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Sed0012934 (gene) of Chayote v1 genome

Gene IDSed0012934
OrganismSechium edule (Chayote v1)
DescriptionType B response regulator
Genome locationLG07:3846419..3847263
RNA-Seq ExpressionSed0012934
SyntenySed0012934
Gene Ontology termsNA
InterPro domainsIPR009057 - Homeobox-like domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0046668.1 type B response regulator [Cucumis melo var. makuwa]3.6e-0532.61Show/hide
Query:  LSTNLYRVSGGDLTNTIDGGRVQTSVAAAEGQGRRDVGADLTLAIVDAESTKRFTWTPEYHTIFLEAYHAFPLNEQNPSNILEYMVNRGINGLTRDIVKN
        L  ++ R  GG   +T DGG +         Q R  +G   T          RF WTPE H IF+EA +   L    P  ILEYM N G+  +TR IV +
Subjt:  LSTNLYRVSGGDLTNTIDGGRVQTSVAAAEGQGRRDVGADLTLAIVDAESTKRFTWTPEYHTIFLEAYHAFPLNEQNPSNILEYMVNRGINGLTRDIVKN

Query:  YLQKHKRRVK---AEAEAARKILNHAIDLTAEGNDTME
        +LQK++  +K    E + A ++    I   A      E
Subjt:  YLQKHKRRVK---AEAEAARKILNHAIDLTAEGNDTME

TrEMBL top hitse value%identityAlignment
A0A0A0KB26 Uncharacterized protein1.5e-0450.98Show/hide
Query:  RFTWTPEYHTIFLEAYHAFPLNEQNPSNILEYMVNRGINGLTRDIVKNYLQ
        RF WT EYH IF+EA     L    P  ILEYM+N G+  +TR IV ++LQ
Subjt:  RFTWTPEYHTIFLEAYHAFPLNEQNPSNILEYMVNRGINGLTRDIVKNYLQ

A0A5D3D1X5 Type B response regulator1.8e-0532.61Show/hide
Query:  LSTNLYRVSGGDLTNTIDGGRVQTSVAAAEGQGRRDVGADLTLAIVDAESTKRFTWTPEYHTIFLEAYHAFPLNEQNPSNILEYMVNRGINGLTRDIVKN
        L  ++ R  GG   +T DGG +         Q R  +G   T          RF WTPE H IF+EA +   L    P  ILEYM N G+  +TR IV +
Subjt:  LSTNLYRVSGGDLTNTIDGGRVQTSVAAAEGQGRRDVGADLTLAIVDAESTKRFTWTPEYHTIFLEAYHAFPLNEQNPSNILEYMVNRGINGLTRDIVKN

Query:  YLQKHKRRVK---AEAEAARKILNHAIDLTAEGNDTME
        +LQK++  +K    E + A ++    I   A      E
Subjt:  YLQKHKRRVK---AEAEAARKILNHAIDLTAEGNDTME

A0A7J7CBY8 Putative Response regulator 25.7e-0440.79Show/hide
Query:  LAIVDAESTKRFTWTPEYHTIFLEAYHAFPLNEQNPSNILEYMVNRGINGLTRDIVKNYLQKHKRRVKAEAEAARK
        LAIV++  T    WT E H  FLEA +   ++  +P NILEYM    + GLTR+ + ++LQKH  ++K E    +K
Subjt:  LAIVDAESTKRFTWTPEYHTIFLEAYHAFPLNEQNPSNILEYMVNRGINGLTRDIVKNYLQKHKRRVKAEAEAARK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTTCGCCATATGCGTTCAATGTTCTTGTAGTCGACAAGGATGAGAATATCAGGGAAGAAGTGCAGAGTATTCTCTTGAGCACCAACCTATATCGAGTGAGTGGAGG
AGACCTCACGAATACAATCGATGGAGGACGAGTTCAAACTAGTGTTGCAGCAGCGGAAGGTCAAGGCCGCAGGGATGTTGGAGCGGATCTTACCTTGGCCATCGTAGATG
CAGAGTCTACTAAGCGGTTTACTTGGACTCCAGAATATCATACTATATTTCTCGAGGCCTATCACGCCTTTCCTCTCAATGAACAAAACCCTAGCAATATCCTAGAATAT
ATGGTGAATCGTGGCATCAACGGTCTTACGCGTGATATTGTTAAGAACTACCTCCAGAAACACAAAAGAAGAGTCAAAGCTGAAGCTGAAGCTGCTAGAAAAATACTCAA
CCACGCAATTGACCTCACGGCAGAAGGGAATGACACCATGGAGGCAAGGAGATCAATGATGTAG
mRNA sequenceShow/hide mRNA sequence
ATGGCTTCGCCATATGCGTTCAATGTTCTTGTAGTCGACAAGGATGAGAATATCAGGGAAGAAGTGCAGAGTATTCTCTTGAGCACCAACCTATATCGAGTGAGTGGAGG
AGACCTCACGAATACAATCGATGGAGGACGAGTTCAAACTAGTGTTGCAGCAGCGGAAGGTCAAGGCCGCAGGGATGTTGGAGCGGATCTTACCTTGGCCATCGTAGATG
CAGAGTCTACTAAGCGGTTTACTTGGACTCCAGAATATCATACTATATTTCTCGAGGCCTATCACGCCTTTCCTCTCAATGAACAAAACCCTAGCAATATCCTAGAATAT
ATGGTGAATCGTGGCATCAACGGTCTTACGCGTGATATTGTTAAGAACTACCTCCAGAAACACAAAAGAAGAGTCAAAGCTGAAGCTGAAGCTGCTAGAAAAATACTCAA
CCACGCAATTGACCTCACGGCAGAAGGGAATGACACCATGGAGGCAAGGAGATCAATGATGTAG
Protein sequenceShow/hide protein sequence
MASPYAFNVLVVDKDENIREEVQSILLSTNLYRVSGGDLTNTIDGGRVQTSVAAAEGQGRRDVGADLTLAIVDAESTKRFTWTPEYHTIFLEAYHAFPLNEQNPSNILEY
MVNRGINGLTRDIVKNYLQKHKRRVKAEAEAARKILNHAIDLTAEGNDTMEARRSMM