; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Sed0013043 (gene) of Chayote v1 genome

Gene IDSed0013043
OrganismSechium edule (Chayote v1)
Description60S ribosomal protein L18a-like protein
Genome locationLG08:38937472..38940915
RNA-Seq ExpressionSed0013043
SyntenySed0013043
Gene Ontology termsGO:0005840 - ribosome (cellular component)
GO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR044804 - AT1G29970-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004147407.1 60S ribosomal protein L18a-like protein [Cucumis sativus]2.4e-6476.1Show/hide
Query:  MSCDGMNNALNGDPQSQYHYGTFQGVANYY----PPAPQSQPQSFVGVHH---QPVISGHQPCYHGHLGYQSIPVQGYAIIEGRPFQEARLPCCGIGMGW
        MS DG +N + GDP SQYHYGTFQGVANYY     P PQ QPQS VG      QPV+SGHQPCYHGHLGYQ++PVQGYAI+EGRPFQEARLPCCGIGMGW
Subjt:  MSCDGMNNALNGDPQSQYHYGTFQGVANYY----PPAPQSQPQSFVGVHH---QPVISGHQPCYHGHLGYQSIPVQGYAIIEGRPFQEARLPCCGIGMGW

Query:  FLFIVGFFLGGIPWYIGAFIALFVQVDYREKPGYVACVIASVLVGLAIIFGITNGSDFW
        FLF++GFFLGGIPWY+GAFI LFV+VDYREKPGYVAC IASVL  +AI FGITNG + W
Subjt:  FLFIVGFFLGGIPWYIGAFIALFVQVDYREKPGYVACVIASVLVGLAIIFGITNGSDFW

XP_008444018.1 PREDICTED: 60S ribosomal protein L18a-like protein [Cucumis melo]4.6e-6374.84Show/hide
Query:  MSCDGMNNALNGDPQSQYHYGTFQGVANYY----PPAPQSQPQSFVGVHH---QPVISGHQPCYHGHLGYQSIPVQGYAIIEGRPFQEARLPCCGIGMGW
        MS DG ++ + GDP SQYHYGTFQGVANYY     P PQ QPQS VG       PV+SGHQPCYHGHLGYQ++PVQGYAI+EGRPFQEARLPCCGIGMGW
Subjt:  MSCDGMNNALNGDPQSQYHYGTFQGVANYY----PPAPQSQPQSFVGVHH---QPVISGHQPCYHGHLGYQSIPVQGYAIIEGRPFQEARLPCCGIGMGW

Query:  FLFIVGFFLGGIPWYIGAFIALFVQVDYREKPGYVACVIASVLVGLAIIFGITNGSDFW
        FLF++GFFLGGIPWY+GAFI LFV+VDYREKPGYVAC IASVL  +AI FGITNG + W
Subjt:  FLFIVGFFLGGIPWYIGAFIALFVQVDYREKPGYVACVIASVLVGLAIIFGITNGSDFW

XP_022140257.1 60S ribosomal protein L18a-like protein [Momordica charantia]2.5e-6173.58Show/hide
Query:  MSCDGMNNALNGDPQSQYHYGTFQGVANYYP----PAPQSQPQSFVGVHH---QPVISGHQPCYHGHLGYQSIPVQGYAIIEGRPFQEARLPCCGIGMGW
        MS DG N+A+ GDPQSQYHYGTFQGVANYYP    P PQ QP S VG       P +SG  P YHGHLGYQ++PVQGYAIIEGRP+QEARLPCCGIGMGW
Subjt:  MSCDGMNNALNGDPQSQYHYGTFQGVANYYP----PAPQSQPQSFVGVHH---QPVISGHQPCYHGHLGYQSIPVQGYAIIEGRPFQEARLPCCGIGMGW

Query:  FLFIVGFFLGGIPWYIGAFIALFVQVDYREKPGYVACVIASVLVGLAIIFGITNGSDFW
        FLF++GFFLGGIPWY+GAFI LFV+VDYREKPGYVACVIASVL  +AI FG+T G++ W
Subjt:  FLFIVGFFLGGIPWYIGAFIALFVQVDYREKPGYVACVIASVLVGLAIIFGITNGSDFW

XP_023001481.1 60S ribosomal protein L18a-like protein [Cucurbita maxima]1.8e-5971.79Show/hide
Query:  MSCDGMNNALNGDPQSQYHYGTFQGVANYYPPAPQSQ----PQSFVGVHHQPVISGHQPCYHGHLGYQSIPVQGYAIIEGRPFQEARLPCCGIGMGWFLF
        MSCDG ++A+ GDPQSQYHYGTFQGVANYY  APQ Q    PQS VG   Q V     PCYHGHL YQ++PVQGYAIIEGRPF EARLPCCGIGMGWFLF
Subjt:  MSCDGMNNALNGDPQSQYHYGTFQGVANYYPPAPQSQ----PQSFVGVHHQPVISGHQPCYHGHLGYQSIPVQGYAIIEGRPFQEARLPCCGIGMGWFLF

Query:  IVGFFLGGIPWYIGAFIALFVQVDYREKPGYVACVIASVLVGLAIIFGITNGSDFW
        ++GFFLGGIPWY+GAF+ LFV+VDYREKPGY+AC IASVL  +AI FG++ G + W
Subjt:  IVGFFLGGIPWYIGAFIALFVQVDYREKPGYVACVIASVLVGLAIIFGITNGSDFW

XP_038895475.1 60S ribosomal protein L18a-like protein [Benincasa hispida]5.4e-6477.56Show/hide
Query:  MSCDGMNNALNGDPQSQYHYGTFQGVANYYPPAPQSQPQSFVGVHHQPV----ISGHQPCYHGHLGYQSIPVQGYAIIEGRPFQEARLPCCGIGMGWFLF
        MS DG ++A+ GDPQSQYHYGTFQGVANYY  APQ+QPQSFVG   QPV    +SGH PCYHGHLGYQ++PVQGYAIIE RPF+EARLPCCGIGMGWFLF
Subjt:  MSCDGMNNALNGDPQSQYHYGTFQGVANYYPPAPQSQPQSFVGVHHQPV----ISGHQPCYHGHLGYQSIPVQGYAIIEGRPFQEARLPCCGIGMGWFLF

Query:  IVGFFLGGIPWYIGAFIALFVQVDYREKPGYVACVIASVLVGLAIIFGITNGSDFW
        ++GFFLGGIPWY+GAFI LFV+VDYREKPGYVAC IASVL  +AI FGITNG + W
Subjt:  IVGFFLGGIPWYIGAFIALFVQVDYREKPGYVACVIASVLVGLAIIFGITNGSDFW

TrEMBL top hitse value%identityAlignment
A0A0A0M051 Uncharacterized protein1.2e-6476.1Show/hide
Query:  MSCDGMNNALNGDPQSQYHYGTFQGVANYY----PPAPQSQPQSFVGVHH---QPVISGHQPCYHGHLGYQSIPVQGYAIIEGRPFQEARLPCCGIGMGW
        MS DG +N + GDP SQYHYGTFQGVANYY     P PQ QPQS VG      QPV+SGHQPCYHGHLGYQ++PVQGYAI+EGRPFQEARLPCCGIGMGW
Subjt:  MSCDGMNNALNGDPQSQYHYGTFQGVANYY----PPAPQSQPQSFVGVHH---QPVISGHQPCYHGHLGYQSIPVQGYAIIEGRPFQEARLPCCGIGMGW

Query:  FLFIVGFFLGGIPWYIGAFIALFVQVDYREKPGYVACVIASVLVGLAIIFGITNGSDFW
        FLF++GFFLGGIPWY+GAFI LFV+VDYREKPGYVAC IASVL  +AI FGITNG + W
Subjt:  FLFIVGFFLGGIPWYIGAFIALFVQVDYREKPGYVACVIASVLVGLAIIFGITNGSDFW

A0A1S3B9D9 60S ribosomal protein L18a-like protein2.2e-6374.84Show/hide
Query:  MSCDGMNNALNGDPQSQYHYGTFQGVANYY----PPAPQSQPQSFVGVHH---QPVISGHQPCYHGHLGYQSIPVQGYAIIEGRPFQEARLPCCGIGMGW
        MS DG ++ + GDP SQYHYGTFQGVANYY     P PQ QPQS VG       PV+SGHQPCYHGHLGYQ++PVQGYAI+EGRPFQEARLPCCGIGMGW
Subjt:  MSCDGMNNALNGDPQSQYHYGTFQGVANYY----PPAPQSQPQSFVGVHH---QPVISGHQPCYHGHLGYQSIPVQGYAIIEGRPFQEARLPCCGIGMGW

Query:  FLFIVGFFLGGIPWYIGAFIALFVQVDYREKPGYVACVIASVLVGLAIIFGITNGSDFW
        FLF++GFFLGGIPWY+GAFI LFV+VDYREKPGYVAC IASVL  +AI FGITNG + W
Subjt:  FLFIVGFFLGGIPWYIGAFIALFVQVDYREKPGYVACVIASVLVGLAIIFGITNGSDFW

A0A6J1CGC1 60S ribosomal protein L18a-like protein1.2e-6173.58Show/hide
Query:  MSCDGMNNALNGDPQSQYHYGTFQGVANYYP----PAPQSQPQSFVGVHH---QPVISGHQPCYHGHLGYQSIPVQGYAIIEGRPFQEARLPCCGIGMGW
        MS DG N+A+ GDPQSQYHYGTFQGVANYYP    P PQ QP S VG       P +SG  P YHGHLGYQ++PVQGYAIIEGRP+QEARLPCCGIGMGW
Subjt:  MSCDGMNNALNGDPQSQYHYGTFQGVANYYP----PAPQSQPQSFVGVHH---QPVISGHQPCYHGHLGYQSIPVQGYAIIEGRPFQEARLPCCGIGMGW

Query:  FLFIVGFFLGGIPWYIGAFIALFVQVDYREKPGYVACVIASVLVGLAIIFGITNGSDFW
        FLF++GFFLGGIPWY+GAFI LFV+VDYREKPGYVACVIASVL  +AI FG+T G++ W
Subjt:  FLFIVGFFLGGIPWYIGAFIALFVQVDYREKPGYVACVIASVLVGLAIIFGITNGSDFW

A0A6J1EHH7 60S ribosomal protein L18a-like protein3.6e-5870.51Show/hide
Query:  MSCDGMNNALNGDPQSQYHYGTFQGVANYY----PPAPQSQPQSFVGVHHQPVISGHQPCYHGHLGYQSIPVQGYAIIEGRPFQEARLPCCGIGMGWFLF
        MS DG ++A+ GDPQSQYHYGTFQGVANYY     P PQ  PQS VG   Q V     PCYHGHL YQ++PVQGYAIIEGRPF EARLPCCGIGMGWFLF
Subjt:  MSCDGMNNALNGDPQSQYHYGTFQGVANYY----PPAPQSQPQSFVGVHHQPVISGHQPCYHGHLGYQSIPVQGYAIIEGRPFQEARLPCCGIGMGWFLF

Query:  IVGFFLGGIPWYIGAFIALFVQVDYREKPGYVACVIASVLVGLAIIFGITNGSDFW
        ++GFFLGGIPWY+GAF+ LFV+VDYREKPGY+AC IASVL  +AI FG++ G + W
Subjt:  IVGFFLGGIPWYIGAFIALFVQVDYREKPGYVACVIASVLVGLAIIFGITNGSDFW

A0A6J1KIR0 60S ribosomal protein L18a-like protein8.7e-6071.79Show/hide
Query:  MSCDGMNNALNGDPQSQYHYGTFQGVANYYPPAPQSQ----PQSFVGVHHQPVISGHQPCYHGHLGYQSIPVQGYAIIEGRPFQEARLPCCGIGMGWFLF
        MSCDG ++A+ GDPQSQYHYGTFQGVANYY  APQ Q    PQS VG   Q V     PCYHGHL YQ++PVQGYAIIEGRPF EARLPCCGIGMGWFLF
Subjt:  MSCDGMNNALNGDPQSQYHYGTFQGVANYYPPAPQSQ----PQSFVGVHHQPVISGHQPCYHGHLGYQSIPVQGYAIIEGRPFQEARLPCCGIGMGWFLF

Query:  IVGFFLGGIPWYIGAFIALFVQVDYREKPGYVACVIASVLVGLAIIFGITNGSDFW
        ++GFFLGGIPWY+GAF+ LFV+VDYREKPGY+AC IASVL  +AI FG++ G + W
Subjt:  IVGFFLGGIPWYIGAFIALFVQVDYREKPGYVACVIASVLVGLAIIFGITNGSDFW

SwissProt top hitse value%identityAlignment
Q8L9S1 60S ribosomal protein L18a-like protein9.6e-3251.03Show/hide
Query:  QSQYHYGTFQGVANYYPPAPQSQPQSFVGVHHQPVISGH-QPCYHGHLG----YQSIP--VQGYAIIEGRPFQEARLPCCGIGMGWFLFIVGFFLGGIPW
        Q QY+YGTFQGVAN+  P P   PQ     H      GH      GH G     Q  P  V  Y ++E RP  E  LPCCG+GMGWFLFI+GF  GGIPW
Subjt:  QSQYHYGTFQGVANYYPPAPQSQPQSFVGVHHQPVISGH-QPCYHGHLG----YQSIP--VQGYAIIEGRPFQEARLPCCGIGMGWFLFIVGFFLGGIPW

Query:  YIGAFIALFVQVDYREKPGYVACVIASVLVGLAIIFGITNGSDFW
        Y+GAFI L   VD+REK GYVAC IASV+  +A++ G+T   + W
Subjt:  YIGAFIALFVQVDYREKPGYVACVIASVLVGLAIIFGITNGSDFW

Arabidopsis top hitse value%identityAlignment
AT1G17080.1 Ribosomal protein L18ae family1.2e-3753.24Show/hide
Query:  SQYH-YGTFQGVANYYPPAPQSQPQSFVGVHHQPVISGHQPCYHGHLGYQSIPVQGYAIIEGRPFQEARLPCCGIGMGWFLFIVGFFLGGIPWYIGAFIA
        +Q+H YGTFQGV+NY PP   +    F      P +      Y+ H GYQ++PV G  + EGRP ++ RLPCCGIG+GWFLFIVGFFLG IPWY+G FI 
Subjt:  SQYH-YGTFQGVANYYPPAPQSQPQSFVGVHHQPVISGHQPCYHGHLGYQSIPVQGYAIIEGRPFQEARLPCCGIGMGWFLFIVGFFLGGIPWYIGAFIA

Query:  LF-VQVDYREKPGYVACVIASVLVGLAIIFGITNGSDFW
        +F  ++DYREKPGY+AC IA++L  +A+I G++ G+D W
Subjt:  LF-VQVDYREKPGYVACVIASVLVGLAIIFGITNGSDFW

AT1G29970.1 60S ribosomal protein L18A-16.8e-3351.03Show/hide
Query:  QSQYHYGTFQGVANYYPPAPQSQPQSFVGVHHQPVISGH-QPCYHGHLG----YQSIP--VQGYAIIEGRPFQEARLPCCGIGMGWFLFIVGFFLGGIPW
        Q QY+YGTFQGVAN+  P P   PQ     H      GH      GH G     Q  P  V  Y ++E RP  E  LPCCG+GMGWFLFI+GF  GGIPW
Subjt:  QSQYHYGTFQGVANYYPPAPQSQPQSFVGVHHQPVISGH-QPCYHGHLG----YQSIP--VQGYAIIEGRPFQEARLPCCGIGMGWFLFIVGFFLGGIPW

Query:  YIGAFIALFVQVDYREKPGYVACVIASVLVGLAIIFGITNGSDFW
        Y+GAFI L   VD+REK GYVAC IASV+  +A++ G+T   + W
Subjt:  YIGAFIALFVQVDYREKPGYVACVIASVLVGLAIIFGITNGSDFW

AT1G29970.2 60S ribosomal protein L18A-16.0e-2953.97Show/hide
Query:  QSQYHYGTFQGVANYYPPAPQSQPQSFVGVHHQPVISGH-QPCYHGHLG----YQSIP--VQGYAIIEGRPFQEARLPCCGIGMGWFLFIVGFFLGGIPW
        Q QY+YGTFQGVAN+  P P   PQ     H      GH      GH G     Q  P  V  Y ++E RP  E  LPCCG+GMGWFLFI+GF  GGIPW
Subjt:  QSQYHYGTFQGVANYYPPAPQSQPQSFVGVHHQPVISGH-QPCYHGHLG----YQSIP--VQGYAIIEGRPFQEARLPCCGIGMGWFLFIVGFFLGGIPW

Query:  YIGAFIALFVQVDYREKPGYVACVIA
        Y+GAFI L   VD+REK GYVAC IA
Subjt:  YIGAFIALFVQVDYREKPGYVACVIA

AT1G29970.3 60S ribosomal protein L18A-19.6e-2739.57Show/hide
Query:  QSQYHYGTFQGVANYYPPAPQSQPQSFVGVHHQPVISGH-QPCYHGHLG----YQSIP--VQGYAIIEGRPFQEARLPCCGIGMGWFL------------
        Q QY+YGTFQGVAN+  P P   PQ     H      GH      GH G     Q  P  V  Y ++E RP  E  LPCCG+GMGWFL            
Subjt:  QSQYHYGTFQGVANYYPPAPQSQPQSFVGVHHQPVISGH-QPCYHGHLG----YQSIP--VQGYAIIEGRPFQEARLPCCGIGMGWFL------------

Query:  ------------------------------FIVGFFLGGIPWYIGAFIALFVQVDYREKPGYVACVIASVLVGLAIIFGITNGSDFW
                                      FI+GF  GGIPWY+GAFI L   VD+REK GYVAC IASV+  +A++ G+T   + W
Subjt:  ------------------------------FIVGFFLGGIPWYIGAFIALFVQVDYREKPGYVACVIASVLVGLAIIFGITNGSDFW

AT1G53560.1 Ribosomal protein L18ae family9.9e-3247.55Show/hide
Query:  YGTFQGVANYYPPAPQSQPQSFVGVHHQPVISGHQPC------YHGHLGYQSI----PVQGYAIIEGRPFQEARLPCCGIGMGWFLFIVGFFLGGIPWYI
        YGTFQGV  Y PP+    P       H PVI   QP       +H    +Q I     V GY + +GRP ++ RLPCCG+G+GWFLFI+GF LG IPWY+
Subjt:  YGTFQGVANYYPPAPQSQPQSFVGVHHQPVISGHQPC------YHGHLGYQSI----PVQGYAIIEGRPFQEARLPCCGIGMGWFLFIVGFFLGGIPWYI

Query:  GAFIALFVQVDYREKPGYVACVIASVLVGLAIIFGITNGSDFW
        G FI +  ++D REKPGYVAC IA+V+  + I+FG+  G   W
Subjt:  GAFIALFVQVDYREKPGYVACVIASVLVGLAIIFGITNGSDFW


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGTTGCGATGGGATGAACAACGCGTTAAACGGCGATCCACAGAGTCAATACCATTACGGTACGTTTCAGGGCGTTGCAAACTATTATCCTCCTGCCCCACAATCGCA
GCCCCAATCTTTCGTCGGCGTCCATCATCAGCCAGTAATTTCTGGCCACCAACCTTGTTACCATGGACATCTAGGTTACCAATCTATTCCAGTTCAAGGATATGCTATTA
TTGAGGGAAGACCTTTTCAAGAAGCCCGTCTTCCTTGTTGTGGCATTGGCATGGGCTGGTTCTTGTTTATCGTAGGTTTCTTTCTTGGTGGAATTCCCTGGTATATTGGA
GCTTTTATCGCACTCTTTGTACAGGTTGATTATCGAGAAAAGCCTGGATATGTTGCATGTGTAATTGCTTCGGTTCTTGTTGGCCTTGCTATAATATTTGGTATAACCAA
TGGATCTGATTTCTGGTGA
mRNA sequenceShow/hide mRNA sequence
CTAATTCAATCCCTCCAAAATTTCCCGGCGAAACCTCGAAGAAGAAGAAGAAGAAGAACAGAAAAGCGACGACGGAACCCTAGCCGTCGCCTCCATAAATCAAAGATCAT
ATTTGATTTTGATTTTCTTCTTCTTCTTCTTCTGCAATTAATATGAGTTGCGATGGGATGAACAACGCGTTAAACGGCGATCCACAGAGTCAATACCATTACGGTACGTT
TCAGGGCGTTGCAAACTATTATCCTCCTGCCCCACAATCGCAGCCCCAATCTTTCGTCGGCGTCCATCATCAGCCAGTAATTTCTGGCCACCAACCTTGTTACCATGGAC
ATCTAGGTTACCAATCTATTCCAGTTCAAGGATATGCTATTATTGAGGGAAGACCTTTTCAAGAAGCCCGTCTTCCTTGTTGTGGCATTGGCATGGGCTGGTTCTTGTTT
ATCGTAGGTTTCTTTCTTGGTGGAATTCCCTGGTATATTGGAGCTTTTATCGCACTCTTTGTACAGGTTGATTATCGAGAAAAGCCTGGATATGTTGCATGTGTAATTGC
TTCGGTTCTTGTTGGCCTTGCTATAATATTTGGTATAACCAATGGATCTGATTTCTGGTGAAGGAGACAATTTGCACAACGGTGGGATTCTGCATCAACGAAAACAACTG
GTGTGATTCTGTAATTAGCTTTTAGTTTGTATTATTTCACTCTCTCTATATATATCAACTTATTGGTTTCCTTTATTACTGCAACCTTTATGACTTGCCAAATATGAAAT
ATTAATAGTTTGAAAAAAAATTAAATTATTTGTATTGAATATCTTGGTCGATTTTTATCGACAACTTTCATTGAATGTTTGGATTGATGAATGATTGGTTTAATCAA
Protein sequenceShow/hide protein sequence
MSCDGMNNALNGDPQSQYHYGTFQGVANYYPPAPQSQPQSFVGVHHQPVISGHQPCYHGHLGYQSIPVQGYAIIEGRPFQEARLPCCGIGMGWFLFIVGFFLGGIPWYIG
AFIALFVQVDYREKPGYVACVIASVLVGLAIIFGITNGSDFW