CuGenDBv2

Gene ID	Sed0012877
Organism	Sechium edule (Chayote v1)
Description	Complex 1 LYR protein
Genome location	LG12:4454489..4457068
RNA-Seq Expression	Sed0012877
Synteny	Sed0012877
Gene Ontology terms	NA
InterPro domains	IPR008011 - Complex 1 LYR protein

Homology

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GenBank top hits

e value

%identity

Alignment

XP_004147626.1 uncharacterized protein LOC101203751 [Cucumis sativus]

5.2e-38

87.91

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Query:  MPSLQTALPPELANNVIRLYRECLRRAKFIGYQQHNTDLVVSMVRQQFRKNMHETDPEKIQKMKDDAARGLINHILHESERMSGRKFSQSS
        MPSLQTALPPELANNVIRLYRECLRRAKF+G++QHNT+L+V MVRQQF+KNMHETDPEKIQKMKDDAARGLINH+L+E ERMSG+KFSQSS
Subjt:  MPSLQTALPPELANNVIRLYRECLRRAKFIGYQQHNTDLVVSMVRQQFRKNMHETDPEKIQKMKDDAARGLINHILHESERMSGRKFSQSS

XP_022138283.1 uncharacterized protein LOC111009499 [Momordica charantia]

7.2e-40

93.41

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Query:  MPSLQTALPPELANNVIRLYRECLRRAKFIGYQQHNTDLVVSMVRQQFRKNMHETDPEKIQKMKDDAARGLINHILHESERMSGRKFSQSS
        MPSLQTALPPELANNVIRLYRECLRRAK+IG+QQHNT+LVVSMVRQQFRKNMHETDPEKIQK+KDDAARGLINHIL+ESER+SGRKFSQSS
Subjt:  MPSLQTALPPELANNVIRLYRECLRRAKFIGYQQHNTDLVVSMVRQQFRKNMHETDPEKIQKMKDDAARGLINHILHESERMSGRKFSQSS

XP_022964695.1 uncharacterized protein LOC111464671 [Cucurbita moschata]

8.0e-39

91.21

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Query:  MPSLQTALPPELANNVIRLYRECLRRAKFIGYQQHNTDLVVSMVRQQFRKNMHETDPEKIQKMKDDAARGLINHILHESERMSGRKFSQSS
        MPSLQTALPPELANNVIRLYRECLRRAKFIG++QHNTDLVVSMV+QQFRKNMHETDPEKIQK+KDDAARGLINHIL+ESER++GRK SQSS
Subjt:  MPSLQTALPPELANNVIRLYRECLRRAKFIGYQQHNTDLVVSMVRQQFRKNMHETDPEKIQKMKDDAARGLINHILHESERMSGRKFSQSS

XP_022972196.1 uncharacterized protein LOC111470803 [Cucurbita maxima]

1.8e-38

90.11

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Query:  MPSLQTALPPELANNVIRLYRECLRRAKFIGYQQHNTDLVVSMVRQQFRKNMHETDPEKIQKMKDDAARGLINHILHESERMSGRKFSQSS
        MPSLQTALPPELANNVIRLYRECLRRAK+IG++QHNTDLVVSMV+QQFRKNMHETDPEKIQK+KDDAARGLINHIL+ESER++GRK SQSS
Subjt:  MPSLQTALPPELANNVIRLYRECLRRAKFIGYQQHNTDLVVSMVRQQFRKNMHETDPEKIQKMKDDAARGLINHILHESERMSGRKFSQSS

XP_038878962.1 uncharacterized protein LOC120071039 [Benincasa hispida]

6.1e-39

92.31

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Query:  MPSLQTALPPELANNVIRLYRECLRRAKFIGYQQHNTDLVVSMVRQQFRKNMHETDPEKIQKMKDDAARGLINHILHESERMSGRKFSQSS
        MPSLQTALPPELANNVIRLYRECLRRAK+IG+QQHNT+L+VSMVRQQFRKNM ETDPEKIQK+KDDAARGLINHIL+ESERMSGRKFSQSS
Subjt:  MPSLQTALPPELANNVIRLYRECLRRAKFIGYQQHNTDLVVSMVRQQFRKNMHETDPEKIQKMKDDAARGLINHILHESERMSGRKFSQSS

TrEMBL top hits

e value

%identity

Alignment

A0A1U8AWB6 uncharacterized protein LOC104607091 isoform X2

9.5e-38

87.91

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Query:  MPSLQTALPPELANNVIRLYRECLRRAKFIGYQQHNTDLVVSMVRQQFRKNMHETDPEKIQKMKDDAARGLINHILHESERMSGRKFSQSS
        MPSLQTALPPELANNVIRLYRECLRRA+FIG++QHNT+LVV MVRQQF+K+MHETDPEKIQK+KDDAARGLINHIL+ESE+MSGRKFS SS
Subjt:  MPSLQTALPPELANNVIRLYRECLRRAKFIGYQQHNTDLVVSMVRQQFRKNMHETDPEKIQKMKDDAARGLINHILHESERMSGRKFSQSS

A0A6J1C9Q7 uncharacterized protein LOC111009499

3.5e-40

93.41

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Query:  MPSLQTALPPELANNVIRLYRECLRRAKFIGYQQHNTDLVVSMVRQQFRKNMHETDPEKIQKMKDDAARGLINHILHESERMSGRKFSQSS
        MPSLQTALPPELANNVIRLYRECLRRAK+IG+QQHNT+LVVSMVRQQFRKNMHETDPEKIQK+KDDAARGLINHIL+ESER+SGRKFSQSS
Subjt:  MPSLQTALPPELANNVIRLYRECLRRAKFIGYQQHNTDLVVSMVRQQFRKNMHETDPEKIQKMKDDAARGLINHILHESERMSGRKFSQSS

A0A6J1HLJ6 uncharacterized protein LOC111464671

3.9e-39

91.21

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Query:  MPSLQTALPPELANNVIRLYRECLRRAKFIGYQQHNTDLVVSMVRQQFRKNMHETDPEKIQKMKDDAARGLINHILHESERMSGRKFSQSS
        MPSLQTALPPELANNVIRLYRECLRRAKFIG++QHNTDLVVSMV+QQFRKNMHETDPEKIQK+KDDAARGLINHIL+ESER++GRK SQSS
Subjt:  MPSLQTALPPELANNVIRLYRECLRRAKFIGYQQHNTDLVVSMVRQQFRKNMHETDPEKIQKMKDDAARGLINHILHESERMSGRKFSQSS

A0A6J1I5B4 uncharacterized protein LOC111470803

8.6e-39

90.11

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Query:  MPSLQTALPPELANNVIRLYRECLRRAKFIGYQQHNTDLVVSMVRQQFRKNMHETDPEKIQKMKDDAARGLINHILHESERMSGRKFSQSS
        MPSLQTALPPELANNVIRLYRECLRRAK+IG++QHNTDLVVSMV+QQFRKNMHETDPEKIQK+KDDAARGLINHIL+ESER++GRK SQSS
Subjt:  MPSLQTALPPELANNVIRLYRECLRRAKFIGYQQHNTDLVVSMVRQQFRKNMHETDPEKIQKMKDDAARGLINHILHESERMSGRKFSQSS

D7T656 Uncharacterized protein

1.6e-37

86.81

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Query:  MPSLQTALPPELANNVIRLYRECLRRAKFIGYQQHNTDLVVSMVRQQFRKNMHETDPEKIQKMKDDAARGLINHILHESERMSGRKFSQSS
        MPSLQTALPPELANNVIRLYRECLRRA++IG+QQHNT+LVV MVRQQF+K+MHETDPEKIQK+KDDAARGLINHIL+ESE+MSGRKFS+ S
Subjt:  MPSLQTALPPELANNVIRLYRECLRRAKFIGYQQHNTDLVVSMVRQQFRKNMHETDPEKIQKMKDDAARGLINHILHESERMSGRKFSQSS

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT3G17300.1 unknown protein

8.0e-37

80.22

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Query:  MPSLQTALPPELANNVIRLYRECLRRAKFIGYQQHNTDLVVSMVRQQFRKNMHETDPEKIQKMKDDAARGLINHILHESERMSGRKFSQSS
        MPSLQT+LPPELANNV+RLYRECLRRAKFIG QQHNT+LVV MVRQQF+K+M+ETDPEKIQK+KDDAARGLINH+L ES +++G K SQ S
Subjt:  MPSLQTALPPELANNVIRLYRECLRRAKFIGYQQHNTDLVVSMVRQQFRKNMHETDPEKIQKMKDDAARGLINHILHESERMSGRKFSQSS

AT3G17300.2 unknown protein

2.2e-18

74.14

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Query:  QHNTDLVVSMVRQQFRKNMHETDPEKIQKMKDDAARGLINHILHESERMSGRKFSQSS
        QHNT+LVV MVRQQF+K+M+ETDPEKIQK+KDDAARGLINH+L ES +++G K SQ S
Subjt:  QHNTDLVVSMVRQQFRKNMHETDPEKIQKMKDDAARGLINHILHESERMSGRKFSQSS

Sequences

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CDS sequence

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ATGCCATCTTTACAGACTGCTCTTCCTCCTGAGCTTGCCAATAATGTCATTAGGCTGTACCGCGAATGCCTTAGAAGAGCTAAGTTTATAGGTTATCAGCAACATAACAC
CGATCTTGTTGTGAGTATGGTGAGACAACAATTCAGAAAGAATATGCATGAGACTGATCCAGAGAAGATTCAGAAGATGAAAGATGATGCGGCAAGGGGACTCATAAACC
ATATTCTACATGAATCTGAGAGAATGTCAGGTCGAAAATTCAGCCAAAGTTCTTGA

mRNA sequence

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ATTAAACTAGTTTATAACCGAATTATGTCGTGCGCCACTGGGTTCATTTATTCCTAATCAATAGTGATTCTTCAAATCAAATTGAGGAGCTTCCTTGTTTATTTTTGTTC
ATCATTTTCCCTATTTTTCTGCAAAGCGCTCTACAAAGCCACGAGGAGGAATCGCAGGTGTAAGTGTGAAAAGGGTGGAAATGCCATCTTTACAGACTGCTCTTCCTCCT
GAGCTTGCCAATAATGTCATTAGGCTGTACCGCGAATGCCTTAGAAGAGCTAAGTTTATAGGTTATCAGCAACATAACACCGATCTTGTTGTGAGTATGGTGAGACAACA
ATTCAGAAAGAATATGCATGAGACTGATCCAGAGAAGATTCAGAAGATGAAAGATGATGCGGCAAGGGGACTCATAAACCATATTCTACATGAATCTGAGAGAATGTCAG
GTCGAAAATTCAGCCAAAGTTCTTGATGTTATTAAGAATGATATCAAGTATAAGGTCTCGCCATTGAAACTTCAGATATTGTAGGGGAATAAGATGGCTGATGATGAAAT
TACTTCTGGGAGGTTATTTTTGCTTTTCCTTGCATATTTATCTTCAGCAATTGTCTTAAACTATTCCCTTTCTACGATTTGCTCAAGGAAATCATGCATTTTTCAGTTAA
CTGTTGAACTTCTCCCTATCTAAAATCTGCACTTGATCATGAACAAAGTGGATTTTTTTAGAAAGATATGAGACACATACTTGACCAACTCTTTAAGTCTTTATGGGCTT
TTCTTTTAATTCTAGATATTACTTAACCTGAGGATATTCAGGTATGTGAATCATGAGGGCATTTTGATATGGTGCTCATGATGCGGTAATTGTTTTCTTTTAATAAGAAA
TAATTCGGAC

Protein sequence

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MPSLQTALPPELANNVIRLYRECLRRAKFIGYQQHNTDLVVSMVRQQFRKNMHETDPEKIQKMKDDAARGLINHILHESERMSGRKFSQSS

Sed0012877 (gene) of Chayote v1 genome