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Sed0012910 (gene) of Chayote v1 genome

Gene IDSed0012910
OrganismSechium edule (Chayote v1)
Descriptionroot phototropism protein 3-like
Genome locationLG13:2437533..2438374
RNA-Seq ExpressionSed0012910
SyntenySed0012910
Gene Ontology termsGO:0016567 - protein ubiquitination (biological process)
InterPro domainsIPR027356 - NPH3 domain
IPR029959 - Root phototropism protein 3-like
IPR043454 - NPH3/RPT2-like family


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004137156.1 root phototropism protein 3 isoform X1 [Cucumis sativus]4.8e-4061.71Show/hide
Query:  MSVARLVDSYLTEVAKERNLSLTKFQ--------------------------ACPTPAEHERKRLWRVMDSQKISNGA-----------------FLFSE
        M VARLVDSYLTEVA++RNLSLTKFQ                          A PT  EHERKRL RVMD QK+S  A                  LFSE
Subjt:  MSVARLVDSYLTEVAKERNLSLTKFQ--------------------------ACPTPAEHERKRLWRVMDSQKISNGA-----------------FLFSE

Query:  QVKISNTIANSSLKEANYSQLQPLARNQKTLLEATPQSLQEGWASAKKDINTLKFEHESVKTKYLELQSEMENLQ
        QVKISN IANSSLKEAN SQ QPL  N+KTLLEATPQS QEGWA+AKKDINTLKFE ES+KTKYLELQ+EME+LQ
Subjt:  QVKISNTIANSSLKEANYSQLQPLARNQKTLLEATPQSLQEGWASAKKDINTLKFEHESVKTKYLELQSEMENLQ

XP_016902943.1 PREDICTED: root phototropism protein 3 [Cucumis melo]4.8e-4061.71Show/hide
Query:  MSVARLVDSYLTEVAKERNLSLTKFQ--------------------------ACPTPAEHERKRLWRVMDSQKISNGA-----------------FLFSE
        M VARLVDSYLTEVA++RNLSLTKFQ                          A PT  EHERKRL RVMD QK+S  A                  LFSE
Subjt:  MSVARLVDSYLTEVAKERNLSLTKFQ--------------------------ACPTPAEHERKRLWRVMDSQKISNGA-----------------FLFSE

Query:  QVKISNTIANSSLKEANYSQLQPLARNQKTLLEATPQSLQEGWASAKKDINTLKFEHESVKTKYLELQSEMENLQ
        QVKISN IANSSLKEAN SQ QPL  N+KTLLEATPQS QEGWA+AKKDINTLKFE ES+KTKYLELQ+EME+LQ
Subjt:  QVKISNTIANSSLKEANYSQLQPLARNQKTLLEATPQSLQEGWASAKKDINTLKFEHESVKTKYLELQSEMENLQ

XP_022149130.1 root phototropism protein 3-like [Momordica charantia]2.1e-4062.29Show/hide
Query:  MSVARLVDSYLTEVAKERNLSLTKFQ--------------------------ACPTPAEHERKRLWRVMDSQKISNGA-----------------FLFSE
        M VARLVDSYLTEVA++RNLSLTKFQ                          A PT  EHERKRL RVMD QK+S  A                  LFSE
Subjt:  MSVARLVDSYLTEVAKERNLSLTKFQ--------------------------ACPTPAEHERKRLWRVMDSQKISNGA-----------------FLFSE

Query:  QVKISNTIANSSLKEANYSQLQPLARNQKTLLEATPQSLQEGWASAKKDINTLKFEHESVKTKYLELQSEMENLQ
        QVKISNTIANSSLKEA+ SQ QPL  N+KTLLEATPQS QEGWA+AKKDINTLKFE ESVKTKYLELQ+EME+LQ
Subjt:  QVKISNTIANSSLKEANYSQLQPLARNQKTLLEATPQSLQEGWASAKKDINTLKFEHESVKTKYLELQSEMENLQ

XP_031740285.1 root phototropism protein 3 isoform X2 [Cucumis sativus]4.8e-4061.71Show/hide
Query:  MSVARLVDSYLTEVAKERNLSLTKFQ--------------------------ACPTPAEHERKRLWRVMDSQKISNGA-----------------FLFSE
        M VARLVDSYLTEVA++RNLSLTKFQ                          A PT  EHERKRL RVMD QK+S  A                  LFSE
Subjt:  MSVARLVDSYLTEVAKERNLSLTKFQ--------------------------ACPTPAEHERKRLWRVMDSQKISNGA-----------------FLFSE

Query:  QVKISNTIANSSLKEANYSQLQPLARNQKTLLEATPQSLQEGWASAKKDINTLKFEHESVKTKYLELQSEMENLQ
        QVKISN IANSSLKEAN SQ QPL  N+KTLLEATPQS QEGWA+AKKDINTLKFE ES+KTKYLELQ+EME+LQ
Subjt:  QVKISNTIANSSLKEANYSQLQPLARNQKTLLEATPQSLQEGWASAKKDINTLKFEHESVKTKYLELQSEMENLQ

XP_038905136.1 root phototropism protein 3-like isoform X1 [Benincasa hispida]8.1e-4061.71Show/hide
Query:  MSVARLVDSYLTEVAKERNLSLTKFQ--------------------------ACPTPAEHERKRLWRVMDSQKISNGA-----------------FLFSE
        M VARLVDSYLTEVA++RNLSLTKFQ                          A PT  EHERKRL RVMD QK+S  A                  LFSE
Subjt:  MSVARLVDSYLTEVAKERNLSLTKFQ--------------------------ACPTPAEHERKRLWRVMDSQKISNGA-----------------FLFSE

Query:  QVKISNTIANSSLKEANYSQLQPLARNQKTLLEATPQSLQEGWASAKKDINTLKFEHESVKTKYLELQSEMENLQ
        QVKISN IANSSLKEA+ SQ QPL  N+KTLLEATPQS QEGWA+AKKDINTLKFE ESVKTKYLELQ+EME+LQ
Subjt:  QVKISNTIANSSLKEANYSQLQPLARNQKTLLEATPQSLQEGWASAKKDINTLKFEHESVKTKYLELQSEMENLQ

TrEMBL top hitse value%identityAlignment
A0A0A0KZC3 Uncharacterized protein2.3e-4061.71Show/hide
Query:  MSVARLVDSYLTEVAKERNLSLTKFQ--------------------------ACPTPAEHERKRLWRVMDSQKISNGA-----------------FLFSE
        M VARLVDSYLTEVA++RNLSLTKFQ                          A PT  EHERKRL RVMD QK+S  A                  LFSE
Subjt:  MSVARLVDSYLTEVAKERNLSLTKFQ--------------------------ACPTPAEHERKRLWRVMDSQKISNGA-----------------FLFSE

Query:  QVKISNTIANSSLKEANYSQLQPLARNQKTLLEATPQSLQEGWASAKKDINTLKFEHESVKTKYLELQSEMENLQ
        QVKISN IANSSLKEAN SQ QPL  N+KTLLEATPQS QEGWA+AKKDINTLKFE ES+KTKYLELQ+EME+LQ
Subjt:  QVKISNTIANSSLKEANYSQLQPLARNQKTLLEATPQSLQEGWASAKKDINTLKFEHESVKTKYLELQSEMENLQ

A0A1S4E3Y8 root phototropism protein 32.3e-4061.71Show/hide
Query:  MSVARLVDSYLTEVAKERNLSLTKFQ--------------------------ACPTPAEHERKRLWRVMDSQKISNGA-----------------FLFSE
        M VARLVDSYLTEVA++RNLSLTKFQ                          A PT  EHERKRL RVMD QK+S  A                  LFSE
Subjt:  MSVARLVDSYLTEVAKERNLSLTKFQ--------------------------ACPTPAEHERKRLWRVMDSQKISNGA-----------------FLFSE

Query:  QVKISNTIANSSLKEANYSQLQPLARNQKTLLEATPQSLQEGWASAKKDINTLKFEHESVKTKYLELQSEMENLQ
        QVKISN IANSSLKEAN SQ QPL  N+KTLLEATPQS QEGWA+AKKDINTLKFE ES+KTKYLELQ+EME+LQ
Subjt:  QVKISNTIANSSLKEANYSQLQPLARNQKTLLEATPQSLQEGWASAKKDINTLKFEHESVKTKYLELQSEMENLQ

A0A5B7B3H8 Putative root phototropism protein 35.7e-3959.43Show/hide
Query:  MSVARLVDSYLTEVAKERNLSLTKFQ--------------------------ACPTPAEHERKRLWRVMDSQKISNGA-----------------FLFSE
        M VARLVDSYLTEV+++RNLSLTKFQ                          A PT +EHERKRL RVMD QK+S  A                  LFSE
Subjt:  MSVARLVDSYLTEVAKERNLSLTKFQ--------------------------ACPTPAEHERKRLWRVMDSQKISNGA-----------------FLFSE

Query:  QVKISNTIANSSLKEANYSQLQPLARNQKTLLEATPQSLQEGWASAKKDINTLKFEHESVKTKYLELQSEMENLQ
        QVKISN IAN+SLKEA  SQ QP+  N+KTLLE TPQS QEGWA+AKKDINTLKFE ESVKTKYLELQ++MENLQ
Subjt:  QVKISNTIANSSLKEANYSQLQPLARNQKTLLEATPQSLQEGWASAKKDINTLKFEHESVKTKYLELQSEMENLQ

A0A5D3CB29 Root phototropism protein 32.3e-4061.71Show/hide
Query:  MSVARLVDSYLTEVAKERNLSLTKFQ--------------------------ACPTPAEHERKRLWRVMDSQKISNGA-----------------FLFSE
        M VARLVDSYLTEVA++RNLSLTKFQ                          A PT  EHERKRL RVMD QK+S  A                  LFSE
Subjt:  MSVARLVDSYLTEVAKERNLSLTKFQ--------------------------ACPTPAEHERKRLWRVMDSQKISNGA-----------------FLFSE

Query:  QVKISNTIANSSLKEANYSQLQPLARNQKTLLEATPQSLQEGWASAKKDINTLKFEHESVKTKYLELQSEMENLQ
        QVKISN IANSSLKEAN SQ QPL  N+KTLLEATPQS QEGWA+AKKDINTLKFE ES+KTKYLELQ+EME+LQ
Subjt:  QVKISNTIANSSLKEANYSQLQPLARNQKTLLEATPQSLQEGWASAKKDINTLKFEHESVKTKYLELQSEMENLQ

A0A6J1D4V9 root phototropism protein 3-like1.0e-4062.29Show/hide
Query:  MSVARLVDSYLTEVAKERNLSLTKFQ--------------------------ACPTPAEHERKRLWRVMDSQKISNGA-----------------FLFSE
        M VARLVDSYLTEVA++RNLSLTKFQ                          A PT  EHERKRL RVMD QK+S  A                  LFSE
Subjt:  MSVARLVDSYLTEVAKERNLSLTKFQ--------------------------ACPTPAEHERKRLWRVMDSQKISNGA-----------------FLFSE

Query:  QVKISNTIANSSLKEANYSQLQPLARNQKTLLEATPQSLQEGWASAKKDINTLKFEHESVKTKYLELQSEMENLQ
        QVKISNTIANSSLKEA+ SQ QPL  N+KTLLEATPQS QEGWA+AKKDINTLKFE ESVKTKYLELQ+EME+LQ
Subjt:  QVKISNTIANSSLKEANYSQLQPLARNQKTLLEATPQSLQEGWASAKKDINTLKFEHESVKTKYLELQSEMENLQ

SwissProt top hitse value%identityAlignment
Q5KS50 Coleoptile phototropism protein 18.8e-2949.17Show/hide
Query:  VARLVDSYLTEVAKERNLSLTKFQ-----------AC---------------PTPAEHERKRLWRVMDSQKISNGA-----------------FLFSEQV
        VARL+DSYL+EV+++RNLSLTKFQ           AC               PT  EHERKRL RVMD QK+S  A                  LF+EQV
Subjt:  VARLVDSYLTEVAKERNLSLTKFQ-----------AC---------------PTPAEHERKRLWRVMDSQKISNGA-----------------FLFSEQV

Query:  KISNTIA--------NSSLKEANYSQLQPLARNQKTLLEATPQSLQEGWASAKKDINTLKFEHESVKTKYLELQSEMENLQ
        KISN +A        +SS   A+ +   P  R Q  LL+ TPQS QEGWA+AKKDINTLKFE ES+K KYLELQ EM+ LQ
Subjt:  KISNTIA--------NSSLKEANYSQLQPLARNQKTLLEATPQSLQEGWASAKKDINTLKFEHESVKTKYLELQSEMENLQ

Q9FMF5 Root phototropism protein 32.5e-3653.89Show/hide
Query:  MSVARLVDSYLTEVAKERNLSLTKFQ--------------------------ACPTPAEHERKRLWRVMDSQKISNGA-----------------FLFSE
        M VARLVDSYLTEVA++RNL LTKFQ                          A PT +EHERKRL RVMD QK+S  A                  LFSE
Subjt:  MSVARLVDSYLTEVAKERNLSLTKFQ--------------------------ACPTPAEHERKRLWRVMDSQKISNGA-----------------FLFSE

Query:  QVKISNTIANSSLKEAN-----YSQLQPLARNQKTLLEATPQSLQEGWASAKKDINTLKFEHESVKTKYLELQSEMENLQ
        QVKISN +AN+SLKE+          QP+  N+KTL+EATPQS QEGWA+AKKDINTLKFE E+VKTKY+ELQ+EME +Q
Subjt:  QVKISNTIANSSLKEAN-----YSQLQPLARNQKTLLEATPQSLQEGWASAKKDINTLKFEHESVKTKYLELQSEMENLQ

Q9LFU0 BTB/POZ domain-containing protein DOT31.2e-0425.9Show/hide
Query:  SVARLVDSYLTEVAKERNLSLTKFQAC--------------------------PTPAEHERKRLWRVMDSQKISNGAFLFSEQVKISNTIANSSLKEANY
        S+++L+D+YL E+AK+  L +TKFQ                            P+ ++H+R+RL + M+ +K+S  A L + Q   ++ +   ++ + N 
Subjt:  SVARLVDSYLTEVAKERNLSLTKFQAC--------------------------PTPAEHERKRLWRVMDSQKISNGAFLFSEQVKISNTIANSSLKEANY

Query:  SQLQPLARNQKTLLEATPQSLQEGWASAKKD---------INTLKFEHESVKTKYLELQSEMENLQ
          L       + +++      +E  +  ++D         I TLK E E+VK K  ELQS+   LQ
Subjt:  SQLQPLARNQKTLLEATPQSLQEGWASAKKD---------INTLKFEHESVKTKYLELQSEMENLQ

Arabidopsis top hitse value%identityAlignment
AT1G30440.1 Phototropic-responsive NPH3 family protein1.5e-0426.86Show/hide
Query:  SVARLVDSYLTEVAKERNLSLTKFQAC--------------------------PTPAEHERKRLWRVMDSQKISNGA-----------------FLFSEQ
        +VA+L+D YL EVA + NL L KFQA                           P  AE ER+ L R++D QK+S  A                  LF EQ
Subjt:  SVARLVDSYLTEVAKERNLSLTKFQAC--------------------------PTPAEHERKRLWRVMDSQKISNGA-----------------FLFSEQ

Query:  VKISNTIANSSLKEANYSQLQPLARNQKTLLEATP-QSLQEGWASAKKDINTLKFEHESVKTKYLELQSEMENLQ
        +++  ++A   L   N        R+   +           GWA+A ++   LK   +S++ +  EL+ E  N++
Subjt:  VKISNTIANSSLKEANYSQLQPLARNQKTLLEATP-QSLQEGWASAKKDINTLKFEHESVKTKYLELQSEMENLQ

AT5G10250.1 Phototropic-responsive NPH3 family protein8.2e-0625.9Show/hide
Query:  SVARLVDSYLTEVAKERNLSLTKFQAC--------------------------PTPAEHERKRLWRVMDSQKISNGAFLFSEQVKISNTIANSSLKEANY
        S+++L+D+YL E+AK+  L +TKFQ                            P+ ++H+R+RL + M+ +K+S  A L + Q   ++ +   ++ + N 
Subjt:  SVARLVDSYLTEVAKERNLSLTKFQAC--------------------------PTPAEHERKRLWRVMDSQKISNGAFLFSEQVKISNTIANSSLKEANY

Query:  SQLQPLARNQKTLLEATPQSLQEGWASAKKD---------INTLKFEHESVKTKYLELQSEMENLQ
          L       + +++      +E  +  ++D         I TLK E E+VK K  ELQS+   LQ
Subjt:  SQLQPLARNQKTLLEATPQSLQEGWASAKKD---------INTLKFEHESVKTKYLELQSEMENLQ

AT5G64330.1 Phototropic-responsive NPH3 family protein1.8e-3753.89Show/hide
Query:  MSVARLVDSYLTEVAKERNLSLTKFQ--------------------------ACPTPAEHERKRLWRVMDSQKISNGA-----------------FLFSE
        M VARLVDSYLTEVA++RNL LTKFQ                          A PT +EHERKRL RVMD QK+S  A                  LFSE
Subjt:  MSVARLVDSYLTEVAKERNLSLTKFQ--------------------------ACPTPAEHERKRLWRVMDSQKISNGA-----------------FLFSE

Query:  QVKISNTIANSSLKEAN-----YSQLQPLARNQKTLLEATPQSLQEGWASAKKDINTLKFEHESVKTKYLELQSEMENLQ
        QVKISN +AN+SLKE+          QP+  N+KTL+EATPQS QEGWA+AKKDINTLKFE E+VKTKY+ELQ+EME +Q
Subjt:  QVKISNTIANSSLKEAN-----YSQLQPLARNQKTLLEATPQSLQEGWASAKKDINTLKFEHESVKTKYLELQSEMENLQ

AT5G64330.2 Phototropic-responsive NPH3 family protein4.8e-0659.18Show/hide
Query:  MSVARLVDSYLTEVAKERNLSLTKFQ----ACPTPAEHERKRLWRVMDS
        M VARLVDSYLTEVA++RNL LTKFQ    A P  A      L+R +DS
Subjt:  MSVARLVDSYLTEVAKERNLSLTKFQ----ACPTPAEHERKRLWRVMDS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGTGTTGCAAGGCTTGTTGATAGTTATCTAACAGAGGTGGCCAAAGAGAGAAACCTTTCCTTGACAAAATTTCAAGCATGCCCTACACCAGCCGAGCACGAGAGGAA
GCGACTATGGCGAGTAATGGACAGCCAGAAGATCTCCAACGGCGCGTTCCTCTTCTCCGAGCAAGTAAAGATAAGCAATACAATTGCCAACTCGTCGCTGAAAGAAGCAA
ACTATTCGCAACTCCAACCGCTCGCAAGGAACCAAAAAACACTCTTGGAAGCTACGCCGCAGTCGCTCCAAGAAGGATGGGCAAGTGCCAAGAAAGACATCAACACATTG
AAATTTGAGCATGAGAGTGTGAAAACAAAGTATCTTGAGCTTCAAAGTGAAATGGAGAACTTACAGACAGTTTGA
mRNA sequenceShow/hide mRNA sequence
ATGAGTGTTGCAAGGCTTGTTGATAGTTATCTAACAGAGGTGGCCAAAGAGAGAAACCTTTCCTTGACAAAATTTCAAGCATGCCCTACACCAGCCGAGCACGAGAGGAA
GCGACTATGGCGAGTAATGGACAGCCAGAAGATCTCCAACGGCGCGTTCCTCTTCTCCGAGCAAGTAAAGATAAGCAATACAATTGCCAACTCGTCGCTGAAAGAAGCAA
ACTATTCGCAACTCCAACCGCTCGCAAGGAACCAAAAAACACTCTTGGAAGCTACGCCGCAGTCGCTCCAAGAAGGATGGGCAAGTGCCAAGAAAGACATCAACACATTG
AAATTTGAGCATGAGAGTGTGAAAACAAAGTATCTTGAGCTTCAAAGTGAAATGGAGAACTTACAGACAGTTTGA
Protein sequenceShow/hide protein sequence
MSVARLVDSYLTEVAKERNLSLTKFQACPTPAEHERKRLWRVMDSQKISNGAFLFSEQVKISNTIANSSLKEANYSQLQPLARNQKTLLEATPQSLQEGWASAKKDINTL
KFEHESVKTKYLELQSEMENLQTV