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Sed0012906 (gene) of Chayote v1 genome

Gene IDSed0012906
OrganismSechium edule (Chayote v1)
DescriptionDBD_Tnp_Mut domain-containing protein
Genome locationLG11:16670010..16672668
RNA-Seq ExpressionSed0012906
SyntenySed0012906
Gene Ontology termsGO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR007527 - Zinc finger, SWIM-type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0046135.1 uncharacterized protein E6C27_scaffold157G00750 [Cucumis melo var. makuwa]1.1e-1437.99Show/hide
Query:  MDKISIVVFNGGQWNVNGSYEKYKISGVLVDEVMSFEAFV------------------------------PPFEILEDKDVDWFLTLVKNNGTRHPLV--
        M K+ IVVF+ GQW+   SY  YK +GVLVDE+M FE FV                                 +I EDKDV WFL+LVK   TRHPLV  
Subjt:  MDKISIVVFNGGQWNVNGSYEKYKISGVLVDEVMSFEAFV------------------------------PPFEILEDKDVDWFLTLVKNNGTRHPLV--

Query:  --VDVKSFYLEGTS--STVVNNSTLLVSSSTVDDNDGDGVPFHVIKDIR---LDCVFNV--KDTFGSKELLCSCLKYLA
            V +  LE +S   + ++N   L+ SS++DD+      F ++ DI    L   FN+  KD F SKELL     Y+A
Subjt:  --VDVKSFYLEGTS--STVVNNSTLLVSSSTVDDNDGDGVPFHVIKDIR---LDCVFNV--KDTFGSKELLCSCLKYLA

TYK14543.1 uncharacterized protein E5676_scaffold552G00250 [Cucumis melo var. makuwa]7.4e-1642.95Show/hide
Query:  MDKISIVVFNGGQWNVNGSYEKYKISGVLVDEVMSFEAFVPPFEILEDKDVDWFLTLVKNNGTRHPLV----VDVKSFYLEGTS--STVVNNSTLLVSSS
        M K+ IVVF+ GQW+   SY  YK +GVLVDE+M F+        LEDKDV WFL+LVK   TRHPLV      V +  LE +S   + ++N   L+ SS
Subjt:  MDKISIVVFNGGQWNVNGSYEKYKISGVLVDEVMSFEAFVPPFEILEDKDVDWFLTLVKNNGTRHPLV----VDVKSFYLEGTS--STVVNNSTLLVSSS

Query:  TVDDNDGDGVPFHVIKDIR---LDCVFNV--KDTFGSKELLCSCLKYLA
        ++DD+      F ++ DI    L   F++  KD F SKELL     Y+A
Subjt:  TVDDNDGDGVPFHVIKDIR---LDCVFNV--KDTFGSKELLCSCLKYLA

TYK23827.1 MuDR family transposase [Cucumis melo var. makuwa]4.8e-1538.55Show/hide
Query:  MDKISIVVFNGGQWNVNGSYEKYKISGVLVDEVMSFEAF------------------------------VPPFEILEDKDVDWFLTLVKNNGTRHPLV--
        M K+ IVVF+ GQW+   SY  YK +GVLVDE+MSFE F                                  +I EDKDV WFL+LVK   TRHPLV  
Subjt:  MDKISIVVFNGGQWNVNGSYEKYKISGVLVDEVMSFEAF------------------------------VPPFEILEDKDVDWFLTLVKNNGTRHPLV--

Query:  --VDVKSFYLEGTS--STVVNNSTLLVSSSTVDDNDGDGVPFHVIKDIR---LDCVFNV--KDTFGSKELLCSCLKYLA
          V V +  LE +S   + ++N   L+SSS++DD+      F ++ DI    L   F++  KD F SKELL     Y+A
Subjt:  --VDVKSFYLEGTS--STVVNNSTLLVSSSTVDDNDGDGVPFHVIKDIR---LDCVFNV--KDTFGSKELLCSCLKYLA

TYK27852.1 Mutator-like transposase [Cucumis melo var. makuwa]1.8e-1437.99Show/hide
Query:  MDKISIVVFNGGQWNVNGSYEKYKISGVLVDEVMSFEAFVP------------------------------PFEILEDKDVDWFLTLVKNNGTRHPLV--
        M K+ IVVF+ GQW+   SY  YK  GVLVDE+MSFE FV                                 +I EDKDV WFL+LVK + TRHPLV  
Subjt:  MDKISIVVFNGGQWNVNGSYEKYKISGVLVDEVMSFEAFVP------------------------------PFEILEDKDVDWFLTLVKNNGTRHPLV--

Query:  --VDVKSFYLEGTS--STVVNNSTLLVSSSTVDDNDGDGVPFHVIKDIR---LDCVFNV--KDTFGSKELLCSCLKYLA
            V +  LE +S   + ++N   L+ SS++DD+      F ++ DI    L   F++  KD F SKELL     Y+A
Subjt:  --VDVKSFYLEGTS--STVVNNSTLLVSSSTVDDNDGDGVPFHVIKDIR---LDCVFNV--KDTFGSKELLCSCLKYLA

XP_038907134.1 uncharacterized protein LOC120092945 [Benincasa hispida]3.0e-1740.59Show/hide
Query:  ISIVVFNGGQWNVNGSYEKYKISGVLVDEVMSFEAFVPPF------------------------------EILEDKDVDWFLTLVKNNGTRHPLVVDVKS
        I IVVF+GG WN    Y  YK +GVLVD++M FE FV                                 EI EDKDV WFLTLVK   TRHPLV  V S
Subjt:  ISIVVFNGGQWNVNGSYEKYKISGVLVDEVMSFEAFVPPF------------------------------EILEDKDVDWFLTLVKNNGTRHPLVVDVKS

Query:  FYLEGTSSTVVNN-----STLLVSSSTVDDNDGDGVPFHVIKDIRLDCVFNVKDTFGSKELLCSCLKYLA
          LEG+SS V +      S +  S   +DD+      F VI DI +      KD F SKE+L  C  Y+A
Subjt:  FYLEGTSSTVVNN-----STLLVSSSTVDDNDGDGVPFHVIKDIRLDCVFNVKDTFGSKELLCSCLKYLA

TrEMBL top hitse value%identityAlignment
A0A5A7T3G5 Protein FAR1-RELATED SEQUENCE 4-like8.9e-1537.99Show/hide
Query:  MDKISIVVFNGGQWNVNGSYEKYKISGVLVDEVMSFEAFV------------------------------PPFEILEDKDVDWFLTLVKNNGTRHPLV--
        M K+ IVVF+ GQW+   SY  YK +GVLVDE+MSFE FV                                 +I EDKDV WFL+LVK   TRHPLV  
Subjt:  MDKISIVVFNGGQWNVNGSYEKYKISGVLVDEVMSFEAFV------------------------------PPFEILEDKDVDWFLTLVKNNGTRHPLV--

Query:  --VDVKSFYLEGTS--STVVNNSTLLVSSSTVDDNDGDGVPFHVIKDIR---LDCVFNV--KDTFGSKELLCSCLKYLA
            V    LE +S   + ++N   L+ SS++DD+      F ++ DI    L   F++  KD F SKELL     Y+A
Subjt:  --VDVKSFYLEGTS--STVVNNSTLLVSSSTVDDNDGDGVPFHVIKDIR---LDCVFNV--KDTFGSKELLCSCLKYLA

A0A5A7TXI0 DBD_Tnp_Mut domain-containing protein5.2e-1537.99Show/hide
Query:  MDKISIVVFNGGQWNVNGSYEKYKISGVLVDEVMSFEAFV------------------------------PPFEILEDKDVDWFLTLVKNNGTRHPLV--
        M K+ IVVF+ GQW+   SY  YK +GVLVDE+M FE FV                                 +I EDKDV WFL+LVK   TRHPLV  
Subjt:  MDKISIVVFNGGQWNVNGSYEKYKISGVLVDEVMSFEAFV------------------------------PPFEILEDKDVDWFLTLVKNNGTRHPLV--

Query:  --VDVKSFYLEGTS--STVVNNSTLLVSSSTVDDNDGDGVPFHVIKDIR---LDCVFNV--KDTFGSKELLCSCLKYLA
            V +  LE +S   + ++N   L+ SS++DD+      F ++ DI    L   FN+  KD F SKELL     Y+A
Subjt:  --VDVKSFYLEGTS--STVVNNSTLLVSSSTVDDNDGDGVPFHVIKDIR---LDCVFNV--KDTFGSKELLCSCLKYLA

A0A5D3CRP1 SWIM-type domain-containing protein3.6e-1642.95Show/hide
Query:  MDKISIVVFNGGQWNVNGSYEKYKISGVLVDEVMSFEAFVPPFEILEDKDVDWFLTLVKNNGTRHPLV----VDVKSFYLEGTS--STVVNNSTLLVSSS
        M K+ IVVF+ GQW+   SY  YK +GVLVDE+M F+        LEDKDV WFL+LVK   TRHPLV      V +  LE +S   + ++N   L+ SS
Subjt:  MDKISIVVFNGGQWNVNGSYEKYKISGVLVDEVMSFEAFVPPFEILEDKDVDWFLTLVKNNGTRHPLV----VDVKSFYLEGTS--STVVNNSTLLVSSS

Query:  TVDDNDGDGVPFHVIKDIR---LDCVFNV--KDTFGSKELLCSCLKYLA
        ++DD+      F ++ DI    L   F++  KD F SKELL     Y+A
Subjt:  TVDDNDGDGVPFHVIKDIR---LDCVFNV--KDTFGSKELLCSCLKYLA

A0A5D3DAW8 Protein FAR1-RELATED SEQUENCE 4-like8.9e-1537.99Show/hide
Query:  MDKISIVVFNGGQWNVNGSYEKYKISGVLVDEVMSFEAFV------------------------------PPFEILEDKDVDWFLTLVKNNGTRHPLV--
        M K+ IVVF+ GQW+   SY  YK +GVLVDE+MSFE FV                                 +I EDKDV WFL+LVK   TRHPLV  
Subjt:  MDKISIVVFNGGQWNVNGSYEKYKISGVLVDEVMSFEAFV------------------------------PPFEILEDKDVDWFLTLVKNNGTRHPLV--

Query:  --VDVKSFYLEGTS--STVVNNSTLLVSSSTVDDNDGDGVPFHVIKDIR---LDCVFNV--KDTFGSKELLCSCLKYLA
            V    LE +S   + ++N   L+ SS++DD+      F ++ DI    L   F++  KD F SKELL     Y+A
Subjt:  --VDVKSFYLEGTS--STVVNNSTLLVSSSTVDDNDGDGVPFHVIKDIR---LDCVFNV--KDTFGSKELLCSCLKYLA

A0A5D3DJR8 MuDR family transposase2.3e-1538.55Show/hide
Query:  MDKISIVVFNGGQWNVNGSYEKYKISGVLVDEVMSFEAF------------------------------VPPFEILEDKDVDWFLTLVKNNGTRHPLV--
        M K+ IVVF+ GQW+   SY  YK +GVLVDE+MSFE F                                  +I EDKDV WFL+LVK   TRHPLV  
Subjt:  MDKISIVVFNGGQWNVNGSYEKYKISGVLVDEVMSFEAF------------------------------VPPFEILEDKDVDWFLTLVKNNGTRHPLV--

Query:  --VDVKSFYLEGTS--STVVNNSTLLVSSSTVDDNDGDGVPFHVIKDIR---LDCVFNV--KDTFGSKELLCSCLKYLA
          V V +  LE +S   + ++N   L+SSS++DD+      F ++ DI    L   F++  KD F SKELL     Y+A
Subjt:  --VDVKSFYLEGTS--STVVNNSTLLVSSSTVDDNDGDGVPFHVIKDIR---LDCVFNV--KDTFGSKELLCSCLKYLA

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATAAGATTTCTATTGTTGTCTTCAATGGTGGGCAATGGAATGTTAATGGTTCTTATGAGAAGTATAAGATTAGTGGAGTTTTGGTGGATGAAGTAATGAGTTTTGA
AGCTTTTGTACCCCCTTTTGAAATTCTGGAAGATAAAGACGTAGACTGGTTCTTAACATTAGTTAAGAATAATGGTACAAGACATCCATTAGTGGTTGATGTTAAGAGCT
TTTATTTAGAGGGGACATCTAGTACTGTTGTTAACAATTCAACATTGTTGGTGTCTTCCTCAACTGTAGATGATAACGATGGTGATGGTGTCCCTTTTCATGTCATTAAA
GATATTCGGTTGGATTGTGTCTTTAATGTAAAAGATACATTTGGTAGCAAAGAATTATTGTGTAGTTGTCTTAAATACTTGGCTGATCTTGATGAAATTCCATGCTCTCA
TGCACTTGCTGCTATACGTGCACTAGATTTTTGTGTCTAA
mRNA sequenceShow/hide mRNA sequence
ATGGATAAGATTTCTATTGTTGTCTTCAATGGTGGGCAATGGAATGTTAATGGTTCTTATGAGAAGTATAAGATTAGTGGAGTTTTGGTGGATGAAGTAATGAGTTTTGA
AGCTTTTGTACCCCCTTTTGAAATTCTGGAAGATAAAGACGTAGACTGGTTCTTAACATTAGTTAAGAATAATGGTACAAGACATCCATTAGTGGTTGATGTTAAGAGCT
TTTATTTAGAGGGGACATCTAGTACTGTTGTTAACAATTCAACATTGTTGGTGTCTTCCTCAACTGTAGATGATAACGATGGTGATGGTGTCCCTTTTCATGTCATTAAA
GATATTCGGTTGGATTGTGTCTTTAATGTAAAAGATACATTTGGTAGCAAAGAATTATTGTGTAGTTGTCTTAAATACTTGGCTGATCTTGATGAAATTCCATGCTCTCA
TGCACTTGCTGCTATACGTGCACTAGATTTTTGTGTCTAA
Protein sequenceShow/hide protein sequence
MDKISIVVFNGGQWNVNGSYEKYKISGVLVDEVMSFEAFVPPFEILEDKDVDWFLTLVKNNGTRHPLVVDVKSFYLEGTSSTVVNNSTLLVSSSTVDDNDGDGVPFHVIK
DIRLDCVFNVKDTFGSKELLCSCLKYLADLDEIPCSHALAAIRALDFCV