; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Sed0013021 (gene) of Chayote v1 genome

Gene IDSed0013021
OrganismSechium edule (Chayote v1)
DescriptionNucleic acid-binding, OB-fold-like protein
Genome locationLG03:43196294..43200632
RNA-Seq ExpressionSed0013021
SyntenySed0013021
Gene Ontology termsNA
InterPro domainsIPR012340 - Nucleic acid-binding, OB-fold


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004142984.1 uncharacterized protein At4g28440 [Cucumis sativus]3.2e-6392.03Show/hide
Query:  MAESKPGLRKPVFTKVDQLRPGTSGHTLSVKVVNTKMVLQKGRTDGTQSRQMRIAECLVGDETGMVIYTARNDQVDLMKEGSTVTLRNAKIDMFKGSMRL
        MAESKPGLRKPVFTKVDQLRPGTSGHTL+VKVVNTKMVLQKGR DG Q+RQMRIAECLVGDETGM+I+TARNDQVDLMKEG+T+TLRNAKIDMFKGSMRL
Subjt:  MAESKPGLRKPVFTKVDQLRPGTSGHTLSVKVVNTKMVLQKGRTDGTQSRQMRIAECLVGDETGMVIYTARNDQVDLMKEGSTVTLRNAKIDMFKGSMRL

Query:  AVDRWGRVEAATEPASFTVKEDNNLSLIEYELVNVVEE
        AVDRWGRVE  TEPA+FTVKEDNNLSLIEYELVNVVEE
Subjt:  AVDRWGRVEAATEPASFTVKEDNNLSLIEYELVNVVEE

XP_022131585.1 uncharacterized protein At4g28440-like [Momordica charantia]2.7e-6291.3Show/hide
Query:  MAESKPGLRKPVFTKVDQLRPGTSGHTLSVKVVNTKMVLQKGRTDGTQSRQMRIAECLVGDETGMVIYTARNDQVDLMKEGSTVTLRNAKIDMFKGSMRL
        MAESKPGLRKPVFTKVDQLRPGTSGHTL+VKVVNTKMVLQKGR DG Q RQMRIAECLVGDETGM+I+TARNDQVD+MKEG+T+ LRNAKIDMFKGSMRL
Subjt:  MAESKPGLRKPVFTKVDQLRPGTSGHTLSVKVVNTKMVLQKGRTDGTQSRQMRIAECLVGDETGMVIYTARNDQVDLMKEGSTVTLRNAKIDMFKGSMRL

Query:  AVDRWGRVEAATEPASFTVKEDNNLSLIEYELVNVVEE
        AVDRWGRVE  TEPASFTVKEDNNLSLIEYELVNVVEE
Subjt:  AVDRWGRVEAATEPASFTVKEDNNLSLIEYELVNVVEE

XP_022951207.1 uncharacterized protein At4g28440-like [Cucurbita moschata]2.1e-6291.3Show/hide
Query:  MAESKPGLRKPVFTKVDQLRPGTSGHTLSVKVVNTKMVLQKGRTDGTQSRQMRIAECLVGDETGMVIYTARNDQVDLMKEGSTVTLRNAKIDMFKGSMRL
        MAESKPGLRKPVFTKVDQLRPGTSGHTL+VKVVNTKMVLQKGR DG Q+RQMRIAECLVGDETGM+I+TARNDQVDLMKEG+T+ LRNAKIDMFKGSMRL
Subjt:  MAESKPGLRKPVFTKVDQLRPGTSGHTLSVKVVNTKMVLQKGRTDGTQSRQMRIAECLVGDETGMVIYTARNDQVDLMKEGSTVTLRNAKIDMFKGSMRL

Query:  AVDRWGRVEAATEPASFTVKEDNNLSLIEYELVNVVEE
        AVDRWGRVE  TEPASFTVKE+NNLSLIEYELVNVVEE
Subjt:  AVDRWGRVEAATEPASFTVKEDNNLSLIEYELVNVVEE

XP_022961781.1 uncharacterized protein At4g28440-like [Cucurbita moschata]2.7e-6291.3Show/hide
Query:  MAESKPGLRKPVFTKVDQLRPGTSGHTLSVKVVNTKMVLQKGRTDGTQSRQMRIAECLVGDETGMVIYTARNDQVDLMKEGSTVTLRNAKIDMFKGSMRL
        MAESKPGLRKPVFTKVDQLRPGTSGHTL VKVVN KMVLQKGR DG Q+RQMRIAECLVGDETGM+I+TARNDQVDLMKEG+T+TLRNAKIDMFKGSMRL
Subjt:  MAESKPGLRKPVFTKVDQLRPGTSGHTLSVKVVNTKMVLQKGRTDGTQSRQMRIAECLVGDETGMVIYTARNDQVDLMKEGSTVTLRNAKIDMFKGSMRL

Query:  AVDRWGRVEAATEPASFTVKEDNNLSLIEYELVNVVEE
        AVDRWGRVE  TEPA+FTVKEDNNLSLIEYELVNVVEE
Subjt:  AVDRWGRVEAATEPASFTVKEDNNLSLIEYELVNVVEE

XP_038883981.1 uncharacterized protein At4g28440 [Benincasa hispida]4.1e-6391.3Show/hide
Query:  MAESKPGLRKPVFTKVDQLRPGTSGHTLSVKVVNTKMVLQKGRTDGTQSRQMRIAECLVGDETGMVIYTARNDQVDLMKEGSTVTLRNAKIDMFKGSMRL
        MAESKPGLRKPVFTK+DQLRPGTSGHTL+VKVVNTKMVLQKGR DG Q+RQMRIAECLVGDETGM+I+TARNDQVDLMKEG+T+TLRNAKIDMFKGSMRL
Subjt:  MAESKPGLRKPVFTKVDQLRPGTSGHTLSVKVVNTKMVLQKGRTDGTQSRQMRIAECLVGDETGMVIYTARNDQVDLMKEGSTVTLRNAKIDMFKGSMRL

Query:  AVDRWGRVEAATEPASFTVKEDNNLSLIEYELVNVVEE
        AVDRWGRVE  TEPA+FTVKEDNNLSLIEYELVNVVEE
Subjt:  AVDRWGRVEAATEPASFTVKEDNNLSLIEYELVNVVEE

TrEMBL top hitse value%identityAlignment
A0A0A0LNA1 Uncharacterized protein1.5e-6392.03Show/hide
Query:  MAESKPGLRKPVFTKVDQLRPGTSGHTLSVKVVNTKMVLQKGRTDGTQSRQMRIAECLVGDETGMVIYTARNDQVDLMKEGSTVTLRNAKIDMFKGSMRL
        MAESKPGLRKPVFTKVDQLRPGTSGHTL+VKVVNTKMVLQKGR DG Q+RQMRIAECLVGDETGM+I+TARNDQVDLMKEG+T+TLRNAKIDMFKGSMRL
Subjt:  MAESKPGLRKPVFTKVDQLRPGTSGHTLSVKVVNTKMVLQKGRTDGTQSRQMRIAECLVGDETGMVIYTARNDQVDLMKEGSTVTLRNAKIDMFKGSMRL

Query:  AVDRWGRVEAATEPASFTVKEDNNLSLIEYELVNVVEE
        AVDRWGRVE  TEPA+FTVKEDNNLSLIEYELVNVVEE
Subjt:  AVDRWGRVEAATEPASFTVKEDNNLSLIEYELVNVVEE

A0A1S3BA24 uncharacterized protein At4g28440 isoform X11.5e-6392.03Show/hide
Query:  MAESKPGLRKPVFTKVDQLRPGTSGHTLSVKVVNTKMVLQKGRTDGTQSRQMRIAECLVGDETGMVIYTARNDQVDLMKEGSTVTLRNAKIDMFKGSMRL
        MAESKPGLRKPVFTKVDQLRPGTSGHTL+VKVVNTKMVLQKGR DG Q+RQMRIAECLVGDETGM+I+TARNDQVDLMKEG+T+TLRNAKIDMFKGSMRL
Subjt:  MAESKPGLRKPVFTKVDQLRPGTSGHTLSVKVVNTKMVLQKGRTDGTQSRQMRIAECLVGDETGMVIYTARNDQVDLMKEGSTVTLRNAKIDMFKGSMRL

Query:  AVDRWGRVEAATEPASFTVKEDNNLSLIEYELVNVVEE
        AVDRWGRVE  TEPA+FTVKEDNNLSLIEYELVNVVEE
Subjt:  AVDRWGRVEAATEPASFTVKEDNNLSLIEYELVNVVEE

A0A5A7V0K6 Nucleic acid-binding protein1.5e-6392.03Show/hide
Query:  MAESKPGLRKPVFTKVDQLRPGTSGHTLSVKVVNTKMVLQKGRTDGTQSRQMRIAECLVGDETGMVIYTARNDQVDLMKEGSTVTLRNAKIDMFKGSMRL
        MAESKPGLRKPVFTKVDQLRPGTSGHTL+VKVVNTKMVLQKGR DG Q+RQMRIAECLVGDETGM+I+TARNDQVDLMKEG+T+TLRNAKIDMFKGSMRL
Subjt:  MAESKPGLRKPVFTKVDQLRPGTSGHTLSVKVVNTKMVLQKGRTDGTQSRQMRIAECLVGDETGMVIYTARNDQVDLMKEGSTVTLRNAKIDMFKGSMRL

Query:  AVDRWGRVEAATEPASFTVKEDNNLSLIEYELVNVVEE
        AVDRWGRVE  TEPA+FTVKEDNNLSLIEYELVNVVEE
Subjt:  AVDRWGRVEAATEPASFTVKEDNNLSLIEYELVNVVEE

A0A6J1GH14 uncharacterized protein At4g28440-like9.9e-6391.3Show/hide
Query:  MAESKPGLRKPVFTKVDQLRPGTSGHTLSVKVVNTKMVLQKGRTDGTQSRQMRIAECLVGDETGMVIYTARNDQVDLMKEGSTVTLRNAKIDMFKGSMRL
        MAESKPGLRKPVFTKVDQLRPGTSGHTL+VKVVNTKMVLQKGR DG Q+RQMRIAECLVGDETGM+I+TARNDQVDLMKEG+T+ LRNAKIDMFKGSMRL
Subjt:  MAESKPGLRKPVFTKVDQLRPGTSGHTLSVKVVNTKMVLQKGRTDGTQSRQMRIAECLVGDETGMVIYTARNDQVDLMKEGSTVTLRNAKIDMFKGSMRL

Query:  AVDRWGRVEAATEPASFTVKEDNNLSLIEYELVNVVEE
        AVDRWGRVE  TEPASFTVKE+NNLSLIEYELVNVVEE
Subjt:  AVDRWGRVEAATEPASFTVKEDNNLSLIEYELVNVVEE

A0A6J1KS21 uncharacterized protein At4g28440-like9.9e-6391.3Show/hide
Query:  MAESKPGLRKPVFTKVDQLRPGTSGHTLSVKVVNTKMVLQKGRTDGTQSRQMRIAECLVGDETGMVIYTARNDQVDLMKEGSTVTLRNAKIDMFKGSMRL
        MAESKPGLRKPVFTKVDQLRPGTSGHTL+VKVVNTKMVLQKGR DG Q+RQMRIAECLVGDETGM+I+TARNDQVDLMKEG+T+ LRNAKIDMFKGSMRL
Subjt:  MAESKPGLRKPVFTKVDQLRPGTSGHTLSVKVVNTKMVLQKGRTDGTQSRQMRIAECLVGDETGMVIYTARNDQVDLMKEGSTVTLRNAKIDMFKGSMRL

Query:  AVDRWGRVEAATEPASFTVKEDNNLSLIEYELVNVVEE
        AVDRWGRVE  TEPASFTVKE+NNLSLIEYELVNVVEE
Subjt:  AVDRWGRVEAATEPASFTVKEDNNLSLIEYELVNVVEE

SwissProt top hitse value%identityAlignment
O49453 Uncharacterized protein At4g284401.2e-4165.41Show/hide
Query:  RKPVFTKVDQLRPGTSGHTLSVKVVNTKMVL---QKGRTDGTQSR---QMRIAECLVGDETGMVIYTARNDQVDLMKEGSTVTLRNAKIDMFKGSMRLAV
        RKPVF KV+QL+PGT+GHTL+VKV+   +V+   +K R   + SR     RI ECL+GDETG +++TARNDQVDLMK G+TV LRN++IDMFKG+MRL V
Subjt:  RKPVFTKVDQLRPGTSGHTLSVKVVNTKMVL---QKGRTDGTQSR---QMRIAECLVGDETGMVIYTARNDQVDLMKEGSTVTLRNAKIDMFKGSMRLAV

Query:  DRWGRVEAATEPASFTVKEDNNLSLIEYELVNV
        D+WGR+E AT  ASFTVKEDNNLSL+EYEL+NV
Subjt:  DRWGRVEAATEPASFTVKEDNNLSLIEYELVNV

Arabidopsis top hitse value%identityAlignment
AT1G10590.1 Nucleic acid-binding, OB-fold-like protein1.8e-5678.83Show/hide
Query:  MAESKPGLRKPVFTKVDQLRPGTSGHTLSVKVVNTKMVLQK--GRTDGTQSRQMRIAECLVGDETGMVIYTARNDQVDLMKEGSTVTLRNAKIDMFKGSM
        MAE+   LRKPVFTKV++LRPGT+GH+L+VKVVNTKMV+Q+  GR  G QSRQMRIAECLVGDETG++I+TARNDQVD+MKEGS VTLRNAKIDM+KGSM
Subjt:  MAESKPGLRKPVFTKVDQLRPGTSGHTLSVKVVNTKMVLQK--GRTDGTQSRQMRIAECLVGDETGMVIYTARNDQVDLMKEGSTVTLRNAKIDMFKGSM

Query:  RLAVDRWGRVEAATEPASFTVKEDNNLSLIEYELVNV
        RLAVDRWGRVE A EP   TVK+DNNLSLIEYELV+V
Subjt:  RLAVDRWGRVEAATEPASFTVKEDNNLSLIEYELVNV

AT1G10590.2 Nucleic acid-binding, OB-fold-like protein1.8e-5678.83Show/hide
Query:  MAESKPGLRKPVFTKVDQLRPGTSGHTLSVKVVNTKMVLQK--GRTDGTQSRQMRIAECLVGDETGMVIYTARNDQVDLMKEGSTVTLRNAKIDMFKGSM
        MAE+   LRKPVFTKV++LRPGT+GH+L+VKVVNTKMV+Q+  GR  G QSRQMRIAECLVGDETG++I+TARNDQVD+MKEGS VTLRNAKIDM+KGSM
Subjt:  MAESKPGLRKPVFTKVDQLRPGTSGHTLSVKVVNTKMVLQK--GRTDGTQSRQMRIAECLVGDETGMVIYTARNDQVDLMKEGSTVTLRNAKIDMFKGSM

Query:  RLAVDRWGRVEAATEPASFTVKEDNNLSLIEYELVNV
        RLAVDRWGRVE A EP   TVK+DNNLSLIEYELV+V
Subjt:  RLAVDRWGRVEAATEPASFTVKEDNNLSLIEYELVNV

AT1G10590.3 Nucleic acid-binding, OB-fold-like protein1.8e-5678.83Show/hide
Query:  MAESKPGLRKPVFTKVDQLRPGTSGHTLSVKVVNTKMVLQK--GRTDGTQSRQMRIAECLVGDETGMVIYTARNDQVDLMKEGSTVTLRNAKIDMFKGSM
        MAE+   LRKPVFTKV++LRPGT+GH+L+VKVVNTKMV+Q+  GR  G QSRQMRIAECLVGDETG++I+TARNDQVD+MKEGS VTLRNAKIDM+KGSM
Subjt:  MAESKPGLRKPVFTKVDQLRPGTSGHTLSVKVVNTKMVLQK--GRTDGTQSRQMRIAECLVGDETGMVIYTARNDQVDLMKEGSTVTLRNAKIDMFKGSM

Query:  RLAVDRWGRVEAATEPASFTVKEDNNLSLIEYELVNV
        RLAVDRWGRVE A EP   TVK+DNNLSLIEYELV+V
Subjt:  RLAVDRWGRVEAATEPASFTVKEDNNLSLIEYELVNV

AT1G23750.1 Nucleic acid-binding, OB-fold-like protein8.6e-5980.43Show/hide
Query:  MAES-KPGLRKPVFTKVDQLRPGTSGHTLSVKVVNTKMVLQKGRTDGTQSRQMRIAECLVGDETGMVIYTARNDQVDLMKEGSTVTLRNAKIDMFKGSMR
        MA+S K GL+KP FTKVDQLRPGTSGH ++VK+V+TKMVLQKGR DG Q+RQ+RI+EC+VGDETG++++TARNDQVDLMKEGSTVTLRNAKIDM+KGSMR
Subjt:  MAES-KPGLRKPVFTKVDQLRPGTSGHTLSVKVVNTKMVLQKGRTDGTQSRQMRIAECLVGDETGMVIYTARNDQVDLMKEGSTVTLRNAKIDMFKGSMR

Query:  LAVDRWGRVEAATEPASFTVKEDNNLSLIEYELVNVVE
        LAVD+WGRVE  TEPASF VKED N+SLIEYELVNVVE
Subjt:  LAVDRWGRVEAATEPASFTVKEDNNLSLIEYELVNVVE

AT2G33845.1 Nucleic acid-binding, OB-fold-like protein5.2e-4873.28Show/hide
Query:  RKPVFTKVDQLRPGTSGHTLSVKVVNTKMVLQK-GRTDGTQSRQMRIAECLVGDETGMVIYTARNDQVDLMKEGSTVTLRNAKIDMFKGSMRLAVDRWGR
        +KPVF KVDQL+PGTSGHTL+VKVV+   V QK G    +  R  RI+ECLVGDET  +++TARNDQV+LMK G+TV LRNAKIDMFKGSMRLAVD+WGR
Subjt:  RKPVFTKVDQLRPGTSGHTLSVKVVNTKMVLQK-GRTDGTQSRQMRIAECLVGDETGMVIYTARNDQVDLMKEGSTVTLRNAKIDMFKGSMRLAVDRWGR

Query:  VEAATEPASFTVKEDNNLSLIEYELVNVVEE
        +E ATEPA  TVKEDNNLSL+EYELVNVVEE
Subjt:  VEAATEPASFTVKEDNNLSLIEYELVNVVEE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCAGAATCAAAACCTGGACTGAGGAAACCAGTGTTTACCAAGGTTGACCAACTTCGGCCTGGCACTAGTGGGCACACTCTTTCAGTCAAGGTTGTGAATACTAAGAT
GGTGTTGCAGAAGGGTCGTACTGATGGTACTCAATCTCGTCAGATGCGAATTGCTGAATGCTTGGTGGGTGATGAGACTGGAATGGTCATATATACTGCCAGAAATGATC
AAGTTGACTTGATGAAAGAAGGTAGCACTGTAACCCTGCGCAACGCTAAGATAGACATGTTTAAAGGATCAATGAGACTAGCTGTGGACAGGTGGGGCCGAGTTGAAGCG
GCTACGGAGCCTGCCAGTTTTACTGTTAAGGAAGATAACAATCTTTCACTCATCGAATATGAACTCGTGAATGTGGTGGAAGAGTGA
mRNA sequenceShow/hide mRNA sequence
GTGGTCGGTCGCGATTAAAGTCTTCTGGCGATCAATCATCGACGGCTGTTATTTCATAGCAACTTTATTTGTTTCCTCGAAGCCAGAGTTTGACGGCTGCATTTCTCAAA
TCAGATCGGCCTCCTTTTTGCTCTTCGTCTTTGCCTCTTCCACTCGCAAAAGGCCTTCAAGGAAATGGCAGAATCAAAACCTGGACTGAGGAAACCAGTGTTTACCAAGG
TTGACCAACTTCGGCCTGGCACTAGTGGGCACACTCTTTCAGTCAAGGTTGTGAATACTAAGATGGTGTTGCAGAAGGGTCGTACTGATGGTACTCAATCTCGTCAGATG
CGAATTGCTGAATGCTTGGTGGGTGATGAGACTGGAATGGTCATATATACTGCCAGAAATGATCAAGTTGACTTGATGAAAGAAGGTAGCACTGTAACCCTGCGCAACGC
TAAGATAGACATGTTTAAAGGATCAATGAGACTAGCTGTGGACAGGTGGGGCCGAGTTGAAGCGGCTACGGAGCCTGCCAGTTTTACTGTTAAGGAAGATAACAATCTTT
CACTCATCGAATATGAACTCGTGAATGTGGTGGAAGAGTGAACTTTCTGAACTTTCTGGCTTCAACCTGACCATAAAATAAAGCTACAAAATATTACAAGTTTCCTTTGG
GGGGTACCTAAAATGCTTGCAGAAGTTCATTATTAGGAAGTAGAATCCTAGAAGCCAGTAGTACGAAAGTTGATTTTCATCCCTGCAGGTTATTGGTGGAACCGTGTTGG
GATCCACAGAGATGTGGGTAAATTGCTGTCAGTTCATGGGAGAAGGCTTATCTGGCTTTTTTTTTTTTATAAAAAAGAAATATTATTTACTTTTCCTTTGTCTAGTATTT
TATTGCTTATGAACACAGTTTATAATGTTCTTGAACTATCATCAGATGACAAGACTAGCACCCTGCTCTGTTGGAAACTGATGCTTTTCTTTATAATTAAGGTTCGTGCT
ATCCTTAACTGCTTTTGAGTTTCAAATTCAATGCTTAATTTTGAAAGGAAAAAGAAAAAGAAAAAAACAAGTTGGCATTGTTCGTCTTTTGCTCATGATCCATGTCTCCA
GTTTTAAGATTGACTTTCGCTATGCAGGTGTAC
Protein sequenceShow/hide protein sequence
MAESKPGLRKPVFTKVDQLRPGTSGHTLSVKVVNTKMVLQKGRTDGTQSRQMRIAECLVGDETGMVIYTARNDQVDLMKEGSTVTLRNAKIDMFKGSMRLAVDRWGRVEA
ATEPASFTVKEDNNLSLIEYELVNVVEE