CuGenDBv2

Gene ID	Sed0012883
Organism	Sechium edule (Chayote v1)
Description	ATP-dependent helicase/deoxyribonuclease subunit B
Genome location	LG04:21054542..21074748
RNA-Seq Expression	Sed0012883
Synteny	Sed0012883
Gene Ontology terms	GO:0006979 - response to oxidative stress (biological process) GO:0009555 - pollen development (biological process) GO:0005886 - plasma membrane (cellular component) GO:0016021 - integral component of membrane (cellular component)
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

XP_004137681.1 uncharacterized protein LOC101203220 [Cucumis sativus]

2.5e-115

92.2

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Query:  MGDPPIRSLLISLLSLIPISLAYRPGDIVPMSKMGQYHSSRTVWHDMIGRHCPIFGVNREVLIPIPKPIGYTGADPYKISFQVGKEKFLVPWLLVINRKS
        M  PPI SLL+SLLSL+PI LAYRPGDIVPMSKMGQYHSSRTVWHDMIGRHCPI+GVNREVL+PIPKP+GYTGADPYKISFQVGKEKFLVPWLLVINRKS
Subjt:  MGDPPIRSLLISLLSLIPISLAYRPGDIVPMSKMGQYHSSRTVWHDMIGRHCPIFGVNREVLIPIPKPIGYTGADPYKISFQVGKEKFLVPWLLVINRKS

Query:  TEVPMIDVNLRYSGSDLHGVTAKVVDMPHIYIDTHPHISKQFWDQQHWPKHILIRYTWEEHSDIDVTSGLYVLFGSGLTLSFILSIYILQSSKDKLARFL
         EVPMIDV+LRYSGSDLHGVTAKVVDMPHIYIDTHPHISKQFWDQQHWPKHIL+RYTWEE S+IDVTSGLYVLFGSGLTLSFILS+YILQSSKDKLARF+
Subjt:  TEVPMIDVNLRYSGSDLHGVTAKVVDMPHIYIDTHPHISKQFWDQQHWPKHILIRYTWEEHSDIDVTSGLYVLFGSGLTLSFILSIYILQSSKDKLARFL

Query:  RETVVESSVPGVGVAKVE
        RETVVESS+PGVGVAKVE
Subjt:  RETVVESSVPGVGVAKVE

XP_008442331.1 PREDICTED: uncharacterized protein LOC103486235 isoform X1 [Cucumis melo]

7.6e-112

86.64

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Query:  MGDPPIRSLLISLLSLIPISLAYRPGDIVPMSKMGQYHSSRTVWHDMIGRHCPIFGVNREVLIPIPKPIGYTGADPYKISFQVGKEKFLVPWLLVINRKS
        M +PPI SLL+SLLSL+PISLAYRPGDIVPMSKMGQYHSSRTVWHDMIGRHCPIFGVNREVL+PIPKP+GYTGADPYKISFQVGKEKFLVPWLLVINRKS
Subjt:  MGDPPIRSLLISLLSLIPISLAYRPGDIVPMSKMGQYHSSRTVWHDMIGRHCPIFGVNREVLIPIPKPIGYTGADPYKISFQVGKEKFLVPWLLVINRKS

Query:  TEVPMIDVNLRYSGSDLHGVTAKVVDMPHIY--------------IDTHPHISKQFWDQQHWPKHILIRYTWEEHSDIDVTSGLYVLFGSGLTLSFILSI
         EVPMIDV+LRYSGSDLHGVTAKVVDMPHI                DTHPHI+KQFWDQQHWPKHIL+RYTWEE S+IDVTSGLYVLFGSGLTLSFILSI
Subjt:  TEVPMIDVNLRYSGSDLHGVTAKVVDMPHIY--------------IDTHPHISKQFWDQQHWPKHILIRYTWEEHSDIDVTSGLYVLFGSGLTLSFILSI

Query:  YILQSSKDKLARFLRETVVESSVPGVGVAKVE
        YILQSSKDKLARF+RETVVESS+PGVGVAKVE
Subjt:  YILQSSKDKLARFLRETVVESSVPGVGVAKVE

XP_008442332.1 PREDICTED: uncharacterized protein LOC103486235 isoform X2 [Cucumis melo]

1.1e-115

92.66

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Query:  MGDPPIRSLLISLLSLIPISLAYRPGDIVPMSKMGQYHSSRTVWHDMIGRHCPIFGVNREVLIPIPKPIGYTGADPYKISFQVGKEKFLVPWLLVINRKS
        M +PPI SLL+SLLSL+PISLAYRPGDIVPMSKMGQYHSSRTVWHDMIGRHCPIFGVNREVL+PIPKP+GYTGADPYKISFQVGKEKFLVPWLLVINRKS
Subjt:  MGDPPIRSLLISLLSLIPISLAYRPGDIVPMSKMGQYHSSRTVWHDMIGRHCPIFGVNREVLIPIPKPIGYTGADPYKISFQVGKEKFLVPWLLVINRKS

Query:  TEVPMIDVNLRYSGSDLHGVTAKVVDMPHIYIDTHPHISKQFWDQQHWPKHILIRYTWEEHSDIDVTSGLYVLFGSGLTLSFILSIYILQSSKDKLARFL
         EVPMIDV+LRYSGSDLHGVTAKVVDMPHIY DTHPHI+KQFWDQQHWPKHIL+RYTWEE S+IDVTSGLYVLFGSGLTLSFILSIYILQSSKDKLARF+
Subjt:  TEVPMIDVNLRYSGSDLHGVTAKVVDMPHIYIDTHPHISKQFWDQQHWPKHILIRYTWEEHSDIDVTSGLYVLFGSGLTLSFILSIYILQSSKDKLARFL

Query:  RETVVESSVPGVGVAKVE
        RETVVESS+PGVGVAKVE
Subjt:  RETVVESSVPGVGVAKVE

XP_022157271.1 uncharacterized protein LOC111024020 isoform X1 [Momordica charantia]

8.1e-114

90.37

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Query:  MGDPPIRSLLISLLSLIPISLAYRPGDIVPMSKMGQYHSSRTVWHDMIGRHCPIFGVNREVLIPIPKPIGYTGADPYKISFQVGKEKFLVPWLLVINRKS
        MG+P I SLL+ LL LIPIS+AYRPGDIVPMSKMGQYHSSRTVWHDMIGRHCPIF VNREVL+PIPKP+GYTGADPYKISFQVGKEKFL+PWLLVINRKS
Subjt:  MGDPPIRSLLISLLSLIPISLAYRPGDIVPMSKMGQYHSSRTVWHDMIGRHCPIFGVNREVLIPIPKPIGYTGADPYKISFQVGKEKFLVPWLLVINRKS

Query:  TEVPMIDVNLRYSGSDLHGVTAKVVDMPHIYIDTHPHISKQFWDQQHWPKHILIRYTWEEHSDIDVTSGLYVLFGSGLTLSFILSIYILQSSKDKLARFL
        TEVPMIDV+LRYSGSDLHGVTAKV DMPHIYIDTHPHISKQFWDQQHWPKH+L+RYTWEE S+IDVTSGLYVLFGSGLTL+FILSIYILQSSKDKLARF+
Subjt:  TEVPMIDVNLRYSGSDLHGVTAKVVDMPHIYIDTHPHISKQFWDQQHWPKHILIRYTWEEHSDIDVTSGLYVLFGSGLTLSFILSIYILQSSKDKLARFL

Query:  RETVVESSVPGVGVAKVE
        RETVVE+S+PGVGVAKVE
Subjt:  RETVVESSVPGVGVAKVE

XP_038903796.1 uncharacterized protein LOC120090293 isoform X1 [Benincasa hispida]

1.3e-114

91.28

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Query:  MGDPPIRSLLISLLSLIPISLAYRPGDIVPMSKMGQYHSSRTVWHDMIGRHCPIFGVNREVLIPIPKPIGYTGADPYKISFQVGKEKFLVPWLLVINRKS
        MG+PPI SLL+SLLSL+PISLAYRPGDIVPMSKMGQYHSSRTVWHDMIGRHCPIFGVNREVL+PIPKP+GYTGADPYKISFQVGKEKFLVPWLLVINR+S
Subjt:  MGDPPIRSLLISLLSLIPISLAYRPGDIVPMSKMGQYHSSRTVWHDMIGRHCPIFGVNREVLIPIPKPIGYTGADPYKISFQVGKEKFLVPWLLVINRKS

Query:  TEVPMIDVNLRYSGSDLHGVTAKVVDMPHIYIDTHPHISKQFWDQQHWPKHILIRYTWEEHSDIDVTSGLYVLFGSGLTLSFILSIYILQSSKDKLARFL
         EVPMIDV+LRYSGSDLHGVTAKVVDMPHIY DTHPHISK+FWDQQHWPKHIL+RYTWEE S+IDV SGLYVLFGSGLTLSFILSI+ILQSSKDKLARF+
Subjt:  TEVPMIDVNLRYSGSDLHGVTAKVVDMPHIYIDTHPHISKQFWDQQHWPKHILIRYTWEEHSDIDVTSGLYVLFGSGLTLSFILSIYILQSSKDKLARFL

Query:  RETVVESSVPGVGVAKVE
        RETVVESS+P VGVAKVE
Subjt:  RETVVESSVPGVGVAKVE

TrEMBL top hits

e value

%identity

Alignment

A0A0A0L9R0 Uncharacterized protein

1.2e-115

92.2

Show/hide

Query:  MGDPPIRSLLISLLSLIPISLAYRPGDIVPMSKMGQYHSSRTVWHDMIGRHCPIFGVNREVLIPIPKPIGYTGADPYKISFQVGKEKFLVPWLLVINRKS
        M  PPI SLL+SLLSL+PI LAYRPGDIVPMSKMGQYHSSRTVWHDMIGRHCPI+GVNREVL+PIPKP+GYTGADPYKISFQVGKEKFLVPWLLVINRKS
Subjt:  MGDPPIRSLLISLLSLIPISLAYRPGDIVPMSKMGQYHSSRTVWHDMIGRHCPIFGVNREVLIPIPKPIGYTGADPYKISFQVGKEKFLVPWLLVINRKS

Query:  TEVPMIDVNLRYSGSDLHGVTAKVVDMPHIYIDTHPHISKQFWDQQHWPKHILIRYTWEEHSDIDVTSGLYVLFGSGLTLSFILSIYILQSSKDKLARFL
         EVPMIDV+LRYSGSDLHGVTAKVVDMPHIYIDTHPHISKQFWDQQHWPKHIL+RYTWEE S+IDVTSGLYVLFGSGLTLSFILS+YILQSSKDKLARF+
Subjt:  TEVPMIDVNLRYSGSDLHGVTAKVVDMPHIYIDTHPHISKQFWDQQHWPKHILIRYTWEEHSDIDVTSGLYVLFGSGLTLSFILSIYILQSSKDKLARFL

Query:  RETVVESSVPGVGVAKVE
        RETVVESS+PGVGVAKVE
Subjt:  RETVVESSVPGVGVAKVE

A0A1S3B5G0 uncharacterized protein LOC103486235 isoform X1

3.7e-112

86.64

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Query:  MGDPPIRSLLISLLSLIPISLAYRPGDIVPMSKMGQYHSSRTVWHDMIGRHCPIFGVNREVLIPIPKPIGYTGADPYKISFQVGKEKFLVPWLLVINRKS
        M +PPI SLL+SLLSL+PISLAYRPGDIVPMSKMGQYHSSRTVWHDMIGRHCPIFGVNREVL+PIPKP+GYTGADPYKISFQVGKEKFLVPWLLVINRKS
Subjt:  MGDPPIRSLLISLLSLIPISLAYRPGDIVPMSKMGQYHSSRTVWHDMIGRHCPIFGVNREVLIPIPKPIGYTGADPYKISFQVGKEKFLVPWLLVINRKS

Query:  TEVPMIDVNLRYSGSDLHGVTAKVVDMPHIY--------------IDTHPHISKQFWDQQHWPKHILIRYTWEEHSDIDVTSGLYVLFGSGLTLSFILSI
         EVPMIDV+LRYSGSDLHGVTAKVVDMPHI                DTHPHI+KQFWDQQHWPKHIL+RYTWEE S+IDVTSGLYVLFGSGLTLSFILSI
Subjt:  TEVPMIDVNLRYSGSDLHGVTAKVVDMPHIY--------------IDTHPHISKQFWDQQHWPKHILIRYTWEEHSDIDVTSGLYVLFGSGLTLSFILSI

Query:  YILQSSKDKLARFLRETVVESSVPGVGVAKVE
        YILQSSKDKLARF+RETVVESS+PGVGVAKVE
Subjt:  YILQSSKDKLARFLRETVVESSVPGVGVAKVE

A0A1S3B641 uncharacterized protein LOC103486235 isoform X2

5.5e-116

92.66

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Query:  MGDPPIRSLLISLLSLIPISLAYRPGDIVPMSKMGQYHSSRTVWHDMIGRHCPIFGVNREVLIPIPKPIGYTGADPYKISFQVGKEKFLVPWLLVINRKS
        M +PPI SLL+SLLSL+PISLAYRPGDIVPMSKMGQYHSSRTVWHDMIGRHCPIFGVNREVL+PIPKP+GYTGADPYKISFQVGKEKFLVPWLLVINRKS
Subjt:  MGDPPIRSLLISLLSLIPISLAYRPGDIVPMSKMGQYHSSRTVWHDMIGRHCPIFGVNREVLIPIPKPIGYTGADPYKISFQVGKEKFLVPWLLVINRKS

Query:  TEVPMIDVNLRYSGSDLHGVTAKVVDMPHIYIDTHPHISKQFWDQQHWPKHILIRYTWEEHSDIDVTSGLYVLFGSGLTLSFILSIYILQSSKDKLARFL
         EVPMIDV+LRYSGSDLHGVTAKVVDMPHIY DTHPHI+KQFWDQQHWPKHIL+RYTWEE S+IDVTSGLYVLFGSGLTLSFILSIYILQSSKDKLARF+
Subjt:  TEVPMIDVNLRYSGSDLHGVTAKVVDMPHIYIDTHPHISKQFWDQQHWPKHILIRYTWEEHSDIDVTSGLYVLFGSGLTLSFILSIYILQSSKDKLARFL

Query:  RETVVESSVPGVGVAKVE
        RETVVESS+PGVGVAKVE
Subjt:  RETVVESSVPGVGVAKVE

A0A5A7TLX6 Uncharacterized protein

5.5e-116

92.66

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Query:  MGDPPIRSLLISLLSLIPISLAYRPGDIVPMSKMGQYHSSRTVWHDMIGRHCPIFGVNREVLIPIPKPIGYTGADPYKISFQVGKEKFLVPWLLVINRKS
        M +PPI SLL+SLLSL+PISLAYRPGDIVPMSKMGQYHSSRTVWHDMIGRHCPIFGVNREVL+PIPKP+GYTGADPYKISFQVGKEKFLVPWLLVINRKS
Subjt:  MGDPPIRSLLISLLSLIPISLAYRPGDIVPMSKMGQYHSSRTVWHDMIGRHCPIFGVNREVLIPIPKPIGYTGADPYKISFQVGKEKFLVPWLLVINRKS

Query:  TEVPMIDVNLRYSGSDLHGVTAKVVDMPHIYIDTHPHISKQFWDQQHWPKHILIRYTWEEHSDIDVTSGLYVLFGSGLTLSFILSIYILQSSKDKLARFL
         EVPMIDV+LRYSGSDLHGVTAKVVDMPHIY DTHPHI+KQFWDQQHWPKHIL+RYTWEE S+IDVTSGLYVLFGSGLTLSFILSIYILQSSKDKLARF+
Subjt:  TEVPMIDVNLRYSGSDLHGVTAKVVDMPHIYIDTHPHISKQFWDQQHWPKHILIRYTWEEHSDIDVTSGLYVLFGSGLTLSFILSIYILQSSKDKLARFL

Query:  RETVVESSVPGVGVAKVE
        RETVVESS+PGVGVAKVE
Subjt:  RETVVESSVPGVGVAKVE

A0A6J1DXJ6 uncharacterized protein LOC111024020 isoform X1

3.9e-114

90.37

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Query:  MGDPPIRSLLISLLSLIPISLAYRPGDIVPMSKMGQYHSSRTVWHDMIGRHCPIFGVNREVLIPIPKPIGYTGADPYKISFQVGKEKFLVPWLLVINRKS
        MG+P I SLL+ LL LIPIS+AYRPGDIVPMSKMGQYHSSRTVWHDMIGRHCPIF VNREVL+PIPKP+GYTGADPYKISFQVGKEKFL+PWLLVINRKS
Subjt:  MGDPPIRSLLISLLSLIPISLAYRPGDIVPMSKMGQYHSSRTVWHDMIGRHCPIFGVNREVLIPIPKPIGYTGADPYKISFQVGKEKFLVPWLLVINRKS

Query:  TEVPMIDVNLRYSGSDLHGVTAKVVDMPHIYIDTHPHISKQFWDQQHWPKHILIRYTWEEHSDIDVTSGLYVLFGSGLTLSFILSIYILQSSKDKLARFL
        TEVPMIDV+LRYSGSDLHGVTAKV DMPHIYIDTHPHISKQFWDQQHWPKH+L+RYTWEE S+IDVTSGLYVLFGSGLTL+FILSIYILQSSKDKLARF+
Subjt:  TEVPMIDVNLRYSGSDLHGVTAKVVDMPHIYIDTHPHISKQFWDQQHWPKHILIRYTWEEHSDIDVTSGLYVLFGSGLTLSFILSIYILQSSKDKLARFL

Query:  RETVVESSVPGVGVAKVE
        RETVVE+S+PGVGVAKVE
Subjt:  RETVVESSVPGVGVAKVE

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT3G51610.1 unknown protein

3.8e-93

75.96

Show/hide

Query:  IRSLLISLLSLIPISLAYRPGDIVPMSKMGQYHSSRTVWHDMIGRHCPIFGVNREVLIPIPKPIGYTGADPYKISFQVGKEKFLVPWLLVINRKSTEVPM
        I++L++  LS   +S AYRPGDIV MSKMGQYHSSRT WHD+IG+HCPIF VNREVLIPI KPIGYTG DPYKI FQVG EKFL+ WLLVINRKS+EVPM
Subjt:  IRSLLISLLSLIPISLAYRPGDIVPMSKMGQYHSSRTVWHDMIGRHCPIFGVNREVLIPIPKPIGYTGADPYKISFQVGKEKFLVPWLLVINRKSTEVPM

Query:  IDVNLRYSGSDLHGVTAKVVDMPHIYIDTHPHISKQFWDQQHWPKHILIRYTWEEHSDIDVTSGLYVLFGSGLTLSFILSIYILQSSKDKLARFLRETVV
        IDVNLRYSG DL GVTA+V+DMPH Y++THP I KQFWD QHWPKH+L+RYTW+E S+IDV+SG YVLFGS LT SF+LSIY+LQSS++KLARF+RETVV
Subjt:  IDVNLRYSGSDLHGVTAKVVDMPHIYIDTHPHISKQFWDQQHWPKHILIRYTWEEHSDIDVTSGLYVLFGSGLTLSFILSIYILQSSKDKLARFLRETVV

Query:  ESSVPGVG
        ESS   VG
Subjt:  ESSVPGVG

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGGGAGATCCTCCAATTCGGTCGCTTCTAATTTCGCTATTGTCTCTGATTCCGATTTCGCTTGCTTACAGGCCTGGGGACATCGTTCCGATGAGTAAGATGGGACAGTA
TCACTCGTCGAGAACAGTTTGGCACGATATGATCGGTCGACATTGTCCAATTTTTGGCGTCAATCGCGAGGTTTTGATTCCTATACCGAAGCCGATCGGTTACACTGGAG
CTGATCCGTATAAAATATCCTTTCAAGTTGGAAAAGAAAAGTTTCTTGTCCCATGGCTTCTTGTGATAAATCGCAAAAGTACGGAAGTCCCAATGATTGATGTCAACTTG
AGATACTCTGGAAGTGATCTTCACGGTGTGACAGCCAAAGTAGTCGACATGCCTCATATATACATTGATACGCATCCACATATTAGCAAACAATTCTGGGATCAACAACA
TTGGCCAAAACATATCCTTATCCGTTATACATGGGAGGAGCACTCGGATATTGATGTAACTTCCGGATTATATGTTTTGTTTGGATCAGGTCTCACGCTATCTTTTATTC
TATCAATTTACATATTGCAATCATCGAAGGATAAATTAGCAAGGTTTCTTAGGGAAACAGTAGTTGAAAGCAGCGTTCCTGGTGTAGGAGTGGCTAAAGTTGAATAA

mRNA sequence

Show/hide mRNA sequence

CTAATTCTGGCACCCCCAAGACCGAGTATCAGAACTCCTCGCCAGTTCAGAAGAAGAGTAAAGCGAATCGATAGAACTCCAGTTCTTCAAACTATTGCACAAATCACCGC
CGTGTCGACGATGGGAGATCCTCCAATTCGGTCGCTTCTAATTTCGCTATTGTCTCTGATTCCGATTTCGCTTGCTTACAGGCCTGGGGACATCGTTCCGATGAGTAAGA
TGGGACAGTATCACTCGTCGAGAACAGTTTGGCACGATATGATCGGTCGACATTGTCCAATTTTTGGCGTCAATCGCGAGGTTTTGATTCCTATACCGAAGCCGATCGGT
TACACTGGAGCTGATCCGTATAAAATATCCTTTCAAGTTGGAAAAGAAAAGTTTCTTGTCCCATGGCTTCTTGTGATAAATCGCAAAAGTACGGAAGTCCCAATGATTGA
TGTCAACTTGAGATACTCTGGAAGTGATCTTCACGGTGTGACAGCCAAAGTAGTCGACATGCCTCATATATACATTGATACGCATCCACATATTAGCAAACAATTCTGGG
ATCAACAACATTGGCCAAAACATATCCTTATCCGTTATACATGGGAGGAGCACTCGGATATTGATGTAACTTCCGGATTATATGTTTTGTTTGGATCAGGTCTCACGCTA
TCTTTTATTCTATCAATTTACATATTGCAATCATCGAAGGATAAATTAGCAAGGTTTCTTAGGGAAACAGTAGTTGAAAGCAGCGTTCCTGGTGTAGGAGTGGCTAAAGT
TGAATAAACTCTAGTCATTCCAAATGCTAATCAGCATTCAATTTGAAATGTTACAAAATACAACCACGGTCAGATTGGTTTCACTACGACAACCTGAGCCGTCGGGTAGG
TTAAGAAAGCACATTGCTTTTGGCTAAAGATGTATGCAACTTGGAGGACAATCAGTCAGTCTAGCTCAAAAAAGTCTAATACTGTAGAGACGACCATTATTTTATTTTCT
AGGCCGGGAGTCTTTTTTTGGGGTGTAAATTAGACCAAGACTAGTTGTGTAGAAATTGCTGGACTCTAGTACTTGGACTTTCTGACTTTCTGACCTCCTGTCCCTGTTGT
ATTACTATTTTTCTCTCCATTGCTGGCACTTCCATTTCTCTCAAAAGGTCTTCATTTTATAAAGTTAGCTTG

Protein sequence

Show/hide protein sequence

MGDPPIRSLLISLLSLIPISLAYRPGDIVPMSKMGQYHSSRTVWHDMIGRHCPIFGVNREVLIPIPKPIGYTGADPYKISFQVGKEKFLVPWLLVINRKSTEVPMIDVNL
RYSGSDLHGVTAKVVDMPHIYIDTHPHISKQFWDQQHWPKHILIRYTWEEHSDIDVTSGLYVLFGSGLTLSFILSIYILQSSKDKLARFLRETVVESSVPGVGVAKVE

Sed0012883 (gene) of Chayote v1 genome