CuGenDBv2

Gene ID	Sed0012820
Organism	Sechium edule (Chayote v1)
Description	Photosystem I iron-sulfur center
Genome location	LG13:18717046..18717290
RNA-Seq Expression	Sed0012820
Synteny	Sed0012820
Gene Ontology terms	GO:0009773 - photosynthetic electron transport in photosystem I (biological process) GO:0017004 - cytochrome complex assembly (biological process) GO:0009522 - photosystem I (cellular component) GO:0009535 - chloroplast thylakoid membrane (cellular component) GO:0016021 - integral component of membrane (cellular component) GO:0009055 - electron transfer activity (molecular function) GO:0020037 - heme binding (molecular function) GO:0046872 - metal ion binding (molecular function) GO:0051539 - 4 iron, 4 sulfur cluster binding (molecular function)
InterPro domains	IPR017896 - 4Fe-4S ferredoxin-type, iron-sulphur binding domain IPR017900 - 4Fe-4S ferredoxin, iron-sulphur binding, conserved site

Homology

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GenBank top hits

e value

%identity

Alignment

YP_001122848.1 photosystem I subunit VII [Phaseolus vulgaris]

1.6e-31

82.72

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Query:  MSHSVKIYDTCIGCTQCVRACPTDVLEMIPWGGY-------------CVGCKRCESACPTDFLSVRVYLWHETTRSMGLAY
        MSHSVKIYDTCIGCTQCVRACPTDVLEMIPWGG              CVGCKRCESACPTDFLSVRVYLWHETTRSMGLAY
Subjt:  MSHSVKIYDTCIGCTQCVRACPTDVLEMIPWGGY-------------CVGCKRCESACPTDFLSVRVYLWHETTRSMGLAY

YP_009138437.1 photosystem I subunit VII [Lathyrus davidii]

3.5e-31

81.48

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Query:  MSHSVKIYDTCIGCTQCVRACPTDVLEMIPWGGY-------------CVGCKRCESACPTDFLSVRVYLWHETTRSMGLAY
        M+HSVKIYDTCIGCTQCVRACPTDVLEMIPWGG              CVGCKRCESACPTDFLSVRVYLWHETTRSMGLAY
Subjt:  MSHSVKIYDTCIGCTQCVRACPTDVLEMIPWGGY-------------CVGCKRCESACPTDFLSVRVYLWHETTRSMGLAY

YP_009141471.1 photosystem I subunit VII [Lathyrus tingitanus]

2.1e-31

81.48

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Query:  MSHSVKIYDTCIGCTQCVRACPTDVLEMIPWGGY-------------CVGCKRCESACPTDFLSVRVYLWHETTRSMGLAY
        MSHSVKIYDTCIGCTQCVRACPTDVLEMIPWGG              CVGCKRCESACPTDFLSVR+YLWHETTRSMGLAY
Subjt:  MSHSVKIYDTCIGCTQCVRACPTDVLEMIPWGGY-------------CVGCKRCESACPTDFLSVRVYLWHETTRSMGLAY

YP_009236328.1 photosystem I subunit VII [Gynostemma pentaphyllum]

1.6e-31

82.72

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Query:  MSHSVKIYDTCIGCTQCVRACPTDVLEMIPWGGY-------------CVGCKRCESACPTDFLSVRVYLWHETTRSMGLAY
        MSHSVKIYDTCIGCTQCVRACPTDVLEMIPWGG              CVGCKRCESACPTDFLSVRVYLWHETTRSMGLAY
Subjt:  MSHSVKIYDTCIGCTQCVRACPTDVLEMIPWGGY-------------CVGCKRCESACPTDFLSVRVYLWHETTRSMGLAY

YP_009439943.1 photosystem I subunit VII [Gynostemma caulopterum]

2.7e-31

81.48

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Query:  MSHSVKIYDTCIGCTQCVRACPTDVLEMIPWGGY-------------CVGCKRCESACPTDFLSVRVYLWHETTRSMGLAY
        MSHSVKIYDTCIGCTQCVRACPTDVLEMIPWGG              CVGCKRCESACPTDFLSVRVYLWHETTRSMG+AY
Subjt:  MSHSVKIYDTCIGCTQCVRACPTDVLEMIPWGGY-------------CVGCKRCESACPTDFLSVRVYLWHETTRSMGLAY

TrEMBL top hits

e value

%identity

Alignment

A0A218KGA0 Photosystem I iron-sulfur center

7.6e-32

82.72

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Query:  MSHSVKIYDTCIGCTQCVRACPTDVLEMIPWGGY-------------CVGCKRCESACPTDFLSVRVYLWHETTRSMGLAY
        MSHSVKIYDTCIGCTQCVRACPTDVLEMIPWGG              CVGCKRCESACPTDFLSVRVYLWHETTRSMGLAY
Subjt:  MSHSVKIYDTCIGCTQCVRACPTDVLEMIPWGGY-------------CVGCKRCESACPTDFLSVRVYLWHETTRSMGLAY

A0A410HFC6 Photosystem I iron-sulfur center

7.6e-32

82.72

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Query:  MSHSVKIYDTCIGCTQCVRACPTDVLEMIPWGGY-------------CVGCKRCESACPTDFLSVRVYLWHETTRSMGLAY
        MSHSVKIYDTCIGCTQCVRACPTDVLEMIPWGG              CVGCKRCESACPTDFLSVRVYLWHETTRSMGLAY
Subjt:  MSHSVKIYDTCIGCTQCVRACPTDVLEMIPWGGY-------------CVGCKRCESACPTDFLSVRVYLWHETTRSMGLAY

A0A6M8P9Q0 Photosystem I iron-sulfur center

7.6e-32

82.72

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Query:  MSHSVKIYDTCIGCTQCVRACPTDVLEMIPWGGY-------------CVGCKRCESACPTDFLSVRVYLWHETTRSMGLAY
        MSHSVKIYDTCIGCTQCVRACPTDVLEMIPWGG              CVGCKRCESACPTDFLSVRVYLWHETTRSMGLAY
Subjt:  MSHSVKIYDTCIGCTQCVRACPTDVLEMIPWGGY-------------CVGCKRCESACPTDFLSVRVYLWHETTRSMGLAY

D5MAH2 Photosystem I iron-sulfur center

7.6e-32

82.72

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Query:  MSHSVKIYDTCIGCTQCVRACPTDVLEMIPWGGY-------------CVGCKRCESACPTDFLSVRVYLWHETTRSMGLAY
        MSHSVKIYDTCIGCTQCVRACPTDVLEMIPWGG              CVGCKRCESACPTDFLSVRVYLWHETTRSMGLAY
Subjt:  MSHSVKIYDTCIGCTQCVRACPTDVLEMIPWGGY-------------CVGCKRCESACPTDFLSVRVYLWHETTRSMGLAY

G3ETV0 Photosystem I iron-sulfur center

7.6e-32

82.72

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Query:  MSHSVKIYDTCIGCTQCVRACPTDVLEMIPWGGY-------------CVGCKRCESACPTDFLSVRVYLWHETTRSMGLAY
        MSHSVKIYDTCIGCTQCVRACPTDVLEMIPWGG              CVGCKRCESACPTDFLSVRVYLWHETTRSMGLAY
Subjt:  MSHSVKIYDTCIGCTQCVRACPTDVLEMIPWGGY-------------CVGCKRCESACPTDFLSVRVYLWHETTRSMGLAY

SwissProt top hits

e value

%identity

Alignment

A4GGE7 Photosystem I iron-sulfur center

2.1e-34

82.72

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Query:  MSHSVKIYDTCIGCTQCVRACPTDVLEMIPWGGY-------------CVGCKRCESACPTDFLSVRVYLWHETTRSMGLAY
        MSHSVKIYDTCIGCTQCVRACPTDVLEMIPWGG              CVGCKRCESACPTDFLSVRVYLWHETTRSMGLAY
Subjt:  MSHSVKIYDTCIGCTQCVRACPTDVLEMIPWGGY-------------CVGCKRCESACPTDFLSVRVYLWHETTRSMGLAY

A4QJG7 Photosystem I iron-sulfur center

1.3e-33

81.48

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Query:  MSHSVKIYDTCIGCTQCVRACPTDVLEMIPWGGY-------------CVGCKRCESACPTDFLSVRVYLWHETTRSMGLAY
        MSHSVKIYDTCIGCTQCVRACPTDVLEMIPW G              CVGCKRCESACPTDFLSVRVYLWHETTRSMGLAY
Subjt:  MSHSVKIYDTCIGCTQCVRACPTDVLEMIPWGGY-------------CVGCKRCESACPTDFLSVRVYLWHETTRSMGLAY

A4QJQ1 Photosystem I iron-sulfur center

1.3e-33

81.48

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Query:  MSHSVKIYDTCIGCTQCVRACPTDVLEMIPWGGY-------------CVGCKRCESACPTDFLSVRVYLWHETTRSMGLAY
        MSHSVKIYDTCIGCTQCVRACPTDVLEMIPW G              CVGCKRCESACPTDFLSVRVYLWHETTRSMGLAY
Subjt:  MSHSVKIYDTCIGCTQCVRACPTDVLEMIPWGGY-------------CVGCKRCESACPTDFLSVRVYLWHETTRSMGLAY

P10793 Photosystem I iron-sulfur center

2.1e-34

82.72

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Query:  MSHSVKIYDTCIGCTQCVRACPTDVLEMIPWGGY-------------CVGCKRCESACPTDFLSVRVYLWHETTRSMGLAY
        MSHSVKIYDTCIGCTQCVRACPTDVLEMIPWGG              CVGCKRCESACPTDFLSVRVYLWHETTRSMGLAY
Subjt:  MSHSVKIYDTCIGCTQCVRACPTDVLEMIPWGGY-------------CVGCKRCESACPTDFLSVRVYLWHETTRSMGLAY

P42046 Photosystem I iron-sulfur center

2.1e-34

82.72

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Query:  MSHSVKIYDTCIGCTQCVRACPTDVLEMIPWGGY-------------CVGCKRCESACPTDFLSVRVYLWHETTRSMGLAY
        MSHSVKIYDTCIGCTQCVRACPTDVLEMIPWGG              CVGCKRCESACPTDFLSVRVYLWHETTRSMGLAY
Subjt:  MSHSVKIYDTCIGCTQCVRACPTDVLEMIPWGGY-------------CVGCKRCESACPTDFLSVRVYLWHETTRSMGLAY

Arabidopsis top hits

e value

%identity

Alignment

ATCG01060.1 iron-sulfur cluster binding;electron carriers;4 iron, 4 sulfur cluster binding

9.5e-35

81.48

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Query:  MSHSVKIYDTCIGCTQCVRACPTDVLEMIPWGGY-------------CVGCKRCESACPTDFLSVRVYLWHETTRSMGLAY
        MSHSVKIYDTCIGCTQCVRACPTDVLEMIPW G              CVGCKRCESACPTDFLSVRVYLWHETTRSMGLAY
Subjt:  MSHSVKIYDTCIGCTQCVRACPTDVLEMIPWGGY-------------CVGCKRCESACPTDFLSVRVYLWHETTRSMGLAY

ATCG01090.1 NADPH dehydrogenases

1.3e-04

33.87

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Query:  YDTCIGCTQCVRACPTDVLEMIPWG-----------------GYCVGCKRCESACPTDFLSV
        +D CI C  CVR CP D L ++ W                  G C+ C  C   CPT+ LS+
Subjt:  YDTCIGCTQCVRACPTDVLEMIPWG-----------------GYCVGCKRCESACPTDFLSV

Sequences

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CDS sequence

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ATGTCACATTCCGTAAAGATTTATGATACATGTATAGGGTGTACTCAATGTGTACGAGCTTGCCCCACAGATGTATTAGAAATGATACCTTGGGGCGGATATTGTGTTGG
TTGTAAGAGATGTGAATCTGCTTGTCCGACAGATTTCTTGAGTGTTCGCGTTTATTTATGGCATGAAACAACTCGAAGCATGGGTCTAGCTTATTGA

mRNA sequence

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Protein sequence

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MSHSVKIYDTCIGCTQCVRACPTDVLEMIPWGGYCVGCKRCESACPTDFLSVRVYLWHETTRSMGLAY

Sed0012820 (gene) of Chayote v1 genome