CuGenDBv2

Gene ID	Sed0012917
Organism	Sechium edule (Chayote v1)
Description	binding partner of ACD11 1-like
Genome location	LG04:7490696..7493703
RNA-Seq Expression	Sed0012917
Synteny	Sed0012917
Gene Ontology terms	GO:0003723 - RNA binding (molecular function)
InterPro domains	IPR000504 - RNA recognition motif domain IPR012677 - Nucleotide-binding alpha-beta plait domain superfamily IPR035979 - RNA-binding domain superfamily

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

XP_004148750.1 binding partner of ACD11 1 isoform X1 [Cucumis sativus]

8.0e-130

90.14

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Query:  MSVKTIKVSNVSLGASERDIKEFFSFSGDIQYLEMQSESERSQIAYVTFEDAQGAETAMLLSGATIVDLSVNITLCPEYELPPEATAPPPAPGAKAPGTN
        MS+KT++VSNVSLGASERDIKEFFSFSGDI+YLEMQSE+ERSQ AYVTF+DAQGAETA+LLSGATIVDLSVNITLCP+YELPPEATAPPPAPG K PG  
Subjt:  MSVKTIKVSNVSLGASERDIKEFFSFSGDIQYLEMQSESERSQIAYVTFEDAQGAETAMLLSGATIVDLSVNITLCPEYELPPEATAPPPAPGAKAPGTN

Query:  ESAFRKAEDVVSGILAKGVLLGKEAVNSAKAFDEKHQLSSTASAKVATFDKKVGLTEKISAGTSLVSGKVREVDQKFQVSEKTKSAFAVAEEKVSNAGSA
        ESAFRKAEDVVSG+LAKG +LGK+A+NSAKAFDEKHQL+STASAKVATFDKK+G TEKISAGTSLVS KVREVDQKFQVSEKTKSAFAVAEEKVSNAGSA
Subjt:  ESAFRKAEDVVSGILAKGVLLGKEAVNSAKAFDEKHQLSSTASAKVATFDKKVGLTEKISAGTSLVSGKVREVDQKFQVSEKTKSAFAVAEEKVSNAGSA

Query:  IMKNRIVMSGTSWVADTFSKVAKAAGEVGQKTKEKVVVSEEEQRKKTVEDFAKVHLSESPKAASAPP-EPQQRPKPEPAQGLIL
        IMKNR VMSGTSWVADTF++VAKAAGEVGQKTKEKVVV+EEEQ+KKTVEDFAKVHLSESPKAASAPP EPQQRPKPEPAQGLIL
Subjt:  IMKNRIVMSGTSWVADTFSKVAKAAGEVGQKTKEKVVVSEEEQRKKTVEDFAKVHLSESPKAASAPP-EPQQRPKPEPAQGLIL

XP_008448657.1 PREDICTED: binding partner of ACD11 1 isoform X1 [Cucumis melo]

6.2e-130

90.49

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Query:  MSVKTIKVSNVSLGASERDIKEFFSFSGDIQYLEMQSESERSQIAYVTFEDAQGAETAMLLSGATIVDLSVNITLCPEYELPPEATAPPPAPGAKAPGTN
        MS+KT+KVSNVSLGASERDIKEFFSFSGDI+YLEMQSE+ERSQ AYVTF+DAQGAETA+LLSGATIVDLSVNITLCP+YELPPEATAPPPAPG K PG  
Subjt:  MSVKTIKVSNVSLGASERDIKEFFSFSGDIQYLEMQSESERSQIAYVTFEDAQGAETAMLLSGATIVDLSVNITLCPEYELPPEATAPPPAPGAKAPGTN

Query:  ESAFRKAEDVVSGILAKGVLLGKEAVNSAKAFDEKHQLSSTASAKVATFDKKVGLTEKISAGTSLVSGKVREVDQKFQVSEKTKSAFAVAEEKVSNAGSA
        ESAFRKAEDVVSG+LAKG +LGK+A+NSAKAFDEKHQL+STASAKVAT DKK+G TEKISAGTSLVS KVREVDQKFQVSEKTKSAFAVAEEKVSNAGSA
Subjt:  ESAFRKAEDVVSGILAKGVLLGKEAVNSAKAFDEKHQLSSTASAKVATFDKKVGLTEKISAGTSLVSGKVREVDQKFQVSEKTKSAFAVAEEKVSNAGSA

Query:  IMKNRIVMSGTSWVADTFSKVAKAAGEVGQKTKEKVVVSEEEQRKKTVEDFAKVHLSESPKAASAPP-EPQQRPKPEPAQGLIL
        IMKNR VMSGTSWVADTF+KVAKAAGEVGQKTKEKVVV+EEEQ+KKTVEDFAKVHLSESPKAASAPP EPQQRPKPEPAQGLIL
Subjt:  IMKNRIVMSGTSWVADTFSKVAKAAGEVGQKTKEKVVVSEEEQRKKTVEDFAKVHLSESPKAASAPP-EPQQRPKPEPAQGLIL

XP_008448658.1 PREDICTED: binding partner of ACD11 1 isoform X2 [Cucumis melo]

1.8e-129

90.14

Show/hide

Query:  MSVKTIKVSNVSLGASERDIKEFFSFSGDIQYLEMQSESERSQIAYVTFEDAQGAETAMLLSGATIVDLSVNITLCPEYELPPEATAPPPAPGAKAPGTN
        M +KT+KVSNVSLGASERDIKEFFSFSGDI+YLEMQSE+ERSQ AYVTF+DAQGAETA+LLSGATIVDLSVNITLCP+YELPPEATAPPPAPG K PG  
Subjt:  MSVKTIKVSNVSLGASERDIKEFFSFSGDIQYLEMQSESERSQIAYVTFEDAQGAETAMLLSGATIVDLSVNITLCPEYELPPEATAPPPAPGAKAPGTN

Query:  ESAFRKAEDVVSGILAKGVLLGKEAVNSAKAFDEKHQLSSTASAKVATFDKKVGLTEKISAGTSLVSGKVREVDQKFQVSEKTKSAFAVAEEKVSNAGSA
        ESAFRKAEDVVSG+LAKG +LGK+A+NSAKAFDEKHQL+STASAKVAT DKK+G TEKISAGTSLVS KVREVDQKFQVSEKTKSAFAVAEEKVSNAGSA
Subjt:  ESAFRKAEDVVSGILAKGVLLGKEAVNSAKAFDEKHQLSSTASAKVATFDKKVGLTEKISAGTSLVSGKVREVDQKFQVSEKTKSAFAVAEEKVSNAGSA

Query:  IMKNRIVMSGTSWVADTFSKVAKAAGEVGQKTKEKVVVSEEEQRKKTVEDFAKVHLSESPKAASAPP-EPQQRPKPEPAQGLIL
        IMKNR VMSGTSWVADTF+KVAKAAGEVGQKTKEKVVV+EEEQ+KKTVEDFAKVHLSESPKAASAPP EPQQRPKPEPAQGLIL
Subjt:  IMKNRIVMSGTSWVADTFSKVAKAAGEVGQKTKEKVVVSEEEQRKKTVEDFAKVHLSESPKAASAPP-EPQQRPKPEPAQGLIL

XP_038906357.1 binding partner of ACD11 1-like isoform X1 [Benincasa hispida]

2.1e-130

91.2

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Query:  MSVKTIKVSNVSLGASERDIKEFFSFSGDIQYLEMQSESERSQIAYVTFEDAQGAETAMLLSGATIVDLSVNITLCPEYELPPEATAPPPAPGAKAPGTN
        MS+KT+KVSNVSLGASERDIKEFFSFSGDI+YLEMQSESERSQIAYVTF+D QGAETA+LLSGATIVDLSVNITLCP+YELPPEATAPPPAPG KAPG  
Subjt:  MSVKTIKVSNVSLGASERDIKEFFSFSGDIQYLEMQSESERSQIAYVTFEDAQGAETAMLLSGATIVDLSVNITLCPEYELPPEATAPPPAPGAKAPGTN

Query:  ESAFRKAEDVVSGILAKGVLLGKEAVNSAKAFDEKHQLSSTASAKVATFDKKVGLTEKISAGTSLVSGKVREVDQKFQVSEKTKSAFAVAEEKVSNAGSA
        ESAFRKAEDVVSG+LAKG +LGK+A+NSAKAFDEKHQLSSTASAKVAT DKK+G TEKISAGT LVS KVREVDQKFQVSEKTKSAFAVAEEKVSNAGSA
Subjt:  ESAFRKAEDVVSGILAKGVLLGKEAVNSAKAFDEKHQLSSTASAKVATFDKKVGLTEKISAGTSLVSGKVREVDQKFQVSEKTKSAFAVAEEKVSNAGSA

Query:  IMKNRIVMSGTSWVADTFSKVAKAAGEVGQKTKEKVVVSEEEQRKKTVEDFAKVHLSESPKAASAPP-EPQQRPKPEPAQGLIL
        IMKNR VMSGTSWVAD F+KVAKAAGEVGQKTKEKVVVSEEEQ+KKTVEDFAKVHLSESPKAASAPP EPQQRPKPEPAQGLIL
Subjt:  IMKNRIVMSGTSWVADTFSKVAKAAGEVGQKTKEKVVVSEEEQRKKTVEDFAKVHLSESPKAASAPP-EPQQRPKPEPAQGLIL

XP_038906358.1 binding partner of ACD11 1-like isoform X2 [Benincasa hispida]

6.2e-130

90.85

Show/hide

Query:  MSVKTIKVSNVSLGASERDIKEFFSFSGDIQYLEMQSESERSQIAYVTFEDAQGAETAMLLSGATIVDLSVNITLCPEYELPPEATAPPPAPGAKAPGTN
        M +KT+KVSNVSLGASERDIKEFFSFSGDI+YLEMQSESERSQIAYVTF+D QGAETA+LLSGATIVDLSVNITLCP+YELPPEATAPPPAPG KAPG  
Subjt:  MSVKTIKVSNVSLGASERDIKEFFSFSGDIQYLEMQSESERSQIAYVTFEDAQGAETAMLLSGATIVDLSVNITLCPEYELPPEATAPPPAPGAKAPGTN

Query:  ESAFRKAEDVVSGILAKGVLLGKEAVNSAKAFDEKHQLSSTASAKVATFDKKVGLTEKISAGTSLVSGKVREVDQKFQVSEKTKSAFAVAEEKVSNAGSA
        ESAFRKAEDVVSG+LAKG +LGK+A+NSAKAFDEKHQLSSTASAKVAT DKK+G TEKISAGT LVS KVREVDQKFQVSEKTKSAFAVAEEKVSNAGSA
Subjt:  ESAFRKAEDVVSGILAKGVLLGKEAVNSAKAFDEKHQLSSTASAKVATFDKKVGLTEKISAGTSLVSGKVREVDQKFQVSEKTKSAFAVAEEKVSNAGSA

Query:  IMKNRIVMSGTSWVADTFSKVAKAAGEVGQKTKEKVVVSEEEQRKKTVEDFAKVHLSESPKAASAPP-EPQQRPKPEPAQGLIL
        IMKNR VMSGTSWVAD F+KVAKAAGEVGQKTKEKVVVSEEEQ+KKTVEDFAKVHLSESPKAASAPP EPQQRPKPEPAQGLIL
Subjt:  IMKNRIVMSGTSWVADTFSKVAKAAGEVGQKTKEKVVVSEEEQRKKTVEDFAKVHLSESPKAASAPP-EPQQRPKPEPAQGLIL

TrEMBL top hits

e value

%identity

Alignment

A0A0A0L545 RRM domain-containing protein

3.9e-130

90.14

Show/hide

Query:  MSVKTIKVSNVSLGASERDIKEFFSFSGDIQYLEMQSESERSQIAYVTFEDAQGAETAMLLSGATIVDLSVNITLCPEYELPPEATAPPPAPGAKAPGTN
        MS+KT++VSNVSLGASERDIKEFFSFSGDI+YLEMQSE+ERSQ AYVTF+DAQGAETA+LLSGATIVDLSVNITLCP+YELPPEATAPPPAPG K PG  
Subjt:  MSVKTIKVSNVSLGASERDIKEFFSFSGDIQYLEMQSESERSQIAYVTFEDAQGAETAMLLSGATIVDLSVNITLCPEYELPPEATAPPPAPGAKAPGTN

Query:  ESAFRKAEDVVSGILAKGVLLGKEAVNSAKAFDEKHQLSSTASAKVATFDKKVGLTEKISAGTSLVSGKVREVDQKFQVSEKTKSAFAVAEEKVSNAGSA
        ESAFRKAEDVVSG+LAKG +LGK+A+NSAKAFDEKHQL+STASAKVATFDKK+G TEKISAGTSLVS KVREVDQKFQVSEKTKSAFAVAEEKVSNAGSA
Subjt:  ESAFRKAEDVVSGILAKGVLLGKEAVNSAKAFDEKHQLSSTASAKVATFDKKVGLTEKISAGTSLVSGKVREVDQKFQVSEKTKSAFAVAEEKVSNAGSA

Query:  IMKNRIVMSGTSWVADTFSKVAKAAGEVGQKTKEKVVVSEEEQRKKTVEDFAKVHLSESPKAASAPP-EPQQRPKPEPAQGLIL
        IMKNR VMSGTSWVADTF++VAKAAGEVGQKTKEKVVV+EEEQ+KKTVEDFAKVHLSESPKAASAPP EPQQRPKPEPAQGLIL
Subjt:  IMKNRIVMSGTSWVADTFSKVAKAAGEVGQKTKEKVVVSEEEQRKKTVEDFAKVHLSESPKAASAPP-EPQQRPKPEPAQGLIL

A0A1S3BK74 binding partner of ACD11 1 isoform X2

8.7e-130

90.14

Show/hide

Query:  MSVKTIKVSNVSLGASERDIKEFFSFSGDIQYLEMQSESERSQIAYVTFEDAQGAETAMLLSGATIVDLSVNITLCPEYELPPEATAPPPAPGAKAPGTN
        M +KT+KVSNVSLGASERDIKEFFSFSGDI+YLEMQSE+ERSQ AYVTF+DAQGAETA+LLSGATIVDLSVNITLCP+YELPPEATAPPPAPG K PG  
Subjt:  MSVKTIKVSNVSLGASERDIKEFFSFSGDIQYLEMQSESERSQIAYVTFEDAQGAETAMLLSGATIVDLSVNITLCPEYELPPEATAPPPAPGAKAPGTN

Query:  ESAFRKAEDVVSGILAKGVLLGKEAVNSAKAFDEKHQLSSTASAKVATFDKKVGLTEKISAGTSLVSGKVREVDQKFQVSEKTKSAFAVAEEKVSNAGSA
        ESAFRKAEDVVSG+LAKG +LGK+A+NSAKAFDEKHQL+STASAKVAT DKK+G TEKISAGTSLVS KVREVDQKFQVSEKTKSAFAVAEEKVSNAGSA
Subjt:  ESAFRKAEDVVSGILAKGVLLGKEAVNSAKAFDEKHQLSSTASAKVATFDKKVGLTEKISAGTSLVSGKVREVDQKFQVSEKTKSAFAVAEEKVSNAGSA

Query:  IMKNRIVMSGTSWVADTFSKVAKAAGEVGQKTKEKVVVSEEEQRKKTVEDFAKVHLSESPKAASAPP-EPQQRPKPEPAQGLIL
        IMKNR VMSGTSWVADTF+KVAKAAGEVGQKTKEKVVV+EEEQ+KKTVEDFAKVHLSESPKAASAPP EPQQRPKPEPAQGLIL
Subjt:  IMKNRIVMSGTSWVADTFSKVAKAAGEVGQKTKEKVVVSEEEQRKKTVEDFAKVHLSESPKAASAPP-EPQQRPKPEPAQGLIL

A0A1S3BK81 binding partner of ACD11 1 isoform X1

3.0e-130

90.49

Show/hide

Query:  MSVKTIKVSNVSLGASERDIKEFFSFSGDIQYLEMQSESERSQIAYVTFEDAQGAETAMLLSGATIVDLSVNITLCPEYELPPEATAPPPAPGAKAPGTN
        MS+KT+KVSNVSLGASERDIKEFFSFSGDI+YLEMQSE+ERSQ AYVTF+DAQGAETA+LLSGATIVDLSVNITLCP+YELPPEATAPPPAPG K PG  
Subjt:  MSVKTIKVSNVSLGASERDIKEFFSFSGDIQYLEMQSESERSQIAYVTFEDAQGAETAMLLSGATIVDLSVNITLCPEYELPPEATAPPPAPGAKAPGTN

Query:  ESAFRKAEDVVSGILAKGVLLGKEAVNSAKAFDEKHQLSSTASAKVATFDKKVGLTEKISAGTSLVSGKVREVDQKFQVSEKTKSAFAVAEEKVSNAGSA
        ESAFRKAEDVVSG+LAKG +LGK+A+NSAKAFDEKHQL+STASAKVAT DKK+G TEKISAGTSLVS KVREVDQKFQVSEKTKSAFAVAEEKVSNAGSA
Subjt:  ESAFRKAEDVVSGILAKGVLLGKEAVNSAKAFDEKHQLSSTASAKVATFDKKVGLTEKISAGTSLVSGKVREVDQKFQVSEKTKSAFAVAEEKVSNAGSA

Query:  IMKNRIVMSGTSWVADTFSKVAKAAGEVGQKTKEKVVVSEEEQRKKTVEDFAKVHLSESPKAASAPP-EPQQRPKPEPAQGLIL
        IMKNR VMSGTSWVADTF+KVAKAAGEVGQKTKEKVVV+EEEQ+KKTVEDFAKVHLSESPKAASAPP EPQQRPKPEPAQGLIL
Subjt:  IMKNRIVMSGTSWVADTFSKVAKAAGEVGQKTKEKVVVSEEEQRKKTVEDFAKVHLSESPKAASAPP-EPQQRPKPEPAQGLIL

A0A5A7UH68 Binding partner of ACD11 1 isoform X2

8.7e-130

90.14

Show/hide

Query:  MSVKTIKVSNVSLGASERDIKEFFSFSGDIQYLEMQSESERSQIAYVTFEDAQGAETAMLLSGATIVDLSVNITLCPEYELPPEATAPPPAPGAKAPGTN
        M +KT+KVSNVSLGASERDIKEFFSFSGDI+YLEMQSE+ERSQ AYVTF+DAQGAETA+LLSGATIVDLSVNITLCP+YELPPEATAPPPAPG K PG  
Subjt:  MSVKTIKVSNVSLGASERDIKEFFSFSGDIQYLEMQSESERSQIAYVTFEDAQGAETAMLLSGATIVDLSVNITLCPEYELPPEATAPPPAPGAKAPGTN

Query:  ESAFRKAEDVVSGILAKGVLLGKEAVNSAKAFDEKHQLSSTASAKVATFDKKVGLTEKISAGTSLVSGKVREVDQKFQVSEKTKSAFAVAEEKVSNAGSA
        ESAFRKAEDVVSG+LAKG +LGK+A+NSAKAFDEKHQL+STASAKVAT DKK+G TEKISAGTSLVS KVREVDQKFQVSEKTKSAFAVAEEKVSNAGSA
Subjt:  ESAFRKAEDVVSGILAKGVLLGKEAVNSAKAFDEKHQLSSTASAKVATFDKKVGLTEKISAGTSLVSGKVREVDQKFQVSEKTKSAFAVAEEKVSNAGSA

Query:  IMKNRIVMSGTSWVADTFSKVAKAAGEVGQKTKEKVVVSEEEQRKKTVEDFAKVHLSESPKAASAPP-EPQQRPKPEPAQGLIL
        IMKNR VMSGTSWVADTF+KVAKAAGEVGQKTKEKVVV+EEEQ+KKTVEDFAKVHLSESPKAASAPP EPQQRPKPEPAQGLIL
Subjt:  IMKNRIVMSGTSWVADTFSKVAKAAGEVGQKTKEKVVVSEEEQRKKTVEDFAKVHLSESPKAASAPP-EPQQRPKPEPAQGLIL

A0A6J1CV14 binding partner of ACD11 1-like isoform X1

4.5e-126

87.63

Show/hide

Query:  MSVKTIKVSNVSLGASERDIKEFFSFSGDIQYLEMQSESERSQIAYVTFEDAQGAETAMLLSGATIVDLSVNITLCPEYELPPEATAPPPAPGAKAPGTN
        MS+KT+KVSNVSLGAS+RD+KEFFSFSGDI+YLEMQSESERSQ AYVTF+DAQGAETA+LLSGATIVDLSVNITLCP+YELPPEATAPP A G  APG  
Subjt:  MSVKTIKVSNVSLGASERDIKEFFSFSGDIQYLEMQSESERSQIAYVTFEDAQGAETAMLLSGATIVDLSVNITLCPEYELPPEATAPPPAPGAKAPGTN

Query:  ESAFRKAEDVVSGILAKGVLLGKEAVNSAKAFDEKHQLSSTASAKVATFDKKVGLTEKISAGTSLVSGKVREVDQKFQVSEKTKSAFAVAEEKVSNAGSA
        ESAF+KAEDVVSG+LAKG +LGK+A+NSAKAFDEKHQLSSTASAKVATFDKK+G TEKISAGT LVS KVREVDQKFQVSEKTKSAFAVAE KVSNAGSA
Subjt:  ESAFRKAEDVVSGILAKGVLLGKEAVNSAKAFDEKHQLSSTASAKVATFDKKVGLTEKISAGTSLVSGKVREVDQKFQVSEKTKSAFAVAEEKVSNAGSA

Query:  IMKNRIVMSGTSWVADTFSKVAKAAGEVGQKTKEKVVVSEEEQRKKTVEDFAKVHLSESPKAASAPPEPQQRPKPEPAQGLIL
        IM NR VMSGTSWVAD F+KVAKAAGEVGQKTKEK V SEEEQ+KKTVEDFA+VHLSESPKAA+APPEPQQRPKPEPAQGLIL
Subjt:  IMKNRIVMSGTSWVADTFSKVAKAAGEVGQKTKEKVVVSEEEQRKKTVEDFAKVHLSESPKAASAPPEPQQRPKPEPAQGLIL

SwissProt top hits

e value

%identity

Alignment

P87216 Protein vip1

9.3e-04

25.97

Show/hide

Query:  VSNVSLGASERDIKEFFSFSGDIQYLEMQSESERSQIAYVTFEDAQGAETAMLLSGATIVDLSVNITLCPEYELPPEATAPPPAPGAKAPGTNESAFRKA
        V+N+S   +E+ I +FFSF G +  +  +   E +Q A + FE     +TA+LL  A +    + IT     +    +T      G       E   R A
Subjt:  VSNVSLGASERDIKEFFSFSGDIQYLEMQSESERSQIAYVTFEDAQGAETAMLLSGATIVDLSVNITLCPEYELPPEATAPPPAPGAKAPGTNESAFRKA

Query:  EDVVSGILAKGVLLGKEAVNSAKAFDEKHQLSSTASAKVATFDKKVGLTEKISAGTSL------VSGKVREVDQKFQVSEK
          ++S +L++G  L    +  +   D+ + +SS          K  G+ E   +G         V+ K  EVD KF +S+K
Subjt:  EDVVSGILAKGVLLGKEAVNSAKAFDEKHQLSSTASAKVATFDKKVGLTEKISAGTSL------VSGKVREVDQKFQVSEK

Q9LFD5 Binding partner of ACD11 1

3.2e-65

54.92

Show/hide

Query:  VKTIKVSNVSLGASERDIKEFFSFSGDIQYLEMQSESERSQIAYVTFEDAQGAETAMLLSGATIVDLSVNITLCPEYELPPEATAPPPAPGAKAPGTN-E
        V+++KV N+S GA+E DIKEFFSFSG+++ +++QS +E S  AYVTF++ QGAETA+LLSGA+I D SV I L P Y       +PP AP A+   +  E
Subjt:  VKTIKVSNVSLGASERDIKEFFSFSGDIQYLEMQSESERSQIAYVTFEDAQGAETAMLLSGATIVDLSVNITLCPEYELPPEATAPPPAPGAKAPGTN-E

Query:  SAFRKAEDVVSGILAKGVLLGKEAVNSAKAFDEKHQLSSTASAKVATFDKKVGLTEKISAGTSLVSGKVREVDQKFQVSEKTKSAFAVAEEKVSNAGSAI
        S  +KAEDVVS +LAKG +LGK+AV  AKAFDEKH  +STA+A VA+ D+K+GL++K++AGTSLV+ K++ VDQ FQV+E+TKS +A AE+ VS+AGSA+
Subjt:  SAFRKAEDVVSGILAKGVLLGKEAVNSAKAFDEKHQLSSTASAKVATFDKKVGLTEKISAGTSLVSGKVREVDQKFQVSEKTKSAFAVAEEKVSNAGSAI

Query:  MKNRIVMSGTSWVADTFSKVAKAAGEVGQKTKEKVVVSEEEQ----RKKTVEDFAKVHLSESPK
        MKNR V++G SW A  F++VA+AAGEVGQKTKEKV   +  Q    +++  E ++ +H SE  K
Subjt:  MKNRIVMSGTSWVADTFSKVAKAAGEVGQKTKEKVVVSEEEQ----RKKTVEDFAKVHLSESPK

Arabidopsis top hits

e value

%identity

Alignment

AT4G17720.1 RNA-binding (RRM/RBD/RNP motifs) family protein

3.0e-90

65.45

Show/hide

Query:  MSVKTIKVSNVSLGASERDIKEFFSFSGDIQYLEMQSESERSQIAYVTFEDAQGAETAMLLSGATIVDLSVNITLCPEYELPPEATAP-PPAPGAKAPGT
        M++ T+KVSNVSLGA++RD+KEFFSFSGDI YLE QSE+ER+++AYVTF+D QGAETA+LLSGATIVD SV +++ P+Y+L PEA A   P    K+P  
Subjt:  MSVKTIKVSNVSLGASERDIKEFFSFSGDIQYLEMQSESERSQIAYVTFEDAQGAETAMLLSGATIVDLSVNITLCPEYELPPEATAP-PPAPGAKAPGT

Query:  NESAFRKAEDVVSGILAKGVLLGKEAVNSAKAFDEKHQLSSTASAKVATFDKKVGLTEKISAGTSLVSGKVREVDQKFQVSEKTKSAFAVAEEKVSNAGS
         +S  RKAEDVVS +LAKG +LGK+A+  AK+ DEKHQL+STASAKVA+FDKK+G T+KI+ GT +V  KVREVDQK+QVSEKTKSA A AE+ VSNAGS
Subjt:  NESAFRKAEDVVSGILAKGVLLGKEAVNSAKAFDEKHQLSSTASAKVATFDKKVGLTEKISAGTSLVSGKVREVDQKFQVSEKTKSAFAVAEEKVSNAGS

Query:  AIMKNRIVMSGTSWVADTFSKVAKAAGEVGQKTKEKVVVSEEEQRKKTVEDFAKVHLSESPKAASAPPEPQQRPK
        AIMKNR V++G +WV   F+KVAKAA EVGQK KEKV ++EEE ++K V++FA+VHLSESPKAAS+  E ++  K
Subjt:  AIMKNRIVMSGTSWVADTFSKVAKAAGEVGQKTKEKVVVSEEEQRKKTVEDFAKVHLSESPKAASAPPEPQQRPK

AT5G16840.1 binding partner of acd11 1

2.3e-66

54.92

Show/hide

Query:  VKTIKVSNVSLGASERDIKEFFSFSGDIQYLEMQSESERSQIAYVTFEDAQGAETAMLLSGATIVDLSVNITLCPEYELPPEATAPPPAPGAKAPGTN-E
        V+++KV N+S GA+E DIKEFFSFSG+++ +++QS +E S  AYVTF++ QGAETA+LLSGA+I D SV I L P Y       +PP AP A+   +  E
Subjt:  VKTIKVSNVSLGASERDIKEFFSFSGDIQYLEMQSESERSQIAYVTFEDAQGAETAMLLSGATIVDLSVNITLCPEYELPPEATAPPPAPGAKAPGTN-E

Query:  SAFRKAEDVVSGILAKGVLLGKEAVNSAKAFDEKHQLSSTASAKVATFDKKVGLTEKISAGTSLVSGKVREVDQKFQVSEKTKSAFAVAEEKVSNAGSAI
        S  +KAEDVVS +LAKG +LGK+AV  AKAFDEKH  +STA+A VA+ D+K+GL++K++AGTSLV+ K++ VDQ FQV+E+TKS +A AE+ VS+AGSA+
Subjt:  SAFRKAEDVVSGILAKGVLLGKEAVNSAKAFDEKHQLSSTASAKVATFDKKVGLTEKISAGTSLVSGKVREVDQKFQVSEKTKSAFAVAEEKVSNAGSAI

Query:  MKNRIVMSGTSWVADTFSKVAKAAGEVGQKTKEKVVVSEEEQ----RKKTVEDFAKVHLSESPK
        MKNR V++G SW A  F++VA+AAGEVGQKTKEKV   +  Q    +++  E ++ +H SE  K
Subjt:  MKNRIVMSGTSWVADTFSKVAKAAGEVGQKTKEKVVVSEEEQ----RKKTVEDFAKVHLSESPK

AT5G16840.2 binding partner of acd11 1

1.2e-67

54.92

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Query:  VKTIKVSNVSLGASERDIKEFFSFSGDIQYLEMQSESERSQIAYVTFEDAQGAETAMLLSGATIVDLSVNITLCPEYELPPEATAPPPAPGAKAPGTN-E
        V+++KV N+S GA+E DIKEFFSFSG+++ +++QS +E S  AYVTF++ QGAETA+LLSGA+I D SV I L P Y       +PP AP A+   +  E
Subjt:  VKTIKVSNVSLGASERDIKEFFSFSGDIQYLEMQSESERSQIAYVTFEDAQGAETAMLLSGATIVDLSVNITLCPEYELPPEATAPPPAPGAKAPGTN-E

Query:  SAFRKAEDVVSGILAKGVLLGKEAVNSAKAFDEKHQLSSTASAKVATFDKKVGLTEKISAGTSLVSGKVREVDQKFQVSEKTKSAFAVAEEKVSNAGSAI
        S  +KAEDVVS +LAKG +LGK+AV  AKAFDEKH  +STA+A VA+ D+K+GL++K++AGTSLV+ K++ VDQ FQV+E+TKS +A AE+ VS+AGSA+
Subjt:  SAFRKAEDVVSGILAKGVLLGKEAVNSAKAFDEKHQLSSTASAKVATFDKKVGLTEKISAGTSLVSGKVREVDQKFQVSEKTKSAFAVAEEKVSNAGSAI

Query:  MKNRIVMSGTSWVADTFSKVAKAAGEVGQKTKEKVVVSEEEQ----RKKTVEDFAKVHLSESPK
        MKNR V++G SW A  F++VA+AAGEVGQKTKEKV   +  Q    +++  E ++ +H SE  K
Subjt:  MKNRIVMSGTSWVADTFSKVAKAAGEVGQKTKEKVVVSEEEQ----RKKTVEDFAKVHLSESPK

AT5G16840.3 binding partner of acd11 1

6.0e-67

54.89

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Query:  MSVKTIKVSNVSLGASERDIKEFFSFSGDIQYLEMQSESERSQIAYVTFEDAQGAETAMLLSGATIVDLSVNITLCPEYELPPEATAPPPAPGAKAPGTN
        M+V+++KV N+S GA+E DIKEFFSFSG+++ +++QS +E S  AYVTF++ QGAETA+LLSGA+I D SV I L P Y       +PP AP A+   + 
Subjt:  MSVKTIKVSNVSLGASERDIKEFFSFSGDIQYLEMQSESERSQIAYVTFEDAQGAETAMLLSGATIVDLSVNITLCPEYELPPEATAPPPAPGAKAPGTN

Query:  -ESAFRKAEDVVSGILAKGVLLGKEAVNSAKAFDEKHQLSSTASAKVATFDKKVGLTEKISAGTSLVSGKVREVDQKFQVSEKTKSAFAVAEEKVSNAGS
         ES  +KAEDVVS +LAKG +LGK+AV  AKAFDEKH  +STA+A VA+ D+K+GL++K++AGTSLV+ K++ VDQ FQV+E+TKS +A AE+ VS+AGS
Subjt:  -ESAFRKAEDVVSGILAKGVLLGKEAVNSAKAFDEKHQLSSTASAKVATFDKKVGLTEKISAGTSLVSGKVREVDQKFQVSEKTKSAFAVAEEKVSNAGS

Query:  AIMKNRIVMSGTSWVADTFSKVAKAAGEVGQKTKEKVVVSEEEQ----RKKTVEDFAKVHLSESPK
        A+MKNR V++G SW A  F++VA+AAGEVGQKTKEKV   +  Q    +++  E ++ +H SE  K
Subjt:  AIMKNRIVMSGTSWVADTFSKVAKAAGEVGQKTKEKVVVSEEEQ----RKKTVEDFAKVHLSESPK

AT5G46870.1 RNA-binding (RRM/RBD/RNP motifs) family protein

5.1e-82

59.86

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Query:  MSVKTIKVSNVSLGASERDIKEFFSFSGDIQYLEMQSESERSQIAYVTFEDAQGAETAMLLSGATIVDLSVNITLCPEYELPPEATAP----PPAPGAKA
        MS+ T+KVSNVSL A+ERD+KEFFSFSGDI YLE QSE++ S++AYVTF+D QGAETA+LL+G+TIVD SV +T+ P+Y+LPP+A A       +  + +
Subjt:  MSVKTIKVSNVSLGASERDIKEFFSFSGDIQYLEMQSESERSQIAYVTFEDAQGAETAMLLSGATIVDLSVNITLCPEYELPPEATAP----PPAPGAKA

Query:  PGTNE-SAFRKAEDVVSGILAKGVLLGKEAVNSAKAFDEKHQLSSTASAKVATFDKKVGLTEKISAGTSLVSGKVREVDQKFQVSEKTKSAFAVAEEKVS
        P   + S FRKAEDVVSG+++KG +LGK+A+  AK+ DEKHQL+STASA+V +FDK++G TEKI+ GT++VS KV+EVDQKFQV+EKTKSA A AE+ VS
Subjt:  PGTNE-SAFRKAEDVVSGILAKGVLLGKEAVNSAKAFDEKHQLSSTASAKVATFDKKVGLTEKISAGTSLVSGKVREVDQKFQVSEKTKSAFAVAEEKVS

Query:  NAGSAIMKNRIVMSGTSWVADTFSKVAKAAGEVGQKTKEKVVVS--EEEQRKKTVEDFAKVHLSESPKAA------SAPPEPQQRPKPE
        NAGSAIMKNR V++G +WV   F++V+KAA EVGQK KEKV ++  EEE++KK V++ A VHL+ESPKA       S  PE + +P  E
Subjt:  NAGSAIMKNRIVMSGTSWVADTFSKVAKAAGEVGQKTKEKVVVS--EEEQRKKTVEDFAKVHLSESPKAA------SAPPEPQQRPKPE

Sequences

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CDS sequence

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ATGTCGGTTAAGACTATTAAAGTCAGCAATGTCTCCTTGGGAGCATCTGAACGAGATATCAAGGAGTTCTTTTCATTTTCTGGTGACATTCAATATCTGGAAATGCAGAG
TGAAAGTGAGCGGTCTCAAATTGCTTATGTGACCTTCGAGGATGCACAAGGAGCAGAGACTGCCATGCTTCTGTCTGGAGCAACTATAGTGGATCTTTCTGTCAATATCA
CTCTGTGTCCCGAGTATGAGCTCCCTCCTGAAGCTACTGCACCACCCCCTGCCCCAGGAGCTAAAGCACCTGGTACTAATGAATCCGCCTTTAGGAAAGCAGAGGATGTA
GTTAGTGGTATACTTGCCAAGGGAGTTCTCTTGGGTAAAGAGGCAGTAAACTCAGCAAAGGCATTTGATGAGAAACACCAGTTATCTTCTACGGCCTCAGCCAAAGTTGC
TACATTCGATAAAAAAGTTGGGCTAACCGAGAAAATTAGTGCTGGCACATCATTGGTGAGTGGCAAAGTTCGAGAAGTTGACCAGAAGTTTCAGGTTTCGGAGAAGACTA
AATCAGCATTTGCAGTTGCAGAGGAAAAAGTCAGCAATGCTGGATCTGCCATTATGAAAAACCGAATTGTAATGAGCGGGACTAGCTGGGTTGCTGATACTTTCAGTAAG
GTAGCCAAGGCAGCTGGAGAAGTTGGTCAGAAAACAAAAGAGAAGGTTGTGGTGTCCGAAGAAGAACAGAGAAAGAAGACGGTCGAAGATTTTGCTAAGGTTCATCTCTC
GGAATCCCCTAAAGCAGCATCAGCACCCCCTGAGCCTCAGCAACGTCCCAAACCCGAACCAGCTCAAGGTCTGATTCTCTGA

mRNA sequence

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GCCATAGCCATTTTTCTTTCATCACAGAATCTCAAATTCAAAATCAAAATCTCCGTTCAGATTCGTCTAGGTTTCCGTTTTCCGGCGATCTCCGGTTGATTCCGTCCCAT
TCCGGCGATTTCACCTTCGTCATTTCCAGAGATGTCGGTTAAGACTATTAAAGTCAGCAATGTCTCCTTGGGAGCATCTGAACGAGATATCAAGGAGTTCTTTTCATTTT
CTGGTGACATTCAATATCTGGAAATGCAGAGTGAAAGTGAGCGGTCTCAAATTGCTTATGTGACCTTCGAGGATGCACAAGGAGCAGAGACTGCCATGCTTCTGTCTGGA
GCAACTATAGTGGATCTTTCTGTCAATATCACTCTGTGTCCCGAGTATGAGCTCCCTCCTGAAGCTACTGCACCACCCCCTGCCCCAGGAGCTAAAGCACCTGGTACTAA
TGAATCCGCCTTTAGGAAAGCAGAGGATGTAGTTAGTGGTATACTTGCCAAGGGAGTTCTCTTGGGTAAAGAGGCAGTAAACTCAGCAAAGGCATTTGATGAGAAACACC
AGTTATCTTCTACGGCCTCAGCCAAAGTTGCTACATTCGATAAAAAAGTTGGGCTAACCGAGAAAATTAGTGCTGGCACATCATTGGTGAGTGGCAAAGTTCGAGAAGTT
GACCAGAAGTTTCAGGTTTCGGAGAAGACTAAATCAGCATTTGCAGTTGCAGAGGAAAAAGTCAGCAATGCTGGATCTGCCATTATGAAAAACCGAATTGTAATGAGCGG
GACTAGCTGGGTTGCTGATACTTTCAGTAAGGTAGCCAAGGCAGCTGGAGAAGTTGGTCAGAAAACAAAAGAGAAGGTTGTGGTGTCCGAAGAAGAACAGAGAAAGAAGA
CGGTCGAAGATTTTGCTAAGGTTCATCTCTCGGAATCCCCTAAAGCAGCATCAGCACCCCCTGAGCCTCAGCAACGTCCCAAACCCGAACCAGCTCAAGGTCTGATTCTC
TGAATTGTTGTCATGTTTGTTGATATCTATGTCTGAAAGCTCTTGTAGTTGTAATGTGTACTTCTCCTTCATTTCTGGCATGGTGCTGGTTATATTTTAGGGTAAAGATA
TAGAATAGATTTTTCCTCAATTTAGTTGTGGAATTTGATTGCATAAGATATCTTCATTTGACAGAATACAAAAACAGCAGGTTTTTCCATATTGAGAACAAATTCTGCTC
TTTCTACCATGCTATGTTGTTGTATCAATGCATTTCTGGGCTAGTTTTTGAAGTTCAGAGATTTATTTATTATGTGGTTTTAATTTTCTTTTACAAAACTTAGTTCTCTG
GAGAGATGTTGGTTGACCATTTTTAAGCATTAGTGTAGGTGTCTCTCTATCAGCGGTAAGTTCGAATCTCCTCTCTATTGTACATACAATTTAGGCCCTCTGATTTAAAC
GTTGTCCATTTTGTACATACAATTTAGCCCCCTGATTTTAACATTTTCCATTTTGTGCATACAATTTAGTCCCTCTTGTACATACAACTTAGTCCTTCCGA

Protein sequence

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MSVKTIKVSNVSLGASERDIKEFFSFSGDIQYLEMQSESERSQIAYVTFEDAQGAETAMLLSGATIVDLSVNITLCPEYELPPEATAPPPAPGAKAPGTNESAFRKAEDV
VSGILAKGVLLGKEAVNSAKAFDEKHQLSSTASAKVATFDKKVGLTEKISAGTSLVSGKVREVDQKFQVSEKTKSAFAVAEEKVSNAGSAIMKNRIVMSGTSWVADTFSK
VAKAAGEVGQKTKEKVVVSEEEQRKKTVEDFAKVHLSESPKAASAPPEPQQRPKPEPAQGLIL

Sed0012917 (gene) of Chayote v1 genome