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Sed0012858 (gene) of Chayote v1 genome

Gene IDSed0012858
OrganismSechium edule (Chayote v1)
DescriptionE3 ubiquitin-protein ligase RING1-like
Genome locationLG11:395174..395831
RNA-Seq ExpressionSed0012858
SyntenySed0012858
Gene Ontology termsGO:0006511 - ubiquitin-dependent protein catabolic process (biological process)
GO:0016567 - protein ubiquitination (biological process)
GO:0005737 - cytoplasm (cellular component)
GO:0061630 - ubiquitin protein ligase activity (molecular function)
InterPro domainsIPR001841 - Zinc finger, RING-type
IPR013083 - Zinc finger, RING/FYVE/PHD-type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6599476.1 E3 ubiquitin-protein ligase RING1-like protein, partial [Cucurbita argyrosperma subsp. sororia]1.9e-3468.63Show/hide
Query:  YPIESLFDLDMVLSGSDDLGCFHVGATDSFVAELPLVAADVCVICMEDFQPGEAGKKIPCGHVYHEPCISSWLAVGDCCPLCRRLVAAHSPEVDASSGLI
        YPIE LFDLDMVLSG+DD GC  + A+DS VA+LP V ADVC +C+EDF+P E GK+IPCGHVYHE CISSWLAV +CCPLCR L++   PE   SS LI
Subjt:  YPIESLFDLDMVLSGSDDLGCFHVGATDSFVAELPLVAADVCVICMEDFQPGEAGKKIPCGHVYHEPCISSWLAVGDCCPLCRRLVAAHSPEVDASSGLI

Query:  RR
        RR
Subjt:  RR

KAG7030453.1 E3 ubiquitin-protein ligase RING1, partial [Cucurbita argyrosperma subsp. argyrosperma]1.9e-3468.63Show/hide
Query:  YPIESLFDLDMVLSGSDDLGCFHVGATDSFVAELPLVAADVCVICMEDFQPGEAGKKIPCGHVYHEPCISSWLAVGDCCPLCRRLVAAHSPEVDASSGLI
        YPIE LFDLDMVLSG+DD GC  + A+DS VA+LP V ADVC +C+EDF+P E GK+IPCGHVYHE CISSWLAV +CCPLCR L++   PE   SS LI
Subjt:  YPIESLFDLDMVLSGSDDLGCFHVGATDSFVAELPLVAADVCVICMEDFQPGEAGKKIPCGHVYHEPCISSWLAVGDCCPLCRRLVAAHSPEVDASSGLI

Query:  RR
        RR
Subjt:  RR

XP_022946863.1 E3 ubiquitin-protein ligase RING1-like [Cucurbita moschata]8.5e-3569.61Show/hide
Query:  YPIESLFDLDMVLSGSDDLGCFHVGATDSFVAELPLVAADVCVICMEDFQPGEAGKKIPCGHVYHEPCISSWLAVGDCCPLCRRLVAAHSPEVDASSGLI
        YPIE LFDLDMVLSG+DD GC  + A+DS VA+LP V ADVC +C+EDF+P E GK+IPCGHVYHE CISSWLAV +CCPLCR L+A   PE   SS LI
Subjt:  YPIESLFDLDMVLSGSDDLGCFHVGATDSFVAELPLVAADVCVICMEDFQPGEAGKKIPCGHVYHEPCISSWLAVGDCCPLCRRLVAAHSPEVDASSGLI

Query:  RR
        RR
Subjt:  RR

XP_023545409.1 E3 ubiquitin-protein ligase RING1-like [Cucurbita pepo subsp. pepo]8.5e-3569.61Show/hide
Query:  YPIESLFDLDMVLSGSDDLGCFHVGATDSFVAELPLVAADVCVICMEDFQPGEAGKKIPCGHVYHEPCISSWLAVGDCCPLCRRLVAAHSPEVDASSGLI
        YPIE LFDLDMVLSG+DD GC  + A+DS VA+LP V ADVC +C+EDF+P E GK+IPCGHVYHE CISSWLAV +CCPLCR L+A   PE   SS LI
Subjt:  YPIESLFDLDMVLSGSDDLGCFHVGATDSFVAELPLVAADVCVICMEDFQPGEAGKKIPCGHVYHEPCISSWLAVGDCCPLCRRLVAAHSPEVDASSGLI

Query:  RR
        RR
Subjt:  RR

XP_038877422.1 E3 ubiquitin-protein ligase RNF181-like [Benincasa hispida]1.1e-3464.71Show/hide
Query:  MAAAAVL---------PYPIESLFDLDMVLSGSDDLGCFHVGATDSFVAELPLVAADVCVICMEDFQPGEAGKKIPCGHVYHEPCISSWLAVGDCCPLCR
        MAAAAV+          YPIE LFDLDMVLSG+DD GC  + ATDS VA+LP+V ADVC +C+EDF P EAGK+IPCGHVYHE CISSWL V DCCPLCR
Subjt:  MAAAAVL---------PYPIESLFDLDMVLSGSDDLGCFHVGATDSFVAELPLVAADVCVICMEDFQPGEAGKKIPCGHVYHEPCISSWLAVGDCCPLCR

Query:  RLVAAHSPEVDASSGLIRR
          VA   P+    S LIRR
Subjt:  RLVAAHSPEVDASSGLIRR

TrEMBL top hitse value%identityAlignment
A0A0A0LKR7 RING-type domain-containing protein7.7e-3463.03Show/hide
Query:  MAAAAVL---------PYPIESLFDLDMVLSGSDDLGCFHVGATDSFVAELPLVAADVCVICMEDFQPGEAGKKIPCGHVYHEPCISSWLAVGDCCPLCR
        MAAAAV+         PYPIE LFDLD VLSG+DDLGC  +  +DS VA+ P V ADVC +C++DF P EAGK+IPCGHVYHE CISSWL V DCCPLCR
Subjt:  MAAAAVL---------PYPIESLFDLDMVLSGSDDLGCFHVGATDSFVAELPLVAADVCVICMEDFQPGEAGKKIPCGHVYHEPCISSWLAVGDCCPLCR

Query:  RLVAAHSPEVDASSGLIRR
         LVA   P+    S LIRR
Subjt:  RLVAAHSPEVDASSGLIRR

A0A1S4DZX3 RING-H2 finger protein ATL5-like9.4e-3261.67Show/hide
Query:  MAAAAVL---------PYPIESLFDLDMVLSGSDDLGC-FHVGATDSFVAELPLVAADVCVICMEDFQPGEAGKKIPCGHVYHEPCISSWLAVGDCCPLC
        MAAAAV+         PYPIE LFDLD VLSG+DDL C   +  +DS VA+ P V ADVC +C++DF+P EAGK+IPCGHVYHE CISSWL V DCCPLC
Subjt:  MAAAAVL---------PYPIESLFDLDMVLSGSDDLGC-FHVGATDSFVAELPLVAADVCVICMEDFQPGEAGKKIPCGHVYHEPCISSWLAVGDCCPLC

Query:  RRLVAAHSPEVDASSGLIRR
        R LVA   P+    S LIRR
Subjt:  RRLVAAHSPEVDASSGLIRR

A0A5A7V2P4 RING-H2 finger protein ATL5-like9.4e-3261.67Show/hide
Query:  MAAAAVL---------PYPIESLFDLDMVLSGSDDLGC-FHVGATDSFVAELPLVAADVCVICMEDFQPGEAGKKIPCGHVYHEPCISSWLAVGDCCPLC
        MAAAAV+         PYPIE LFDLD VLSG+DDL C   +  +DS VA+ P V ADVC +C++DF+P EAGK+IPCGHVYHE CISSWL V DCCPLC
Subjt:  MAAAAVL---------PYPIESLFDLDMVLSGSDDLGC-FHVGATDSFVAELPLVAADVCVICMEDFQPGEAGKKIPCGHVYHEPCISSWLAVGDCCPLC

Query:  RRLVAAHSPEVDASSGLIRR
        R LVA   P+    S LIRR
Subjt:  RRLVAAHSPEVDASSGLIRR

A0A6J1DM93 E3 ubiquitin-protein ligase RHA1B-like5.5e-3264.86Show/hide
Query:  MAAAAVL---------PYPIESLFDLDMVLSGSDDLGCFHVGA---TDSFVAELPLVAADVCVICMEDFQPGEAGKKIPCGHVYHEPCISSWLAVGDCCP
        MAA AVL          YP+E LFDLDMVLSG DD GC HV A   +DS VA+LP V ADVC +C EDF+  E GK+IPCGHVYHEPCISSWLAV DCCP
Subjt:  MAAAAVL---------PYPIESLFDLDMVLSGSDDLGCFHVGA---TDSFVAELPLVAADVCVICMEDFQPGEAGKKIPCGHVYHEPCISSWLAVGDCCP

Query:  LCRRLVAAHSP
        LCRR V    P
Subjt:  LCRRLVAAHSP

A0A6J1G511 E3 ubiquitin-protein ligase RING1-like4.1e-3569.61Show/hide
Query:  YPIESLFDLDMVLSGSDDLGCFHVGATDSFVAELPLVAADVCVICMEDFQPGEAGKKIPCGHVYHEPCISSWLAVGDCCPLCRRLVAAHSPEVDASSGLI
        YPIE LFDLDMVLSG+DD GC  + A+DS VA+LP V ADVC +C+EDF+P E GK+IPCGHVYHE CISSWLAV +CCPLCR L+A   PE   SS LI
Subjt:  YPIESLFDLDMVLSGSDDLGCFHVGATDSFVAELPLVAADVCVICMEDFQPGEAGKKIPCGHVYHEPCISSWLAVGDCCPLCRRLVAAHSPEVDASSGLI

Query:  RR
        RR
Subjt:  RR

SwissProt top hitse value%identityAlignment
O22283 Probable E3 ubiquitin-protein ligase RHC2A2.8e-0934.62Show/hide
Query:  CFHVGATDSFVAELPLVAADV----------CVICMEDFQPGEAGKKIPCGHVYHEPCISSWLAVGDCCPLCRRLVAA
        C H  A+ S +  LPL+  D           C +C E+F    + +++PC H+YH  CI  WLA+ + CP+CR  + A
Subjt:  CFHVGATDSFVAELPLVAADV----------CVICMEDFQPGEAGKKIPCGHVYHEPCISSWLAVGDCCPLCRRLVAA

P0CH30 E3 ubiquitin-protein ligase RING19.8e-1033.33Show/hide
Query:  ATDSFVAELPLV---------AADVCVICMEDFQPGEAGKKIPCGHVYHEPCISSWLAVGDCCPLCRRLVAAHSPEVD
        A+ S +  LPLV           + C +CM+DF+ G   K++PC H+YH+ C+  WL + + CP+CR  +    P+ +
Subjt:  ATDSFVAELPLV---------AADVCVICMEDFQPGEAGKKIPCGHVYHEPCISSWLAVGDCCPLCRRLVAAHSPEVD

Q9DAH2 E3 ubiquitin-protein ligase ZNRF46.3e-0942.86Show/hide
Query:  ADVCVICMEDFQPGEAGKKIPCGHVYHEPCISSWL--AVGDCCPLCRRLVAA-HSPEVDASSG
        +D+C IC++D++ GE  K +PC H YH  CI  W   A    CPLC++ VA+ H    D S G
Subjt:  ADVCVICMEDFQPGEAGKKIPCGHVYHEPCISSWL--AVGDCCPLCRRLVAA-HSPEVDASSG

Q9SPL2 E3 ubiquitin-protein ligase CIP88.3e-0951.16Show/hide
Query:  VCVICMEDFQPGEAGKKIPCGHVYHEPCISSWLAVGDCCPLCR
        VC +C +    GE GKK+PCGH YH  CI  WL   + CP+CR
Subjt:  VCVICMEDFQPGEAGKKIPCGHVYHEPCISSWLAVGDCCPLCR

Q9VHI7 E3 ubiquitin-protein ligase Iruka3.7e-0943.4Show/hide
Query:  CVICMEDFQPGEAGKKIPCGHVYHEPCISSWLAVGDCCPLCRRLVAAHSPEVD
        C IC +DF+  E  +K+PC H+YHE CI  WL +   CP+CR+ +A    + D
Subjt:  CVICMEDFQPGEAGKKIPCGHVYHEPCISSWLAVGDCCPLCRRLVAAHSPEVD

Arabidopsis top hitse value%identityAlignment
AT1G68180.1 RING/U-box superfamily protein2.4e-1147.17Show/hide
Query:  VAELPLVAADVCVICMEDFQPGEAGKKIPCGHVYHEPCISSWLAVGDCCPLCR
        + +  LV   VC IC E+F+ GE GK++ C H+YH  CI SWL + + CP+CR
Subjt:  VAELPLVAADVCVICMEDFQPGEAGKKIPCGHVYHEPCISSWLAVGDCCPLCR

AT2G39720.1 RING-H2 finger C2A2.0e-1034.62Show/hide
Query:  CFHVGATDSFVAELPLVAADV----------CVICMEDFQPGEAGKKIPCGHVYHEPCISSWLAVGDCCPLCRRLVAA
        C H  A+ S +  LPL+  D           C +C E+F    + +++PC H+YH  CI  WLA+ + CP+CR  + A
Subjt:  CFHVGATDSFVAELPLVAADV----------CVICMEDFQPGEAGKKIPCGHVYHEPCISSWLAVGDCCPLCRRLVAA

AT2G44330.1 RING/U-box superfamily protein9.1e-1146.3Show/hide
Query:  CVICMEDFQPGEAGKKIPCGHVYHEPCISSWLAVGDCCPLCRRLVAAHSPEVDA
        C IC EDF  GE+ +++PC H+YH  CI  WL   + CPLCR  +   S E D+
Subjt:  CVICMEDFQPGEAGKKIPCGHVYHEPCISSWLAVGDCCPLCRRLVAAHSPEVDA

AT3G60080.1 RING/U-box superfamily protein4.5e-1048.84Show/hide
Query:  VCVICMEDFQPGEAGKKIPCGHVYHEPCISSWLAVGDCCPLCR
        +C +C EDF  GE+ +++PC H+YH  CI  WL+  + CPLCR
Subjt:  VCVICMEDFQPGEAGKKIPCGHVYHEPCISSWLAVGDCCPLCR

AT5G64920.1 COP1-interacting protein 85.9e-1051.16Show/hide
Query:  VCVICMEDFQPGEAGKKIPCGHVYHEPCISSWLAVGDCCPLCR
        VC +C +    GE GKK+PCGH YH  CI  WL   + CP+CR
Subjt:  VCVICMEDFQPGEAGKKIPCGHVYHEPCISSWLAVGDCCPLCR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGGCTGCTGCCGTGTTACCATATCCAATCGAATCCCTATTCGATCTGGATATGGTTCTTTCGGGATCCGATGATCTCGGGTGCTTCCACGTCGGCGCTACCGATTC
TTTCGTGGCGGAGTTGCCGCTGGTGGCGGCCGACGTTTGCGTCATTTGTATGGAAGACTTCCAGCCAGGCGAGGCCGGGAAAAAGATCCCCTGCGGGCACGTGTACCATG
AGCCTTGTATTTCCTCTTGGCTTGCCGTCGGCGACTGTTGTCCGCTTTGCCGGCGCCTTGTCGCCGCCCACTCGCCGGAGGTTGATGCTTCCTCCGGTTTGATCCGACGG
TAG
mRNA sequenceShow/hide mRNA sequence
GGTCTCTATATTTTAAAATTGAGCATTTTTATTCATCACATTTCAATAATACTTACTTTTAAAAAAAAAAATCAATAATACTCACTTTTAATTTTTGTATTCTTTTTAGT
TTTAGTTTTATACTTATTTTGCAATAAAATTGTATAAATATTGTATAGATCCCCCGCTATTTACTTCAATCTCCCAACTTCTTAAAACGACTCTCTCTTTTCTTCTTCTC
TCAAATCTCTTCGATGGCGGCTGCTGCCGTGTTACCATATCCAATCGAATCCCTATTCGATCTGGATATGGTTCTTTCGGGATCCGATGATCTCGGGTGCTTCCACGTCG
GCGCTACCGATTCTTTCGTGGCGGAGTTGCCGCTGGTGGCGGCCGACGTTTGCGTCATTTGTATGGAAGACTTCCAGCCAGGCGAGGCCGGGAAAAAGATCCCCTGCGGG
CACGTGTACCATGAGCCTTGTATTTCCTCTTGGCTTGCCGTCGGCGACTGTTGTCCGCTTTGCCGGCGCCTTGTCGCCGCCCACTCGCCGGAGGTTGATGCTTCCTCCGG
TTTGATCCGACGGTAGAGCTTTTTTTGTGAGGTTTGGTTGGATCAAATAATGTATTGTGAATGCGACTCTTTGCCAAATTATGAAACTATAGCTGACAGTTGAACAAA
Protein sequenceShow/hide protein sequence
MAAAAVLPYPIESLFDLDMVLSGSDDLGCFHVGATDSFVAELPLVAADVCVICMEDFQPGEAGKKIPCGHVYHEPCISSWLAVGDCCPLCRRLVAAHSPEVDASSGLIRR