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Sed0012878 (gene) of Chayote v1 genome

Gene IDSed0012878
OrganismSechium edule (Chayote v1)
DescriptionMYB transcription factor
Genome locationLG12:1001192..1001963
RNA-Seq ExpressionSed0012878
SyntenySed0012878
Gene Ontology termsNA
InterPro domainsIPR001005 - SANT/Myb domain
IPR009057 - Homeobox-like domain superfamily
IPR017930 - Myb domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6582606.1 Transcription factor MYB17, partial [Cucurbita argyrosperma subsp. sororia]3.8e-2095.83Show/hide
Query:  MGRTPCCDKKGLKKGPWTSEEDELLINYIKQNNGHGSWRSLPKLAGLV
        MGRTPCCDKKGLKKGPWTSEEDELLINYIK+NNGHGSWRSLPKLAGL+
Subjt:  MGRTPCCDKKGLKKGPWTSEEDELLINYIKQNNGHGSWRSLPKLAGLV

XP_016898895.1 PREDICTED: transcription repressor MYB6 [Cucumis melo]2.9e-2095.83Show/hide
Query:  MGRTPCCDKKGLKKGPWTSEEDELLINYIKQNNGHGSWRSLPKLAGLV
        MGRTPCCDKKGLKKGPWTSEEDELLINYIK+NNGHGSWRSLPKLAGL+
Subjt:  MGRTPCCDKKGLKKGPWTSEEDELLINYIKQNNGHGSWRSLPKLAGLV

XP_022147297.1 transcription factor MYB41 [Momordica charantia]1.0e-2095.92Show/hide
Query:  EMGRTPCCDKKGLKKGPWTSEEDELLINYIKQNNGHGSWRSLPKLAGLV
        EMGRTPCCDKKGLKKGPWTSEEDELLINYIK+NNGHGSWRSLPKLAGL+
Subjt:  EMGRTPCCDKKGLKKGPWTSEEDELLINYIKQNNGHGSWRSLPKLAGLV

XP_023526750.1 transcription factor MYB41-like isoform X2 [Cucurbita pepo subsp. pepo]3.8e-2095.83Show/hide
Query:  MGRTPCCDKKGLKKGPWTSEEDELLINYIKQNNGHGSWRSLPKLAGLV
        MGRTPCCDKKGLKKGPWTSEEDELLINYIK+NNGHGSWRSLPKLAGL+
Subjt:  MGRTPCCDKKGLKKGPWTSEEDELLINYIKQNNGHGSWRSLPKLAGLV

XP_038884956.1 transcription factor MYB17 [Benincasa hispida]2.9e-2095.83Show/hide
Query:  MGRTPCCDKKGLKKGPWTSEEDELLINYIKQNNGHGSWRSLPKLAGLV
        MGRTPCCDKKGLKKGPWTSEEDELLINYIK+NNGHGSWRSLPKLAGL+
Subjt:  MGRTPCCDKKGLKKGPWTSEEDELLINYIKQNNGHGSWRSLPKLAGLV

TrEMBL top hitse value%identityAlignment
A0A0A0L7H5 HTH myb-type domain-containing protein1.8e-2874.12Show/hide
Query:  KLEVEILKDPQGNRGEGLVFS---------CFEMGRTPCCDKKGLKKGPWTSEEDELLINYIKQNNGHGSWRSLPKLAGLVFHNF
        K E  +L+DPQGN GEGLV S           EMGRTPCCDKKGLKKGPWTSEEDELLINYI++NNGHGSWRSLPKLAGLV  NF
Subjt:  KLEVEILKDPQGNRGEGLVFS---------CFEMGRTPCCDKKGLKKGPWTSEEDELLINYIKQNNGHGSWRSLPKLAGLVFHNF

A0A1S4DT66 transcription repressor MYB61.4e-2095.83Show/hide
Query:  MGRTPCCDKKGLKKGPWTSEEDELLINYIKQNNGHGSWRSLPKLAGLV
        MGRTPCCDKKGLKKGPWTSEEDELLINYIK+NNGHGSWRSLPKLAGL+
Subjt:  MGRTPCCDKKGLKKGPWTSEEDELLINYIKQNNGHGSWRSLPKLAGLV

A0A5D3D1U6 Transcription repressor MYB61.4e-2095.83Show/hide
Query:  MGRTPCCDKKGLKKGPWTSEEDELLINYIKQNNGHGSWRSLPKLAGLV
        MGRTPCCDKKGLKKGPWTSEEDELLINYIK+NNGHGSWRSLPKLAGL+
Subjt:  MGRTPCCDKKGLKKGPWTSEEDELLINYIKQNNGHGSWRSLPKLAGLV

A0A6J1D0Y2 transcription factor MYB414.9e-2195.92Show/hide
Query:  EMGRTPCCDKKGLKKGPWTSEEDELLINYIKQNNGHGSWRSLPKLAGLV
        EMGRTPCCDKKGLKKGPWTSEEDELLINYIK+NNGHGSWRSLPKLAGL+
Subjt:  EMGRTPCCDKKGLKKGPWTSEEDELLINYIKQNNGHGSWRSLPKLAGLV

A0A6J1ITE6 transcription factor MYB41-like isoform X11.8e-2095.83Show/hide
Query:  MGRTPCCDKKGLKKGPWTSEEDELLINYIKQNNGHGSWRSLPKLAGLV
        MGRTPCCDKKGLKKGPWTSEEDELLINYIK+NNGHGSWRSLPKLAGL+
Subjt:  MGRTPCCDKKGLKKGPWTSEEDELLINYIKQNNGHGSWRSLPKLAGLV

SwissProt top hitse value%identityAlignment
Q9LE63 Transcription factor MYB1068.5e-1572.34Show/hide
Query:  MGRTPCCDKKGLKKGPWTSEEDELLINYIKQNNGHGSWRSLPKLAGL
        MGR+PCCDK GLKKGPWT EED+ L+ YI++ +GHGSWRSLP+ AGL
Subjt:  MGRTPCCDKKGLKKGPWTSEEDELLINYIKQNNGHGSWRSLPKLAGL

Q9LNC9 Transcription factor MYB134.2e-1468.75Show/hide
Query:  MGRTPCCDKKGLKKGPWTSEEDELLINYIKQNNGHGSWRSLPKLAGLV
        MGR PCC+K GLKKGPW++EED +LINYI   +GH +WR+LPKLAGL+
Subjt:  MGRTPCCDKKGLKKGPWTSEEDELLINYIKQNNGHGSWRSLPKLAGLV

Q9LXF1 Transcription factor MYB161.1e-1472.34Show/hide
Query:  MGRTPCCDKKGLKKGPWTSEEDELLINYIKQNNGHGSWRSLPKLAGL
        MGR+PCCDK GLKKGPWT EED+ L+ YI++ +GHGSWRSLP+ AGL
Subjt:  MGRTPCCDKKGLKKGPWTSEEDELLINYIKQNNGHGSWRSLPKLAGL

Q9M2D9 Transcription factor MYB174.1e-1779.17Show/hide
Query:  MGRTPCCDKKGLKKGPWTSEEDELLINYIKQNNGHGSWRSLPKLAGLV
        MGRTPCCDK GLKKGPWT EEDE+L+ +IK+ NGHGSWR+LPKLAGL+
Subjt:  MGRTPCCDKKGLKKGPWTSEEDELLINYIKQNNGHGSWRSLPKLAGLV

Q9S9Z2 Transcription factor MYB931.1e-1472.34Show/hide
Query:  MGRTPCCDKKGLKKGPWTSEEDELLINYIKQNNGHGSWRSLPKLAGL
        MGR+PCCD+ GLKKGPWT EED+ LI+YI   +GHGSWR+LPKLA L
Subjt:  MGRTPCCDKKGLKKGPWTSEEDELLINYIKQNNGHGSWRSLPKLAGL

Arabidopsis top hitse value%identityAlignment
AT1G34670.1 myb domain protein 937.9e-1672.34Show/hide
Query:  MGRTPCCDKKGLKKGPWTSEEDELLINYIKQNNGHGSWRSLPKLAGL
        MGR+PCCD+ GLKKGPWT EED+ LI+YI   +GHGSWR+LPKLA L
Subjt:  MGRTPCCDKKGLKKGPWTSEEDELLINYIKQNNGHGSWRSLPKLAGL

AT3G02940.1 myb domain protein 1072.7e-1672.34Show/hide
Query:  MGRTPCCDKKGLKKGPWTSEEDELLINYIKQNNGHGSWRSLPKLAGL
        MGR+PCCD+ GLKKGPWT EED+ LIN+I++ +GHGSWR+LPK AGL
Subjt:  MGRTPCCDKKGLKKGPWTSEEDELLINYIKQNNGHGSWRSLPKLAGL

AT3G61250.1 myb domain protein 172.9e-1879.17Show/hide
Query:  MGRTPCCDKKGLKKGPWTSEEDELLINYIKQNNGHGSWRSLPKLAGLV
        MGRTPCCDK GLKKGPWT EEDE+L+ +IK+ NGHGSWR+LPKLAGL+
Subjt:  MGRTPCCDKKGLKKGPWTSEEDELLINYIKQNNGHGSWRSLPKLAGLV

AT5G16770.1 myb domain protein 94.6e-1672.34Show/hide
Query:  MGRTPCCDKKGLKKGPWTSEEDELLINYIKQNNGHGSWRSLPKLAGL
        MGR+PCCD+ GLKKGPWT EED+ LI++I Q +GHGSWR+LPK AGL
Subjt:  MGRTPCCDKKGLKKGPWTSEEDELLINYIKQNNGHGSWRSLPKLAGL

AT5G16770.2 myb domain protein 94.6e-1672.34Show/hide
Query:  MGRTPCCDKKGLKKGPWTSEEDELLINYIKQNNGHGSWRSLPKLAGL
        MGR+PCCD+ GLKKGPWT EED+ LI++I Q +GHGSWR+LPK AGL
Subjt:  MGRTPCCDKKGLKKGPWTSEEDELLINYIKQNNGHGSWRSLPKLAGL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAATTGGAAGTGGAAATTTTGAAAGACCCACAAGGGAACAGAGGTGAAGGCCTAGTCTTTTCATGTTTTGAGATGGGAAGAACACCTTGTTGTGATAAGAAGGGGCT
GAAGAAAGGGCCATGGACATCTGAAGAAGATGAGCTCCTTATTAATTATATAAAGCAAAATAATGGCCATGGAAGTTGGAGATCACTCCCCAAGCTTGCAGGTTTAGTGT
TCCACAATTTTCCCTTCTTCCCATTTGTCATCTCTCATTTTGCAGTCTTGTGTTTATCATGA
mRNA sequenceShow/hide mRNA sequence
ATGAAATTGGAAGTGGAAATTTTGAAAGACCCACAAGGGAACAGAGGTGAAGGCCTAGTCTTTTCATGTTTTGAGATGGGAAGAACACCTTGTTGTGATAAGAAGGGGCT
GAAGAAAGGGCCATGGACATCTGAAGAAGATGAGCTCCTTATTAATTATATAAAGCAAAATAATGGCCATGGAAGTTGGAGATCACTCCCCAAGCTTGCAGGTTTAGTGT
TCCACAATTTTCCCTTCTTCCCATTTGTCATCTCTCATTTTGCAGTCTTGTGTTTATCATGA
Protein sequenceShow/hide protein sequence
MKLEVEILKDPQGNRGEGLVFSCFEMGRTPCCDKKGLKKGPWTSEEDELLINYIKQNNGHGSWRSLPKLAGLVFHNFPFFPFVISHFAVLCLS