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Sed0013042 (gene) of Chayote v1 genome

Gene IDSed0013042
OrganismSechium edule (Chayote v1)
DescriptionZinc finger protein
Genome locationLG03:8446999..8447428
RNA-Seq ExpressionSed0013042
SyntenySed0013042
Gene Ontology termsGO:0003700 - DNA-binding transcription factor activity (molecular function)
InterPro domainsIPR013087 - Zinc finger C2H2-type
IPR044653 - C2H2-type zinc-finger protein AZF1/2/3-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
BAA19113.1 tapetum-specific zinc finger protein 1 [Petunia x hybrida]2.5e-0939.32Show/hide
Query:  CNLCGSEFKSEKALCGHMRCHPDRSWRGLKPPAASPAGVADGISDPMAVADCKDNRLSVPRWSATDKRGRKCVKKRKMTEERELTCSEESDQRGLIRRML
        C++CG  F S K+L GHMR HP+R+WRG++PPA +        S+ +A A  K   LSVP WS   KRGRK             T +E S    L  R  
Subjt:  CNLCGSEFKSEKALCGHMRCHPDRSWRGLKPPAASPAGVADGISDPMAVADCKDNRLSVPRWSATDKRGRKCVKKRKMTEERELTCSEESDQRGLIRRML

Query:  DFDLNELPQVDDNDDEE
         FD        + DDEE
Subjt:  DFDLNELPQVDDNDDEE

KAE9456519.1 hypothetical protein C3L33_11473, partial [Rhododendron williamsianum]1.7e-1048.05Show/hide
Query:  SRDKCNLCGSEFKSEKALCGHMRCHPDRSWRGLKPPAASPAGVADGISDPMAVADCKDNRLSVPRWSATDKRGRKCV
        +R  C+LCG  F S K+L GHMRCHP+R WRG++PP      VA   S   +V+D  D   S+  WS+T KRGRK +
Subjt:  SRDKCNLCGSEFKSEKALCGHMRCHPDRSWRGLKPPAASPAGVADGISDPMAVADCKDNRLSVPRWSATDKRGRKCV

KAF7145039.1 hypothetical protein RHSIM_Rhsim04G0007800 [Rhododendron simsii]1.1e-0951.28Show/hide
Query:  SRDKCNLCGSEFKSEKALCGHMRCHPDRSWRGLKPPAASPAGVADGISDP-MAVADCKDNRLSVPRWSATDKRGRKCV
        +R  C+LCG  F S K+L GHMRCHP+R WRG++PP   PA VA   S P  +V+D  D   S+  WS+T KRGRK +
Subjt:  SRDKCNLCGSEFKSEKALCGHMRCHPDRSWRGLKPPAASPAGVADGISDP-MAVADCKDNRLSVPRWSATDKRGRKCV

KAF9587332.1 hypothetical protein IFM89_001322 [Coptis chinensis]2.5e-0947.44Show/hide
Query:  CNLCGSEFKSEKALCGHMRCHPDRSWRGLKPPAASPAGVADGISD----PMAVA---DCKDNRLSVPRWSATDKRGRK
        C +CG +F S K+L GHMRCHPDRSWRG++PP A P   +   S+    P  VA   + +     +P WS T KRGRK
Subjt:  CNLCGSEFKSEKALCGHMRCHPDRSWRGLKPPAASPAGVADGISD----PMAVA---DCKDNRLSVPRWSATDKRGRK

KAG5550893.1 hypothetical protein RHGRI_009360 [Rhododendron griersonianum]1.7e-1048.05Show/hide
Query:  SRDKCNLCGSEFKSEKALCGHMRCHPDRSWRGLKPPAASPAGVADGISDPMAVADCKDNRLSVPRWSATDKRGRKCV
        +R  C+LCG  F S K+L GHMRCHP+R WRG++PP      VA   S   +V+D  D   S+  WS+T KRGRK +
Subjt:  SRDKCNLCGSEFKSEKALCGHMRCHPDRSWRGLKPPAASPAGVADGISDPMAVADCKDNRLSVPRWSATDKRGRKCV

TrEMBL top hitse value%identityAlignment
A0A314L4K4 Zinc finger protein zat32.7e-0946.58Show/hide
Query:  CNLCGSEFKSEKALCGHMRCHPDRSWRGLKPPAASPAGVADGISDPMAVADC--KDNRLSVPRWSATDKRGRK
        C++CG  F S K+L GHMRCHP+R+WRG++PP            +  A A    +D   SVP WS T KRGRK
Subjt:  CNLCGSEFKSEKALCGHMRCHPDRSWRGLKPPAASPAGVADGISDPMAVADC--KDNRLSVPRWSATDKRGRK

A0A6A4LJ40 Uncharacterized protein (Fragment)7.9e-0940Show/hide
Query:  CNLCGSEFKSEKALCGHMRCHPDRSWRGLK-PPAASPAGVADGISDP-------MAVAD-CKDNRLSVPRWSATDKRGRKCVKKRKMTEERELTCSEESD
        C+LCG +F S K+L GHMRCHP+R WRG++ PP A  + ++  ISDP       MA  D   D   S+P W    KRGRK +    +TEE +L  + E  
Subjt:  CNLCGSEFKSEKALCGHMRCHPDRSWRGLK-PPAASPAGVADGISDP-------MAVAD-CKDNRLSVPRWSATDKRGRKCVKKRKMTEERELTCSEESD

Query:  QRGLIRRMLDFDLNELPQVDDNDDE
         R      L+  L    +VD  D E
Subjt:  QRGLIRRMLDFDLNELPQVDDNDDE

A0A6A4LM99 Uncharacterized protein (Fragment)8.4e-1148.05Show/hide
Query:  SRDKCNLCGSEFKSEKALCGHMRCHPDRSWRGLKPPAASPAGVADGISDPMAVADCKDNRLSVPRWSATDKRGRKCV
        +R  C+LCG  F S K+L GHMRCHP+R WRG++PP      VA   S   +V+D  D   S+  WS+T KRGRK +
Subjt:  SRDKCNLCGSEFKSEKALCGHMRCHPDRSWRGLKPPAASPAGVADGISDPMAVADCKDNRLSVPRWSATDKRGRKCV

A0A6J1CQY7 uncharacterized protein LOC1110133634.6e-0932.45Show/hide
Query:  KSSRDKCNLCGSEFKSEKALCGHMRCHPDRSWRGLKPPAASPAGVADGISDPMAVADCKDNRLSVPRWSATDKRGRKCVKKRKMTEERELTCSEESDQR-
        K  + KC +CG EF S K L GHMR HPDRSWRG++PP                         + P WS T  RGRK       ++   L   E S ++ 
Subjt:  KSSRDKCNLCGSEFKSEKALCGHMRCHPDRSWRGLKPPAASPAGVADGISDPMAVADCKDNRLSVPRWSATDKRGRKCVKKRKMTEERELTCSEESDQR-

Query:  ---------GLI-----------------RRMLDFDLNELPQVDDNDDEEV
                 G+I                 R+MLDFDLN+LP +++ D E +
Subjt:  ---------GLI-----------------RRMLDFDLNELPQVDDNDDEEV

P93716 Tapetum-specific zinc finger protein 11.2e-0939.32Show/hide
Query:  CNLCGSEFKSEKALCGHMRCHPDRSWRGLKPPAASPAGVADGISDPMAVADCKDNRLSVPRWSATDKRGRKCVKKRKMTEERELTCSEESDQRGLIRRML
        C++CG  F S K+L GHMR HP+R+WRG++PPA +        S+ +A A  K   LSVP WS   KRGRK             T +E S    L  R  
Subjt:  CNLCGSEFKSEKALCGHMRCHPDRSWRGLKPPAASPAGVADGISDPMAVADCKDNRLSVPRWSATDKRGRKCVKKRKMTEERELTCSEESDQRGLIRRML

Query:  DFDLNELPQVDDNDDEE
         FD        + DDEE
Subjt:  DFDLNELPQVDDNDDEE

SwissProt top hitse value%identityAlignment
O65499 Zinc finger protein ZAT31.2e-0665.62Show/hide
Query:  CNLCGSEFKSEKALCGHMRCHPDRSWRGLKPP
        C  CG +F S KAL GHMRCHP+R WRG+ PP
Subjt:  CNLCGSEFKSEKALCGHMRCHPDRSWRGLKPP

Q9SIJ0 Zinc finger protein ZAT24.2e-0763.64Show/hide
Query:  CNLCGSEFKSEKALCGHMRCHPDRSWRGLKPPA
        C  CG +F S KAL GHMRCHP+R WRG+ PP+
Subjt:  CNLCGSEFKSEKALCGHMRCHPDRSWRGLKPPA

Arabidopsis top hitse value%identityAlignment
AT2G17180.1 C2H2-like zinc finger protein3.0e-0863.64Show/hide
Query:  CNLCGSEFKSEKALCGHMRCHPDRSWRGLKPPA
        C  CG +F S KAL GHMRCHP+R WRG+ PP+
Subjt:  CNLCGSEFKSEKALCGHMRCHPDRSWRGLKPPA

AT2G26940.1 C2H2-type zinc finger family protein1.9e-0755.56Show/hide
Query:  KCNLCGSEFKSEKALCGHMRCHPDRSWRGLKPPAAS
        +C LCG EF++  +L GHMR HPDR+W+G++PP  S
Subjt:  KCNLCGSEFKSEKALCGHMRCHPDRSWRGLKPPAAS

AT4G35280.1 C2H2-like zinc finger protein8.6e-0865.62Show/hide
Query:  CNLCGSEFKSEKALCGHMRCHPDRSWRGLKPP
        C  CG +F S KAL GHMRCHP+R WRG+ PP
Subjt:  CNLCGSEFKSEKALCGHMRCHPDRSWRGLKPP

AT4G35610.1 zinc finger (C2H2 type) family protein6.8e-0550Show/hide
Query:  CNLCGSEFKSEKALCGHMRCHPDRSWRGLKPPAASPAG
        C++CG  F S KA+ GHMR H DR+++G  PP    AG
Subjt:  CNLCGSEFKSEKALCGHMRCHPDRSWRGLKPPAASPAG

AT5G56200.1 C2H2 type zinc finger transcription factor family8.1e-0659.38Show/hide
Query:  CNLCGSEFKSEKALCGHMRCHPDRSWRGLKPP
        C +C  +F S KAL GHMR HPDR W+G+ PP
Subjt:  CNLCGSEFKSEKALCGHMRCHPDRSWRGLKPP


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCGAAAGCCGTCCGAAAAGAGTTCAAGAGACAAATGCAACCTTTGCGGTAGCGAGTTCAAATCGGAGAAGGCGTTGTGTGGTCATATGAGGTGCCATCCAGATAGGTC
ATGGAGAGGATTGAAACCACCAGCTGCTTCTCCGGCTGGTGTCGCTGATGGAATCTCCGATCCTATGGCGGTTGCGGATTGTAAAGATAATAGGCTTTCGGTACCACGTT
GGTCTGCTACGGACAAGAGAGGCCGAAAGTGCGTAAAGAAAAGGAAAATGACTGAAGAACGTGAACTTACATGTTCTGAAGAATCTGATCAGAGGGGTTTAATAAGGAGA
ATGCTGGATTTTGATCTCAACGAGCTGCCACAGGTTGATGATAATGATGATGAAGAAGTTGGGATTTAG
mRNA sequenceShow/hide mRNA sequence
ATGCGAAAGCCGTCCGAAAAGAGTTCAAGAGACAAATGCAACCTTTGCGGTAGCGAGTTCAAATCGGAGAAGGCGTTGTGTGGTCATATGAGGTGCCATCCAGATAGGTC
ATGGAGAGGATTGAAACCACCAGCTGCTTCTCCGGCTGGTGTCGCTGATGGAATCTCCGATCCTATGGCGGTTGCGGATTGTAAAGATAATAGGCTTTCGGTACCACGTT
GGTCTGCTACGGACAAGAGAGGCCGAAAGTGCGTAAAGAAAAGGAAAATGACTGAAGAACGTGAACTTACATGTTCTGAAGAATCTGATCAGAGGGGTTTAATAAGGAGA
ATGCTGGATTTTGATCTCAACGAGCTGCCACAGGTTGATGATAATGATGATGAAGAAGTTGGGATTTAG
Protein sequenceShow/hide protein sequence
MRKPSEKSSRDKCNLCGSEFKSEKALCGHMRCHPDRSWRGLKPPAASPAGVADGISDPMAVADCKDNRLSVPRWSATDKRGRKCVKKRKMTEERELTCSEESDQRGLIRR
MLDFDLNELPQVDDNDDEEVGI