; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Sed0012881 (gene) of Chayote v1 genome

Gene IDSed0012881
OrganismSechium edule (Chayote v1)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Genome locationLG06:34158330..34160545
RNA-Seq ExpressionSed0012881
SyntenySed0012881
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0048297.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]9.3e-2653.33Show/hide
Query:  MSAMTAQSNYNQDNNWYPDSGATNHLTNNLGNLTVGSEYHGNSQVHVGNGAGLSISHLGYGTISSSS---HIFHLNKF------------VSQFASDNSV
        MSAM A  + N D+NWYPDSGATNHLT++L NL++GSEY G +Q++  NG+GL I+H G  + +SS+     F LN              VSQFA DN V
Subjt:  MSAMTAQSNYNQDNNWYPDSGATNHLTNNLGNLTVGSEYHGNSQVHVGNGAGLSISHLGYGTISSSS---HIFHLNKF------------VSQFASDNSV

Query:  FFEFHPTFCVVKALATGQVLLRRTLHDGLYLWYLE
        FFEFHPT C VK L TGQVLL+  L+DGLY + +E
Subjt:  FFEFHPTFCVVKALATGQVLLRRTLHDGLYLWYLE
KAF3618736.1 hypothetical protein FXO37_34048 [Capsicum annuum]2.5e-2350Show/hide
Query:  MSAMTAQSNYNQDNNWYPDSGATNHLTNNLGNLTVGSEYHGNSQVHVGNGAGLSISHLGYGTISSSSHIFHLNKF------------VSQFASDNSVFFE
        M+A+  Q +  +D+NWYPDSGAT+HLTN++ N+ V  EY GN Q+H+GNG GL+ISH G   +   S   HL+              V++F SDN V FE
Subjt:  MSAMTAQSNYNQDNNWYPDSGATNHLTNNLGNLTVGSEYHGNSQVHVGNGAGLSISHLGYGTISSSSHIFHLNKF------------VSQFASDNSVFFE

Query:  FHPTFCVVKALATGQVLLRRTLHDGL
        FHP FC+VK  ATG+VLLR TL  GL
Subjt:  FHPTFCVVKALATGQVLLRRTLHDGL
KAF3648741.1 hypothetical protein FXO38_18039 [Capsicum annuum]2.8e-2249.21Show/hide
Query:  MSAMTAQSNYNQDNNWYPDSGATNHLTNNLGNLTVGSEYHGNSQVHVGNGAGLSISHLGYGTISSSSHIFHLNKF------------VSQFASDNSVFFE
        M+A+  Q +  +D+NWYP SGAT+HLTN++ N+ V  EY GN Q+H+GNG GL+ISH G   +   S   HL+              V++F SDN V FE
Subjt:  MSAMTAQSNYNQDNNWYPDSGATNHLTNNLGNLTVGSEYHGNSQVHVGNGAGLSISHLGYGTISSSSHIFHLNKF------------VSQFASDNSVFFE

Query:  FHPTFCVVKALATGQVLLRRTLHDGL
        FHP FC+VK  ATG+VLLR TL  GL
Subjt:  FHPTFCVVKALATGQVLLRRTLHDGL
TYK10642.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]9.3e-2653.33Show/hide
Query:  MSAMTAQSNYNQDNNWYPDSGATNHLTNNLGNLTVGSEYHGNSQVHVGNGAGLSISHLGYGTISSSS---HIFHLNKF------------VSQFASDNSV
        MSAM A  + N D+NWYPDSGATNHLT++L NL++GSEY G +Q++  NG+GL I+H G  + +SS+     F LN              VSQFA DN V
Subjt:  MSAMTAQSNYNQDNNWYPDSGATNHLTNNLGNLTVGSEYHGNSQVHVGNGAGLSISHLGYGTISSSS---HIFHLNKF------------VSQFASDNSV

Query:  FFEFHPTFCVVKALATGQVLLRRTLHDGLYLWYLE
        FFEFHPT C VK L TGQVLL+  L+DGLY + +E
Subjt:  FFEFHPTFCVVKALATGQVLLRRTLHDGLYLWYLE
XP_022156747.1 uncharacterized protein LOC111023586 [Momordica charantia]8.7e-2446.81Show/hide
Query:  MSAMTAQSNYNQDNNWYPDSGATNHLTNNLGNLTVGSEYHGNSQVHVGNGAGLSISHLGYGTI------SSSSHIFHLNKF------------VSQFASD
        M AM   +++N+D  WYPDSGATNH+TN+ GN ++GS+YHGN ++ VGNG  LSISH+G   +      +SS  +FHL               +S FA D
Subjt:  MSAMTAQSNYNQDNNWYPDSGATNHLTNNLGNLTVGSEYHGNSQVHVGNGAGLSISHLGYGTI------SSSSHIFHLNKF------------VSQFASD

Query:  NSVFFEFHPTFCVVKALATGQVLLRRTLHDGLYLWYLECVS
        N VFFEFHP+   VK L TGQ+L + T+HD LY + L   S
Subjt:  NSVFFEFHPTFCVVKALATGQVLLRRTLHDGLYLWYLECVS
TrEMBL top hitse value%identityAlignment
A0A2G2YNJ0 Uncharacterized protein4.0e-2248.03Show/hide
Query:  MSAMTAQSNYNQDNNWYPDSGATNHLTNNLGNLTVGSEYHGNSQVHVGNGAGLSISHLGYGTISSSSHIFHLNKF------------VSQFASDNSVFFE
        M A+ AQ +   D+NWYP+SGAT++LTN++ N+ V  EY GN Q+H+GNG GL+ISH G   + + S   HL+              V+ F SDN V FE
Subjt:  MSAMTAQSNYNQDNNWYPDSGATNHLTNNLGNLTVGSEYHGNSQVHVGNGAGLSISHLGYGTISSSSHIFHLNKF------------VSQFASDNSVFFE

Query:  FHPTFCVVKALATGQVLLRRTLHDGLY
        FHP FC++K  ATG+V LR TL  GLY
Subjt:  FHPTFCVVKALATGQVLLRRTLHDGLY
A0A2G3ANU2 Uncharacterized protein1.2e-2350Show/hide
Query:  MSAMTAQSNYNQDNNWYPDSGATNHLTNNLGNLTVGSEYHGNSQVHVGNGAGLSISHLGYGTISSSSHIFHLNKF------------VSQFASDNSVFFE
        M+A+  Q +  +D+NWYPDSGAT+HLTN++ N+ V  EY GN Q+H+GNG GL+ISH G   +   S   HL+              V++F SDN V FE
Subjt:  MSAMTAQSNYNQDNNWYPDSGATNHLTNNLGNLTVGSEYHGNSQVHVGNGAGLSISHLGYGTISSSSHIFHLNKF------------VSQFASDNSVFFE

Query:  FHPTFCVVKALATGQVLLRRTLHDGL
        FHP FC+VK  ATG+VLLR TL  GL
Subjt:  FHPTFCVVKALATGQVLLRRTLHDGL
A0A5A7U233 Retrovirus-related Pol polyprotein from transposon TNT 1-944.5e-2653.33Show/hide
Query:  MSAMTAQSNYNQDNNWYPDSGATNHLTNNLGNLTVGSEYHGNSQVHVGNGAGLSISHLGYGTISSSS---HIFHLNKF------------VSQFASDNSV
        MSAM A  + N D+NWYPDSGATNHLT++L NL++GSEY G +Q++  NG+GL I+H G  + +SS+     F LN              VSQFA DN V
Subjt:  MSAMTAQSNYNQDNNWYPDSGATNHLTNNLGNLTVGSEYHGNSQVHVGNGAGLSISHLGYGTISSSS---HIFHLNKF------------VSQFASDNSV

Query:  FFEFHPTFCVVKALATGQVLLRRTLHDGLYLWYLE
        FFEFHPT C VK L TGQVLL+  L+DGLY + +E
Subjt:  FFEFHPTFCVVKALATGQVLLRRTLHDGLYLWYLE
A0A5D3CH97 Retrovirus-related Pol polyprotein from transposon TNT 1-944.5e-2653.33Show/hide
Query:  MSAMTAQSNYNQDNNWYPDSGATNHLTNNLGNLTVGSEYHGNSQVHVGNGAGLSISHLGYGTISSSS---HIFHLNKF------------VSQFASDNSV
        MSAM A  + N D+NWYPDSGATNHLT++L NL++GSEY G +Q++  NG+GL I+H G  + +SS+     F LN              VSQFA DN V
Subjt:  MSAMTAQSNYNQDNNWYPDSGATNHLTNNLGNLTVGSEYHGNSQVHVGNGAGLSISHLGYGTISSSS---HIFHLNKF------------VSQFASDNSV

Query:  FFEFHPTFCVVKALATGQVLLRRTLHDGLYLWYLE
        FFEFHPT C VK L TGQVLL+  L+DGLY + +E
Subjt:  FFEFHPTFCVVKALATGQVLLRRTLHDGLYLWYLE
A0A6J1DSS1 uncharacterized protein LOC1110235864.2e-2446.81Show/hide
Query:  MSAMTAQSNYNQDNNWYPDSGATNHLTNNLGNLTVGSEYHGNSQVHVGNGAGLSISHLGYGTI------SSSSHIFHLNKF------------VSQFASD
        M AM   +++N+D  WYPDSGATNH+TN+ GN ++GS+YHGN ++ VGNG  LSISH+G   +      +SS  +FHL               +S FA D
Subjt:  MSAMTAQSNYNQDNNWYPDSGATNHLTNNLGNLTVGSEYHGNSQVHVGNGAGLSISHLGYGTI------SSSSHIFHLNKF------------VSQFASD

Query:  NSVFFEFHPTFCVVKALATGQVLLRRTLHDGLYLWYLECVS
        N VFFEFHP+   VK L TGQ+L + T+HD LY + L   S
Subjt:  NSVFFEFHPTFCVVKALATGQVLLRRTLHDGLYLWYLECVS
SwissProt top hitse value%identityAlignment
Q94HW2 Retrovirus-related Pol polyprotein from transposon RE16.3e-0935.34Show/hide
Query:  NNWYPDSGATNHLTNNLGNLTVGSEYHGNSQVHVGNGAGLSISHLGYGTISSSSHIFHLNKF------------VSQFASDNSVFFEFHPTFCVVKALAT
        NNW  DSGAT+H+T++  NL++   Y G   V V +G+ + ISH G  ++S+ S   +L+              V +  + N V  EF P    VK L T
Subjt:  NNWYPDSGATNHLTNNLGNLTVGSEYHGNSQVHVGNGAGLSISHLGYGTISSSSHIFHLNKF------------VSQFASDNSVFFEFHPTFCVVKALAT

Query:  GQVLLRRTLHDGLYLW
        G  LL+    D LY W
Subjt:  GQVLLRRTLHDGLYLW
Q9ZT94 Retrovirus-related Pol polyprotein from transposon RE22.8e-0934.92Show/hide
Query:  MTAQSNYNQDNNWYPDSGATNHLTNNLGNLTVGSEYHGNSQVHVGNGAGLSISHLGYGTISSSSHIFHLNKF------------VSQFASDNSVFFEFHP
        +   S YN  NNW  DSGAT+H+T++  NL+    Y G   V + +G+ + I+H G  ++ +SS    LNK             V +  + N V  EF P
Subjt:  MTAQSNYNQDNNWYPDSGATNHLTNNLGNLTVGSEYHGNSQVHVGNGAGLSISHLGYGTISSSSHIFHLNKF------------VSQFASDNSVFFEFHP

Query:  TFCVVKALATGQVLLRRTLHDGLYLW
            VK L TG  LL+    D LY W
Subjt:  TFCVVKALATGQVLLRRTLHDGLYLW
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCAGCTATGACAGCGCAGTCCAACTATAACCAGGACAATAATTGGTATCCTGATTCCGGAGCGACGAATCACCTCACAAACAACTTGGGAAATCTCACAGTA
GGTTCTGAATATCACGGCAACAGTCAAGTCCACGTGGGCAACGGTGCAGGTTTATCTATATCTCATCTTGGTTATGGCACTATTTCATCTTCTTCTCATATTTTT
CATTTAAATAAATTTGTTTCTCAATTTGCTAGTGATAACTCTGTTTTCTTTGAATTTCATCCTACTTTTTGTGTTGTGAAGGCTTTAGCAACTGGTCAAGTGCTG
CTTCGAAGGACTCTCCATGATGGTCTCTACCTATGGTACCTCGAATGTGTGTCGTTTGCATCGTGCCATATCACAATTTTATCCCTATCCAGAAAAATTTATATA
ACGGGCATATGA
mRNA sequenceShow/hide mRNA sequence
ATGTCAGCTATGACAGCGCAGTCCAACTATAACCAGGACAATAATTGGTATCCTGATTCCGGAGCGACGAATCACCTCACAAACAACTTGGGAAATCTCACAGTA
GGTTCTGAATATCACGGCAACAGTCAAGTCCACGTGGGCAACGGTGCAGGTTTATCTATATCTCATCTTGGTTATGGCACTATTTCATCTTCTTCTCATATTTTT
CATTTAAATAAATTTGTTTCTCAATTTGCTAGTGATAACTCTGTTTTCTTTGAATTTCATCCTACTTTTTGTGTTGTGAAGGCTTTAGCAACTGGTCAAGTGCTG
CTTCGAAGGACTCTCCATGATGGTCTCTACCTATGGTACCTCGAATGTGTGTCGTTTGCATCGTGCCATATCACAATTTTATCCCTATCCAGAAAAATTTATATA
ACGGGCATATGA
Protein sequenceShow/hide protein sequence
MSAMTAQSNYNQDNNWYPDSGATNHLTNNLGNLTVGSEYHGNSQVHVGNGAGLSISHLGYGTISSSSHIFHLNKFVSQFASDNSVFFEFHPTFCVVKALATGQVL
LRRTLHDGLYLWYLECVSFASCHITILSLSRKIYITGI