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Sed0012927 (gene) of Chayote v1 genome

Gene IDSed0012927
OrganismSechium edule (Chayote v1)
DescriptionRING-H2 finger protein ATL52-like
Genome locationLG01:8185832..8186389
RNA-Seq ExpressionSed0012927
SyntenySed0012927
Gene Ontology termsNA
InterPro domainsIPR001841 - Zinc finger, RING-type
IPR013083 - Zinc finger, RING/FYVE/PHD-type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0067736.1 RING-H2 finger protein ATL52-like [Cucumis melo var. makuwa]1.9e-1538.1Show/hide
Query:  FLFVVLVYFIMFCIITIIIRYLTPTDQARDLDIEAGQQVRVGHQWRHFVWYETERARGQAAVQRPHIAKEEEASSSAIVTAAFKDLSKTGVEGDSECAIC
        FLFV +V  I+   +  I  Y    +Q R LDIE  Q++      +     + E  R +    + +   E E +SSA++T A+K            CAIC
Subjt:  FLFVVLVYFIMFCIITIIIRYLTPTDQARDLDIEAGQQVRVGHQWRHFVWYETERARGQAAVQRPHIAKEEEASSSAIVTAAFKDLSKTGVEGDSECAIC

Query:  MEGFEEEELCRVVECCNNFFHKDCVDRWLKIKTCCPLCRSLVHVLSR
        +E FE+EE+C VVE C + FH+DC+D+WL+I++ CPLCR LVH +S+
Subjt:  MEGFEEEELCRVVECCNNFFHKDCVDRWLKIKTCCPLCRSLVHVLSR

KAG6583431.1 RING-H2 finger protein ATL5, partial [Cucurbita argyrosperma subsp. sororia]7.3e-1539.07Show/hide
Query:  LFVVLVYFIMFCIITIIIRYLTPTDQARDLDIEAGQQVRVGHQWRHFVWYETERARGQAAV--QRPHIAKEEEASSSAIVTAAFKDLSKTGVEGDSE--C
        + V L  F+  C    +++Y     Q R LD+E     +  H  R F  +  E  R Q ++    P     EE ++S +   A+KD+ KT  E DS+  C
Subjt:  LFVVLVYFIMFCIITIIIRYLTPTDQARDLDIEAGQQVRVGHQWRHFVWYETERARGQAAV--QRPHIAKEEEASSSAIVTAAFKDLSKTGVEGDSE--C

Query:  AICMEGFEEEELCRVVECCNNFFHKDCVDRWLKIKTCCPLCRSLVHVLSRN
        AIC+EGF+EEE+C V++ C + FHK C+D+WL I++ CPLCR LV V+S N
Subjt:  AICMEGFEEEELCRVVECCNNFFHKDCVDRWLKIKTCCPLCRSLVHVLSRN

KAG7019192.1 E3 ubiquitin-protein ligase ATL42, partial [Cucurbita argyrosperma subsp. argyrosperma]7.3e-1537.14Show/hide
Query:  SPTTTMISSFVSKHPGL----SFFLFVVLVYFIMFCIITIIIRYLTPTDQARDLDIEAGQQVRVGHQWRHFVWYETERARGQAAV--QRPHIAKEEEASS
        +PT  M  +   +  GL    +  + V L  F+  C    +++Y     Q R LD+E     +  H  R F  +  E  R Q ++    P     EE ++
Subjt:  SPTTTMISSFVSKHPGL----SFFLFVVLVYFIMFCIITIIIRYLTPTDQARDLDIEAGQQVRVGHQWRHFVWYETERARGQAAV--QRPHIAKEEEASS

Query:  SAIVTAAFKDLSKTGVEGDSE--CAICMEGFEEEELCRVVECCNNFFHKDCVDRWLKIKTCCPLCRSLVHVLSRN
        S +   A+KD+ KT  E DS+  CAIC+EGF+EEELC V++ C + FHK C+D+WL I++ CPLCR LV V+S N
Subjt:  SAIVTAAFKDLSKTGVEGDSE--CAICMEGFEEEELCRVVECCNNFFHKDCVDRWLKIKTCCPLCRSLVHVLSRN

XP_022970384.1 RING-H2 finger protein ATL64-like [Cucurbita maxima]9.6e-1539.47Show/hide
Query:  LFVVLVYFIMFCIITIIIRYLTPTDQARDLDIEAGQQVRVGHQWRHFVWYETERARGQAAV----QRPHIAKEEEASSSAIVTAAFKDLSKT-GVEGDSE
        + V L  F+  C     + Y     Q R LD+E     +  H  R F  +  E  R Q ++     RP+ A+EE A  S +   A++D+  T   + D  
Subjt:  LFVVLVYFIMFCIITIIIRYLTPTDQARDLDIEAGQQVRVGHQWRHFVWYETERARGQAAV----QRPHIAKEEEASSSAIVTAAFKDLSKT-GVEGDSE

Query:  CAICMEGFEEEELCRVVECCNNFFHKDCVDRWLKIKTCCPLCRSLVHVLSRN
        CAIC+EGFEEEE+C VV+ C++ FHK C+D+WL I + CPLCR LV V+S N
Subjt:  CAICMEGFEEEELCRVVECCNNFFHKDCVDRWLKIKTCCPLCRSLVHVLSRN

XP_023520574.1 RING-H2 finger protein ATL64-like [Cucurbita pepo subsp. pepo]2.7e-1744.96Show/hide
Query:  DQARDLDIEAGQQVRVGHQWRHFVWYETERARGQAAV----QRPHIAKEEEASSSAIVTAAFKDLSKTGVEGDSE--CAICMEGFEEEELCRVVECCNNF
        +Q R LD+E     +  H  R F  +  E  R Q+++     RP+ A+EE A  S +   A+KD+ KT  E DS+  CAIC+EGFEE+E+C V++ C + 
Subjt:  DQARDLDIEAGQQVRVGHQWRHFVWYETERARGQAAV----QRPHIAKEEEASSSAIVTAAFKDLSKTGVEGDSE--CAICMEGFEEEELCRVVECCNNF

Query:  FHKDCVDRWLKIKTCCPLCRSLVHVLSRN
        FHK C+D+WL IK+ CPLCR LV V+S N
Subjt:  FHKDCVDRWLKIKTCCPLCRSLVHVLSRN

TrEMBL top hitse value%identityAlignment
A0A5A7VMH1 RING-H2 finger protein ATL52-like9.3e-1638.1Show/hide
Query:  FLFVVLVYFIMFCIITIIIRYLTPTDQARDLDIEAGQQVRVGHQWRHFVWYETERARGQAAVQRPHIAKEEEASSSAIVTAAFKDLSKTGVEGDSECAIC
        FLFV +V  I+   +  I  Y    +Q R LDIE  Q++      +     + E  R +    + +   E E +SSA++T A+K            CAIC
Subjt:  FLFVVLVYFIMFCIITIIIRYLTPTDQARDLDIEAGQQVRVGHQWRHFVWYETERARGQAAVQRPHIAKEEEASSSAIVTAAFKDLSKTGVEGDSECAIC

Query:  MEGFEEEELCRVVECCNNFFHKDCVDRWLKIKTCCPLCRSLVHVLSR
        +E FE+EE+C VVE C + FH+DC+D+WL+I++ CPLCR LVH +S+
Subjt:  MEGFEEEELCRVVECCNNFFHKDCVDRWLKIKTCCPLCRSLVHVLSR

A0A5D3BE50 RING-type E3 ubiquitin transferase4.6e-1537.41Show/hide
Query:  FLFVVLVYFIMFCIITIIIRYLTPTDQARDLDIEAGQQVRVGHQWRHFVWYETERARGQAAVQRPHIAKEEEASSSAIVTAAFKDLSKTGVEGDSECAIC
        FLFV +V  I+   +  I  Y    +Q R LDIE  Q++      +     + E  R +    + +   E E +SSA++  A+K            CAIC
Subjt:  FLFVVLVYFIMFCIITIIIRYLTPTDQARDLDIEAGQQVRVGHQWRHFVWYETERARGQAAVQRPHIAKEEEASSSAIVTAAFKDLSKTGVEGDSECAIC

Query:  MEGFEEEELCRVVECCNNFFHKDCVDRWLKIKTCCPLCRSLVHVLSR
        +E FE+EE+C VVE C + FH+DC+D+WL+I++ CPLCR LVH +S+
Subjt:  MEGFEEEELCRVVECCNNFFHKDCVDRWLKIKTCCPLCRSLVHVLSR

A0A6J1DYV0 E3 ubiquitin-protein ligase RING1-like1.3e-1436.31Show/hide
Query:  PTTTMISSFVSKHP--GLSFFLFVVLVYFIMFCIITIIIRYLTPTDQARDLDIEAGQQVRVGHQWRHFVWYETERARGQAAVQRPHIAKEEEASSSAIVT
        P T +I+   +  P  G  F  F+     ++F I+    R +  +      DIE+  QV      R F    +ERAR Q +   P     EEAS++A+  
Subjt:  PTTTMISSFVSKHP--GLSFFLFVVLVYFIMFCIITIIIRYLTPTDQARDLDIEAGQQVRVGHQWRHFVWYETERARGQAAVQRPHIAKEEEASSSAIVT

Query:  AAFKDLSKTGVEGDSECAICMEGFEEEELCRVVECCNNFFHKDCVDRWLKIKTCCPLCRSLVHVLSRN
           +++    ++ D +CAIC EGFEE+++CRV+E C +FFHKDCVD+WL ++  CPLCR  V ++S N
Subjt:  AAFKDLSKTGVEGDSECAICMEGFEEEELCRVVECCNNFFHKDCVDRWLKIKTCCPLCRSLVHVLSRN

A0A6J1HJU0 RING-type E3 ubiquitin transferase3.0e-1436Show/hide
Query:  LFVVLVYFIMFCIITIIIRYLTPTDQARDLDIEAGQQVRVGHQWRHFVWYETERARGQAAVQR--PHIAKEEEASSSAIVTAAFKDLSKT-GVEGDSECA
        + V L  F+  C    +++Y     Q R LD+E     +  H  R F  +  E  + Q ++    P     EE ++S +   A++D+  T   + D  CA
Subjt:  LFVVLVYFIMFCIITIIIRYLTPTDQARDLDIEAGQQVRVGHQWRHFVWYETERARGQAAVQR--PHIAKEEEASSSAIVTAAFKDLSKT-GVEGDSECA

Query:  ICMEGFEEEELCRVVECCNNFFHKDCVDRWLKIKTCCPLCRSLVHVLSRN
        IC+EGFEEEE+C V++ C + FHK C+D+WL+I + CPLCR L+ V+S N
Subjt:  ICMEGFEEEELCRVVECCNNFFHKDCVDRWLKIKTCCPLCRSLVHVLSRN

A0A6J1I5C3 RING-type E3 ubiquitin transferase4.6e-1539.47Show/hide
Query:  LFVVLVYFIMFCIITIIIRYLTPTDQARDLDIEAGQQVRVGHQWRHFVWYETERARGQAAV----QRPHIAKEEEASSSAIVTAAFKDLSKT-GVEGDSE
        + V L  F+  C     + Y     Q R LD+E     +  H  R F  +  E  R Q ++     RP+ A+EE A  S +   A++D+  T   + D  
Subjt:  LFVVLVYFIMFCIITIIIRYLTPTDQARDLDIEAGQQVRVGHQWRHFVWYETERARGQAAV----QRPHIAKEEEASSSAIVTAAFKDLSKT-GVEGDSE

Query:  CAICMEGFEEEELCRVVECCNNFFHKDCVDRWLKIKTCCPLCRSLVHVLSRN
        CAIC+EGFEEEE+C VV+ C++ FHK C+D+WL I + CPLCR LV V+S N
Subjt:  CAICMEGFEEEELCRVVECCNNFFHKDCVDRWLKIKTCCPLCRSLVHVLSRN

SwissProt top hitse value%identityAlignment
Q8L9T5 RING-H2 finger protein ATL24.8e-0950.98Show/hide
Query:  ECAICMEGFEEEELCRVVECCNNFFHKDCVDRWLKIKTCCPLCRSLVHVLS
        ECA+C+  FEE E  RV+  C + FH DC+D W    + CPLCRSLV  L+
Subjt:  ECAICMEGFEEEELCRVVECCNNFFHKDCVDRWLKIKTCCPLCRSLVHVLS

Q8W571 RING-H2 finger protein ATL328.2e-0944.44Show/hide
Query:  SKTGVEGDSECAICMEGFEEEELCRVVECCNNFFHKDCVDRWLKIKTCCPLCRSLVHVLSRNP
        SK G + D ECAIC+   E+ E  R++  CN+ FH DC+D WL     CP+CRS +   S  P
Subjt:  SKTGVEGDSECAICMEGFEEEELCRVVECCNNFFHKDCVDRWLKIKTCCPLCRSLVHVLSRNP

Q9LF64 RING-H2 finger protein ATL521.1e-0843.33Show/hide
Query:  FKDLSKTGVEGDSECAICMEGFEEEELCRVVECCNNFFHKDCVDRWLKIKTCCPLCRSLV
        +K  S  G    S+C++C+  FEE E  R++  CN+ FH  C+D WLK  + CPLCR+ V
Subjt:  FKDLSKTGVEGDSECAICMEGFEEEELCRVVECCNNFFHKDCVDRWLKIKTCCPLCRSLV

Q9LX93 E3 ubiquitin-protein ligase RING13.7e-0935.96Show/hide
Query:  QRPHIAKEEEASSSAIVTAAFKDLSKTGVEGDSECAICMEGFEEEELCRVVECCNNFFHKDCVDRWLKIKTCCPLCRSLVHVLSRNPHQ
        Q P +     A +S I    FK     G+   +EC++C+  FEE+E  R++  C++ FH +C+D WL     CPLCR+ V +++  PHQ
Subjt:  QRPHIAKEEEASSSAIVTAAFKDLSKTGVEGDSECAICMEGFEEEELCRVVECCNNFFHKDCVDRWLKIKTCCPLCRSLVHVLSRNPHQ

Q9SRM0 RING-H2 finger protein ATL661.6e-0949.06Show/hide
Query:  EGDSECAICMEGFEEEELCRVVECCNNFFHKDCVDRWLKIKTCCPLCRSLVHV
        E + EC IC+ GFEE E  +V+  C++ +H +CVDRWLK ++ CPLCR  + V
Subjt:  EGDSECAICMEGFEEEELCRVVECCNNFFHKDCVDRWLKIKTCCPLCRSLVHV

Arabidopsis top hitse value%identityAlignment
AT3G11110.1 RING/U-box superfamily protein1.2e-1049.06Show/hide
Query:  EGDSECAICMEGFEEEELCRVVECCNNFFHKDCVDRWLKIKTCCPLCRSLVHV
        E + EC IC+ GFEE E  +V+  C++ +H +CVDRWLK ++ CPLCR  + V
Subjt:  EGDSECAICMEGFEEEELCRVVECCNNFFHKDCVDRWLKIKTCCPLCRSLVHV

AT3G16720.1 TOXICOS EN LEVADURA 23.4e-1050.98Show/hide
Query:  ECAICMEGFEEEELCRVVECCNNFFHKDCVDRWLKIKTCCPLCRSLVHVLS
        ECA+C+  FEE E  RV+  C + FH DC+D W    + CPLCRSLV  L+
Subjt:  ECAICMEGFEEEELCRVVECCNNFFHKDCVDRWLKIKTCCPLCRSLVHVLS

AT4G40070.1 RING/U-box superfamily protein5.8e-1044.44Show/hide
Query:  SKTGVEGDSECAICMEGFEEEELCRVVECCNNFFHKDCVDRWLKIKTCCPLCRSLVHVLSRNP
        SK G + D ECAIC+   E+ E  R++  CN+ FH DC+D WL     CP+CRS +   S  P
Subjt:  SKTGVEGDSECAICMEGFEEEELCRVVECCNNFFHKDCVDRWLKIKTCCPLCRSLVHVLSRNP

AT5G10380.1 RING/U-box superfamily protein2.6e-1035.96Show/hide
Query:  QRPHIAKEEEASSSAIVTAAFKDLSKTGVEGDSECAICMEGFEEEELCRVVECCNNFFHKDCVDRWLKIKTCCPLCRSLVHVLSRNPHQ
        Q P +     A +S I    FK     G+   +EC++C+  FEE+E  R++  C++ FH +C+D WL     CPLCR+ V +++  PHQ
Subjt:  QRPHIAKEEEASSSAIVTAAFKDLSKTGVEGDSECAICMEGFEEEELCRVVECCNNFFHKDCVDRWLKIKTCCPLCRSLVHVLSRNPHQ

AT5G17600.1 RING/U-box superfamily protein7.6e-1043.33Show/hide
Query:  FKDLSKTGVEGDSECAICMEGFEEEELCRVVECCNNFFHKDCVDRWLKIKTCCPLCRSLV
        +K  S  G    S+C++C+  FEE E  R++  CN+ FH  C+D WLK  + CPLCR+ V
Subjt:  FKDLSKTGVEGDSECAICMEGFEEEELCRVVECCNNFFHKDCVDRWLKIKTCCPLCRSLV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATCATTCCATTATTTTTCAACTATCTACAAATTTCAGCTTCTCCAACGACGACGATGATTAGTTCCTTCGTTTCCAAGCACCCGGGTTTATCCTTTTTTCTCTTCGT
CGTTTTGGTTTATTTCATCATGTTTTGTATTATAACAATAATTATCCGCTACCTGACGCCGACTGATCAAGCAAGAGACCTCGATATCGAGGCCGGCCAGCAAGTCCGAG
TAGGCCATCAGTGGCGACATTTTGTTTGGTATGAGACTGAAAGGGCACGAGGACAGGCGGCGGTGCAACGCCCGCACATTGCGAAGGAAGAAGAAGCCTCCTCCTCCGCC
ATTGTGACGGCCGCTTTCAAGGACTTATCGAAGACGGGAGTGGAAGGCGATTCGGAGTGTGCGATATGCATGGAGGGATTTGAGGAGGAAGAGCTTTGTAGAGTTGTTGA
GTGCTGCAACAACTTTTTTCATAAGGATTGTGTTGATCGTTGGCTCAAGATTAAGACCTGTTGCCCCTTGTGCCGATCTTTGGTTCATGTTCTATCTCGAAATCCCCATC
AAAATTAA
mRNA sequenceShow/hide mRNA sequence
ATGATCATTCCATTATTTTTCAACTATCTACAAATTTCAGCTTCTCCAACGACGACGATGATTAGTTCCTTCGTTTCCAAGCACCCGGGTTTATCCTTTTTTCTCTTCGT
CGTTTTGGTTTATTTCATCATGTTTTGTATTATAACAATAATTATCCGCTACCTGACGCCGACTGATCAAGCAAGAGACCTCGATATCGAGGCCGGCCAGCAAGTCCGAG
TAGGCCATCAGTGGCGACATTTTGTTTGGTATGAGACTGAAAGGGCACGAGGACAGGCGGCGGTGCAACGCCCGCACATTGCGAAGGAAGAAGAAGCCTCCTCCTCCGCC
ATTGTGACGGCCGCTTTCAAGGACTTATCGAAGACGGGAGTGGAAGGCGATTCGGAGTGTGCGATATGCATGGAGGGATTTGAGGAGGAAGAGCTTTGTAGAGTTGTTGA
GTGCTGCAACAACTTTTTTCATAAGGATTGTGTTGATCGTTGGCTCAAGATTAAGACCTGTTGCCCCTTGTGCCGATCTTTGGTTCATGTTCTATCTCGAAATCCCCATC
AAAATTAA
Protein sequenceShow/hide protein sequence
MIIPLFFNYLQISASPTTTMISSFVSKHPGLSFFLFVVLVYFIMFCIITIIIRYLTPTDQARDLDIEAGQQVRVGHQWRHFVWYETERARGQAAVQRPHIAKEEEASSSA
IVTAAFKDLSKTGVEGDSECAICMEGFEEEELCRVVECCNNFFHKDCVDRWLKIKTCCPLCRSLVHVLSRNPHQN