRFKSVKFSWCRRQANKIAHSLAISAAHGENAKWWMEECPPCVLDLY------RSELRLDTNRVAGVAY

XP_030927178.1 uncharacterized protein LOC115953579 [Quercus lobata]3.7e-0442.86Show/hide
Query:  GLIVEEIRVLAHRFKSVKFSWCRRQANKIAHSLAISAAHGENAKWWMEECPPCVLDLYRSELR
        G I E+IRV A  F+ + FS  RR  N +AHSLA  A    +   WME+ PP V  +++++LR
Subjt:  GLIVEEIRVLAHRFKSVKFSWCRRQANKIAHSLAISAAHGENAKWWMEECPPCVLDLYRSELR

TrEMBL top hitse value%identityAlignment
A0A2N9EK22 Uncharacterized protein6.2e-0538.89Show/hide
Query:  LNVKFVCRTEAGLIVEEIRVLAHRFKSVKFSWCRRQANKIAHSLAISAAHGENAKWWMEECPPCVLDLYRSE
        LN    C T  GL++ + + LAH   S  F+  +RQ N +AH+LA  A H +  + WME+ PP +  LY S+
Subjt:  LNVKFVCRTEAGLIVEEIRVLAHRFKSVKFSWCRRQANKIAHSLAISAAHGENAKWWMEECPPCVLDLYRSE

A0A2N9G3I8 Reverse transcriptase domain-containing protein6.2e-0538.89Show/hide
Query:  LNVKFVCRTEAGLIVEEIRVLAHRFKSVKFSWCRRQANKIAHSLAISAAHGENAKWWMEECPPCVLDLYRSE
        LN    C T  GL++ + + LAH   S  F+  +RQ N +AH+LA  A H +  + WME+ PP +  LY S+
Subjt:  LNVKFVCRTEAGLIVEEIRVLAHRFKSVKFSWCRRQANKIAHSLAISAAHGENAKWWMEECPPCVLDLYRSE

A0A2N9GIC4 Reverse transcriptase domain-containing protein1.4e-0440.62Show/hide
Query:  GLIVEEIRVLAHRFKSVKFSWCRRQANKIAHSLAISAAHGENAKWWMEECPPCVLDLYRSELRL
        GL++ + +VLA + +S  FS  +RQ N++AH+LA  A +  + + WME  PP +  LY S L L
Subjt:  GLIVEEIRVLAHRFKSVKFSWCRRQANKIAHSLAISAAHGENAKWWMEECPPCVLDLYRSELRL

A0A2N9GYK3 Uncharacterized protein6.2e-0538.89Show/hide
Query:  LNVKFVCRTEAGLIVEEIRVLAHRFKSVKFSWCRRQANKIAHSLAISAAHGENAKWWMEECPPCVLDLYRSE
        LN    C T  GL++ + + LAH   S  F+  +RQ N +AH+LA  A H +  + WME+ PP +  LY S+
Subjt:  LNVKFVCRTEAGLIVEEIRVLAHRFKSVKFSWCRRQANKIAHSLAISAAHGENAKWWMEECPPCVLDLYRSE

A0A2N9H705 Uncharacterized protein1.8e-0440.32Show/hide
Query:  CRTEAGLIVEEIRVLAHRFKSVKFSWCRRQANKIAHSLAISAAHGENAKWWMEECPPCVLDL
        C    G +VE+I ++   F  +KFS+  +  NKIAH LAI A     A+ W+E+ P C+L L
Subjt:  CRTEAGLIVEEIRVLAHRFKSVKFSWCRRQANKIAHSLAISAAHGENAKWWMEECPPCVLDL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTAAATGTGAAATTTGTTTGTAGAACTGAGGCGGGGCTAATTGTGGAGGAAATTAGAGTTCTTGCTCATCGTTTTAAGTCAGTTAAATTTTCCTGGTGTCGACGTCA
AGCAAATAAAATAGCACATTCCCTTGCAATTTCGGCAGCCCATGGAGAGAATGCGAAGTGGTGGATGGAGGAGTGTCCTCCTTGTGTGTTGGATCTGTATCGCTCTGAAT
TGAGGTTGGATACGAATCGCGTTGCGGGTGTTGCCTACCCAGATTTTCTTTAA
mRNA sequenceShow/hide mRNA sequence
ATGTTAAATGTGAAATTTGTTTGTAGAACTGAGGCGGGGCTAATTGTGGAGGAAATTAGAGTTCTTGCTCATCGTTTTAAGTCAGTTAAATTTTCCTGGTGTCGACGTCA
AGCAAATAAAATAGCACATTCCCTTGCAATTTCGGCAGCCCATGGAGAGAATGCGAAGTGGTGGATGGAGGAGTGTCCTCCTTGTGTGTTGGATCTGTATCGCTCTGAAT
TGAGGTTGGATACGAATCGCGTTGCGGGTGTTGCCTACCCAGATTTTCTTTAA
Protein sequenceShow/hide protein sequence
MLNVKFVCRTEAGLIVEEIRVLAHRFKSVKFSWCRRQANKIAHSLAISAAHGENAKWWMEECPPCVLDLYRSELRLDTNRVAGVAYPDFL