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Sed0013088 (gene) of Chayote v1 genome

Gene IDSed0013088
OrganismSechium edule (Chayote v1)
DescriptionTetratricopeptide repeat (TPR)-like superfamily protein
Genome locationLG13:25134367..25136539
RNA-Seq ExpressionSed0013088
SyntenySed0013088
Gene Ontology termsGO:0005515 - protein binding (molecular function)
InterPro domainsIPR011990 - Tetratricopeptide-like helical domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF5945839.1 hypothetical protein HYC85_016067 [Camellia sinensis]1.6e-4366.17Show/hide
Query:  GGGVGSGGGGENWFGDGYGDSGRENRSMEEYYQKMIQAYPGDAVILTNYARFLKEVKGDAVKAEEYCERAILANPSDENALSLYGDLIWKTHRDAGRAQI
        GGG G  GGG+     GY DS   N S EEYY KMI AYPGDA++L+NYA+FLKEV+GD+VKAEEYC RAILA+PSD N LSLY DLIW+TH+DA RA+ 
Subjt:  GGGVGSGGGGENWFGDGYGDSGRENRSMEEYYQKMIQAYPGDAVILTNYARFLKEVKGDAVKAEEYCERAILANPSDENALSLYGDLIWKTHRDAGRAQI

Query:  YFDQAVNSAPNDCYVLASYAKFLWDAGDEDDSE
        YFDQAV +AP+DCYV+ASYA+FLWD+ + ++ E
Subjt:  YFDQAVNSAPNDCYVLASYAKFLWDAGDEDDSE

PON63231.1 Tetratricopeptide-like helical domain containing protein [Parasponia andersonii]3.6e-4357.14Show/hide
Query:  DEDSPEVLAGGGVGSG-----GGGENWFG---------DGYGDSGRENRSMEEYYQKMIQAYPGDAVILTNYARFLKEVKGDAVKAEEYCERAILANPSD
        D     VL GGGVG G     GGG  W G          G+ DS   N S + YYQKMI+A PG+ ++L+NYA+FLK+V+GD V AEEYC RAILANP+D
Subjt:  DEDSPEVLAGGGVGSG-----GGGENWFG---------DGYGDSGRENRSMEEYYQKMIQAYPGDAVILTNYARFLKEVKGDAVKAEEYCERAILANPSD

Query:  ENALSLYGDLIWKTHRDAGRAQIYFDQAVNSAPNDCYVLASYAKFLWDAGDEDDSEVETNMKAT-NFY
         N LS+Y DLIW+ H+DA RA+ YFDQAV +AP+DCYVLASYA+FLWDA ++D+ E ETNM +T NF+
Subjt:  ENALSLYGDLIWKTHRDAGRAQIYFDQAVNSAPNDCYVLASYAKFLWDAGDEDDSEVETNMKAT-NFY

XP_028102716.1 aspartate, glycine, lysine and serine-rich protein-like [Camellia sinensis]1.6e-4366.17Show/hide
Query:  GGGVGSGGGGENWFGDGYGDSGRENRSMEEYYQKMIQAYPGDAVILTNYARFLKEVKGDAVKAEEYCERAILANPSDENALSLYGDLIWKTHRDAGRAQI
        GGG G  GGG+     GY DS   N S EEYY KMI AYPGDA++L+NYA+FLKEV+GD+VKAEEYC RAILA+PSD N LSLY DLIW+TH+DA RA+ 
Subjt:  GGGVGSGGGGENWFGDGYGDSGRENRSMEEYYQKMIQAYPGDAVILTNYARFLKEVKGDAVKAEEYCERAILANPSDENALSLYGDLIWKTHRDAGRAQI

Query:  YFDQAVNSAPNDCYVLASYAKFLWDAGDEDDSE
        YFDQAV +AP+DCYV+ASYA+FLWD+ + ++ E
Subjt:  YFDQAVNSAPNDCYVLASYAKFLWDAGDEDDSE

XP_038896674.1 uncharacterized protein LOC120084935 isoform X1 [Benincasa hispida]1.1e-5860.09Show/hide
Query:  MTLSKILPPSTPALNSKLRIQRSWPVFDLVPIARFQKIGAASTSVNMAS-----------KSATSFLSPITVEGLRAEVE---DSERSRFEK--------
        M L  +LPP+  A+NSKL I RS P FDLVPI+RFQ I  AS SV+  S            S  SF  PI VE    E+E    SE+S+FEK        
Subjt:  MTLSKILPPSTPALNSKLRIQRSWPVFDLVPIARFQKIGAASTSVNMAS-----------KSATSFLSPITVEGLRAEVE---DSERSRFEK--------

Query:  --------ECEDEDSPEVLAGGGVGS-GGGGENWFGDGYGDSGRENRSMEEYYQKMIQAYPGDAVILTNYARFLKEVKGDAVKAEEYCERAILANPSDEN
                + E E  PEV  GGGVGS GGGGENWFGD  GDSGR + SM+EYYQKMI+AYPGDA+IL+NYARFLKEVK DAVKAEEYCERAILA P+D N
Subjt:  --------ECEDEDSPEVLAGGGVGS-GGGGENWFGDGYGDSGRENRSMEEYYQKMIQAYPGDAVILTNYARFLKEVKGDAVKAEEYCERAILANPSDEN

Query:  ALSLYGDLIWKTHRDAGRAQIYFDQAVNSAPND
         LSLYGDLIW+THRD  RA+ YF QAVNS+PND
Subjt:  ALSLYGDLIWKTHRDAGRAQIYFDQAVNSAPND

XP_038896675.1 uncharacterized protein LOC120084935 isoform X2 [Benincasa hispida]1.2e-6561.89Show/hide
Query:  MTLSKILPPSTPALNSKLRIQRSWPVFDLVPIARFQKIGAASTSVNMAS-----------KSATSFLSPITVEGLRAEVE---DSERSRFEK--------
        M L  +LPP+  A+NSKL I RS P FDLVPI+RFQ I  AS SV+  S            S  SF  PI VE    E+E    SE+S+FEK        
Subjt:  MTLSKILPPSTPALNSKLRIQRSWPVFDLVPIARFQKIGAASTSVNMAS-----------KSATSFLSPITVEGLRAEVE---DSERSRFEK--------

Query:  --------ECEDEDSPEVLAGGGVGS-GGGGENWFGDGYGDSGRENRSMEEYYQKMIQAYPGDAVILTNYARFLKEVKGDAVKAEEYCERAILANPSDEN
                + E E  PEV  GGGVGS GGGGENWFGD  GDSGR + SM+EYYQKMI+AYPGDA+IL+NYARFLKEVK DAVKAEEYCERAILA P+D N
Subjt:  --------ECEDEDSPEVLAGGGVGS-GGGGENWFGDGYGDSGRENRSMEEYYQKMIQAYPGDAVILTNYARFLKEVKGDAVKAEEYCERAILANPSDEN

Query:  ALSLYGDLIWKTHRDAGRAQIYFDQAVNSAPNDCYVLASYAKFL
         LSLYGDLIW+THRD  RA+ YF QAVNS+PNDCYVLASYAKFL
Subjt:  ALSLYGDLIWKTHRDAGRAQIYFDQAVNSAPNDCYVLASYAKFL

TrEMBL top hitse value%identityAlignment
A0A1R3GI83 Tetratricopeptide-like helical2.3e-4367.41Show/hide
Query:  GGGVGSGGGGENWFGDGYGDSGRENRSMEEYYQKMIQAYPGDAVILTNYARFLKEVKGDAVKAEEYCERAILANPSDENALSLYGDLIWKTHRDAGRAQI
        GGG GS GG   W   GY DS   N S E YYQKMI+A PG+ ++L+NYARFLKEV+GD VKAEEYC RAILANP+D N LS+YGDLIWKT +DA RA+ 
Subjt:  GGGVGSGGGGENWFGDGYGDSGRENRSMEEYYQKMIQAYPGDAVILTNYARFLKEVKGDAVKAEEYCERAILANPSDENALSLYGDLIWKTHRDAGRAQI

Query:  YFDQAVNSAPNDCYVLASYAKFLWDAGDEDDSEVE
        YFDQAV +APNDCYVLASYA FLWDA ++++ E E
Subjt:  YFDQAVNSAPNDCYVLASYAKFLWDAGDEDDSEVE

A0A1R3IEX9 Tetratricopeptide-like helical2.3e-4368.12Show/hide
Query:  GGGVGSGGGGENWFGD---GYGDSGRENRSMEEYYQKMIQAYPGDAVILTNYARFLKEVKGDAVKAEEYCERAILANPSDENALSLYGDLIWKTHRDAGR
        GGG GSGGGG +  GD   GY DS   N S E YYQKMI+A PG+ ++L+NYARFLKEV+GD VKAEEYC RAILANP+D N LS+YGDLIWKT +DA R
Subjt:  GGGVGSGGGGENWFGD---GYGDSGRENRSMEEYYQKMIQAYPGDAVILTNYARFLKEVKGDAVKAEEYCERAILANPSDENALSLYGDLIWKTHRDAGR

Query:  AQIYFDQAVNSAPNDCYVLASYAKFLWDAGDEDDSEVE
        A+ YFDQAV +APNDCYVLASYA FLWDA ++++ E E
Subjt:  AQIYFDQAVNSAPNDCYVLASYAKFLWDAGDEDDSEVE

A0A2P5CQD0 Tetratricopeptide-like helical domain containing protein1.8e-4357.14Show/hide
Query:  DEDSPEVLAGGGVGSG-----GGGENWFG---------DGYGDSGRENRSMEEYYQKMIQAYPGDAVILTNYARFLKEVKGDAVKAEEYCERAILANPSD
        D     VL GGGVG G     GGG  W G          G+ DS   N S + YYQKMI+A PG+ ++L+NYA+FLK+V+GD V AEEYC RAILANP+D
Subjt:  DEDSPEVLAGGGVGSG-----GGGENWFG---------DGYGDSGRENRSMEEYYQKMIQAYPGDAVILTNYARFLKEVKGDAVKAEEYCERAILANPSD

Query:  ENALSLYGDLIWKTHRDAGRAQIYFDQAVNSAPNDCYVLASYAKFLWDAGDEDDSEVETNMKAT-NFY
         N LS+Y DLIW+ H+DA RA+ YFDQAV +AP+DCYVLASYA+FLWDA ++D+ E ETNM +T NF+
Subjt:  ENALSLYGDLIWKTHRDAGRAQIYFDQAVNSAPNDCYVLASYAKFLWDAGDEDDSEVETNMKAT-NFY

A0A4S4F256 Uncharacterized protein7.9e-4466.17Show/hide
Query:  GGGVGSGGGGENWFGDGYGDSGRENRSMEEYYQKMIQAYPGDAVILTNYARFLKEVKGDAVKAEEYCERAILANPSDENALSLYGDLIWKTHRDAGRAQI
        GGG G  GGG+     GY DS   N S EEYY KMI AYPGDA++L+NYA+FLKEV+GD+VKAEEYC RAILA+PSD N LSLY DLIW+TH+DA RA+ 
Subjt:  GGGVGSGGGGENWFGDGYGDSGRENRSMEEYYQKMIQAYPGDAVILTNYARFLKEVKGDAVKAEEYCERAILANPSDENALSLYGDLIWKTHRDAGRAQI

Query:  YFDQAVNSAPNDCYVLASYAKFLWDAGDEDDSE
        YFDQAV +AP+DCYV+ASYA+FLWD+ + ++ E
Subjt:  YFDQAVNSAPNDCYVLASYAKFLWDAGDEDDSE

A0A7J7GYP1 Uncharacterized protein7.9e-4466.17Show/hide
Query:  GGGVGSGGGGENWFGDGYGDSGRENRSMEEYYQKMIQAYPGDAVILTNYARFLKEVKGDAVKAEEYCERAILANPSDENALSLYGDLIWKTHRDAGRAQI
        GGG G  GGG+     GY DS   N S EEYY KMI AYPGDA++L+NYA+FLKEV+GD+VKAEEYC RAILA+PSD N LSLY DLIW+TH+DA RA+ 
Subjt:  GGGVGSGGGGENWFGDGYGDSGRENRSMEEYYQKMIQAYPGDAVILTNYARFLKEVKGDAVKAEEYCERAILANPSDENALSLYGDLIWKTHRDAGRAQI

Query:  YFDQAVNSAPNDCYVLASYAKFLWDAGDEDDSE
        YFDQAV +AP+DCYV+ASYA+FLWD+ + ++ E
Subjt:  YFDQAVNSAPNDCYVLASYAKFLWDAGDEDDSE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G04530.1 Tetratricopeptide repeat (TPR)-like superfamily protein9.9e-2343.75Show/hide
Query:  GRENRSMEEYYQKMIQAYPGDAVILTNYARFLKEVKGDAVKAEEYCERAILANPSDENALSLYGDLIWKTHRDAGRAQIYFDQAVNSAPNDCYVLASYAK
        G ++++  +YY+ M++ YP   ++L NYA+FL E KGD   AEEY  +  +  PSD  AL+ YG L+ K H+D  +A  YF++AV ++P+D  VLA+YA 
Subjt:  GRENRSMEEYYQKMIQAYPGDAVILTNYARFLKEVKGDAVKAEEYCERAILANPSDENALSLYGDLIWKTHRDAGRAQIYFDQAVNSAPNDCYVLASYAK

Query:  FLWDAGDEDDSE
        FLW+   +DD E
Subjt:  FLWDAGDEDDSE

AT1G80130.1 Tetratricopeptide repeat (TPR)-like superfamily protein5.1e-3546.24Show/hide
Query:  SPITVEGLRAEVEDSERSRFEKECEDEDSPEVLAGGGVGSGGGGENWFGDGYG------DSGRENRSMEEYYQKMIQAYPGDAVILTNYARFLKEVKGDA
        SP  VE L      S   + +K   ++    +++GGG G GG G N    G G      D GR   + + YY++MI + PG++++  NYA+FLKEVKGD 
Subjt:  SPITVEGLRAEVEDSERSRFEKECEDEDSPEVLAGGGVGSGGGGENWFGDGYG------DSGRENRSMEEYYQKMIQAYPGDAVILTNYARFLKEVKGDA

Query:  VKAEEYCERAILANPSDENALSLYGDLIWKTHRDAGRAQIYFDQAVNSAPNDCYVLASYAKFLWDAGDEDDSE
         KAEEYCERAIL N +D N LSLY DLI   H+D  RA  Y+ QAV  +P DCYV ASYA+FLWD  ++++ E
Subjt:  VKAEEYCERAILANPSDENALSLYGDLIWKTHRDAGRAQIYFDQAVNSAPNDCYVLASYAKFLWDAGDEDDSE

AT4G17940.1 Tetratricopeptide repeat (TPR)-like superfamily protein2.3e-3552.59Show/hide
Query:  GGGVGSGGGGENWFGDGYGDSGRENRSMEEYYQKMIQAYPGDAVILTNYARFLKEVKGDAVKAEEYCERAILANPSDENALSLYGDLIWKTHRDAGRAQI
        GGGVG G G    +G+G G    +   + +YY++M+++ P ++++L NY +FL EV+ DA  AEEY  RAIL NP D  ALS+YG LIW+T RD  RAQ 
Subjt:  GGGVGSGGGGENWFGDGYGDSGRENRSMEEYYQKMIQAYPGDAVILTNYARFLKEVKGDAVKAEEYCERAILANPSDENALSLYGDLIWKTHRDAGRAQI

Query:  YFDQAVNSAPNDCYVLASYAKFLWDAGDEDDSEVE
        YFDQAVN++PNDC VL SYA+F+W+A D+DD + E
Subjt:  YFDQAVNSAPNDCYVLASYAKFLWDAGDEDDSEVE

AT4G32340.1 Tetratricopeptide repeat (TPR)-like superfamily protein9.2e-3756.38Show/hide
Query:  EDEDSPEVLAG-----GGVGSGGGGENWFGDGYGDSGRENRSMEEYYQKMIQAYPGDAVILTNYARFLKEVKGDAVKAEEYCERAILANPS-DENALSLY
        E+  S  VL G     GG   G GG    G G G  G    S++ YY++MIQ YPGD ++L+NYARFLKEVKGD  KAEEYCERA+L+    D   LS+Y
Subjt:  EDEDSPEVLAG-----GGVGSGGGGENWFGDGYGDSGRENRSMEEYYQKMIQAYPGDAVILTNYARFLKEVKGDAVKAEEYCERAILANPS-DENALSLY

Query:  GDLIWKTHRDAGRAQIYFDQAVNSAPNDCYVLASYAKFLWDAGDEDDSE
        GDLIWK H D  RAQ Y+DQAV S+P+DC VLASYA+FLWDA +E + E
Subjt:  GDLIWKTHRDAGRAQIYFDQAVNSAPNDCYVLASYAKFLWDAGDEDDSE

AT5G20190.1 Tetratricopeptide repeat (TPR)-like superfamily protein5.4e-3753.06Show/hide
Query:  DEDSPEVLAGGGVG---SGGGGENWFGDGYGDSGRENRSMEEYYQKMIQAYPGDAVILTNYARFLKEVKGDAVKAEEYCERAILANPSDENALSLYGDLI
        DED+ EV  GGG G    GG G +      GD G +N  +  +Y+KMI+A PG+ + L+NYA+FLKEV+ D +KAEEYC RAIL +P+D N L++Y +L+
Subjt:  DEDSPEVLAGGGVG---SGGGGENWFGDGYGDSGRENRSMEEYYQKMIQAYPGDAVILTNYARFLKEVKGDAVKAEEYCERAILANPSDENALSLYGDLI

Query:  WKTHRDAGRAQIYFDQAVNSAPNDCYVLASYAKFLWDAGDEDDSEVE
        WK H+D+ RA+ YF+QAV +AP DCYV ASYA+FLWDA +E++ E E
Subjt:  WKTHRDAGRAQIYFDQAVNSAPNDCYVLASYAKFLWDAGDEDDSEVE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACTCTATCCAAAATCCTTCCGCCGAGCACTCCGGCTCTGAACTCGAAGTTACGTATTCAACGATCATGGCCGGTATTTGATCTGGTTCCGATTGCTCGGTTTCAGAA
GATCGGAGCCGCGTCTACGTCCGTGAATATGGCTTCTAAATCTGCAACATCGTTCTTGTCGCCGATCACTGTGGAAGGATTACGAGCCGAGGTTGAGGATTCGGAGAGAT
CGCGATTCGAGAAGGAATGCGAGGATGAGGATTCGCCGGAGGTTCTGGCCGGTGGCGGAGTTGGGAGCGGCGGAGGCGGCGAAAACTGGTTCGGTGATGGATATGGAGAT
TCAGGTCGGGAGAATAGAAGTATGGAAGAGTATTATCAGAAGATGATCCAAGCATATCCTGGCGATGCTGTAATTCTAACCAATTACGCCAGGTTTCTCAAGGAGGTGAA
AGGGGATGCAGTGAAAGCAGAAGAGTACTGTGAGAGAGCCATTTTGGCGAACCCAAGTGATGAGAATGCTTTATCTCTCTATGGAGATTTGATATGGAAAACTCATCGAG
ATGCGGGTCGTGCTCAGATCTATTTTGATCAAGCTGTTAATTCAGCTCCCAATGACTGTTATGTTCTGGCTTCATATGCTAAGTTTCTTTGGGATGCTGGAGATGAAGAT
GATTCTGAAGTAGAGACCAATATGAAAGCAACAAACTTCTATATGTAA
mRNA sequenceShow/hide mRNA sequence
ATGACTCTATCCAAAATCCTTCCGCCGAGCACTCCGGCTCTGAACTCGAAGTTACGTATTCAACGATCATGGCCGGTATTTGATCTGGTTCCGATTGCTCGGTTTCAGAA
GATCGGAGCCGCGTCTACGTCCGTGAATATGGCTTCTAAATCTGCAACATCGTTCTTGTCGCCGATCACTGTGGAAGGATTACGAGCCGAGGTTGAGGATTCGGAGAGAT
CGCGATTCGAGAAGGAATGCGAGGATGAGGATTCGCCGGAGGTTCTGGCCGGTGGCGGAGTTGGGAGCGGCGGAGGCGGCGAAAACTGGTTCGGTGATGGATATGGAGAT
TCAGGTCGGGAGAATAGAAGTATGGAAGAGTATTATCAGAAGATGATCCAAGCATATCCTGGCGATGCTGTAATTCTAACCAATTACGCCAGGTTTCTCAAGGAGGTGAA
AGGGGATGCAGTGAAAGCAGAAGAGTACTGTGAGAGAGCCATTTTGGCGAACCCAAGTGATGAGAATGCTTTATCTCTCTATGGAGATTTGATATGGAAAACTCATCGAG
ATGCGGGTCGTGCTCAGATCTATTTTGATCAAGCTGTTAATTCAGCTCCCAATGACTGTTATGTTCTGGCTTCATATGCTAAGTTTCTTTGGGATGCTGGAGATGAAGAT
GATTCTGAAGTAGAGACCAATATGAAAGCAACAAACTTCTATATGTAA
Protein sequenceShow/hide protein sequence
MTLSKILPPSTPALNSKLRIQRSWPVFDLVPIARFQKIGAASTSVNMASKSATSFLSPITVEGLRAEVEDSERSRFEKECEDEDSPEVLAGGGVGSGGGGENWFGDGYGD
SGRENRSMEEYYQKMIQAYPGDAVILTNYARFLKEVKGDAVKAEEYCERAILANPSDENALSLYGDLIWKTHRDAGRAQIYFDQAVNSAPNDCYVLASYAKFLWDAGDED
DSEVETNMKATNFYM