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Sed0013115 (gene) of Chayote v1 genome

Gene IDSed0013115
OrganismSechium edule (Chayote v1)
Descriptionubiquitin-like
Genome locationLG07:43177497..43177940
RNA-Seq ExpressionSed0013115
SyntenySed0013115
Gene Ontology termsGO:0005515 - protein binding (molecular function)
InterPro domainsIPR000626 - Ubiquitin-like domain
IPR019956 - Ubiquitin domain
IPR029071 - Ubiquitin-like domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0025481.1 polyubiquitin-like [Cucumis melo var. makuwa]6.4e-2245.32Show/hide
Query:  NNTSNSKSLKGAIRAVQELPDLNEDLLLEAFDFLDKGNNAIIFVTMQAELRRKWLMRKLRPQRLKIIVKIDDNERIKMNILMSDTIEEVKAKICAKMGYL
        NN  +      AI AVQ L D++EDL  EAFDFL+K NNA +F+ M A LR +WL RKL    +KI++K    + I + +    TIEE+K K+  K  YL
Subjt:  NNTSNSKSLKGAIRAVQELPDLNEDLLLEAFDFLDKGNNAIIFVTMQAELRRKWLMRKLRPQRLKIIVKIDDNERIKMNILMSDTIEEVKAKICAKMGYL

Query:  ARNIGLVYMGKQLEHGKSVVDYAILDGSRIH-LRCMCGC
           +  +  GK+LE+G+S+ DY I DGS IH L  +CGC
Subjt:  ARNIGLVYMGKQLEHGKSVVDYAILDGSRIH-LRCMCGC

KAA0025486.1 polyubiquitin-like [Cucumis melo var. makuwa]1.6e-2045.32Show/hide
Query:  NNTSNSKSLKGAIRAVQELPDLNEDLLLEAFDFLDKGNNAIIFVTMQAELRRKWLMRKLRPQRLKIIVKIDDNERIKMNILMSDTIEEVKAKICAKMGYL
        NN   S  L  AI AVQ LPD++EDLL EAFDFL+K  +A +F+ +   LR KWL RKL  +  +I V   D   I +++    TI+E+K K+  K GY 
Subjt:  NNTSNSKSLKGAIRAVQELPDLNEDLLLEAFDFLDKGNNAIIFVTMQAELRRKWLMRKLRPQRLKIIVKIDDNERIKMNILMSDTIEEVKAKICAKMGYL

Query:  ARNIGLVYMGKQLEHGKSVVDYAILDGSRIH-LRCMCGC
           + L+Y GK LE G+S+ DY I DG  IH +  +CGC
Subjt:  ARNIGLVYMGKQLEHGKSVVDYAILDGSRIH-LRCMCGC

XP_008463442.1 PREDICTED: polyubiquitin-like [Cucumis melo]5.4e-2143.24Show/hide
Query:  MESELLFENNNTSNSKSLKGAIRAVQELPDLNEDLLLEAFDFL-DKGNNAIIFVTMQAELRRKWLMRKLRPQ-RLKIIVKIDDNERIKMNILMSDTIEEV
        MES      +N+ N  S++  I+AV+ LPD++EDL+L+AFDFL D  N A +F++M A+LRRKWL++KLRPQ  ++I VK  +  ++ +++L +DTI +V
Subjt:  MESELLFENNNTSNSKSLKGAIRAVQELPDLNEDLLLEAFDFL-DKGNNAIIFVTMQAELRRKWLMRKLRPQ-RLKIIVKIDDNERIKMNILMSDTIEEV

Query:  KAKICAKMGYLARNIGLVYMGKQLEHGKSVVDYAILDGSRIHL-RCMC
        KAKI AK GY  +   LV+ G +L+  +++    +  GS +HL  C+C
Subjt:  KAKICAKMGYLARNIGLVYMGKQLEHGKSVVDYAILDGSRIHL-RCMC

XP_022154970.1 ubiquitin-like isoform X1 [Momordica charantia]8.7e-1940.85Show/hide
Query:  ENNNTSNSKSLKGAIRAVQELPDLNEDLLLEAFDFLDKGNNAIIFVTMQAELRRKWLMRKL-RPQRLKIIVKIDDNERIKMNILMSDTIEEVKAKICAKM
        + + +S S S+   I+AVQ LPD++EDL+L+A DF     N  IF+ +  +LR++WL+R L R  +++I VK+   + +   IL S+TI+ VKAKI A  
Subjt:  ENNNTSNSKSLKGAIRAVQELPDLNEDLLLEAFDFLDKGNNAIIFVTMQAELRRKWLMRKL-RPQRLKIIVKIDDNERIKMNILMSDTIEEVKAKICAKM

Query:  GYLARNIGLVYMGKQLEHGKSVVDYAILDGSRIHL-RCMCGC
        GY      L+Y G+QLE G+++ +Y I  GS +H+   +CGC
Subjt:  GYLARNIGLVYMGKQLEHGKSVVDYAILDGSRIHL-RCMCGC

XP_022154972.1 ubiquitin-like isoform X2 [Momordica charantia]1.1e-1841.13Show/hide
Query:  ENNNTSNSKSLKGAIRAVQELPDLNEDLLLEAFDFLDKGNNAIIFVTMQAELRRKWLMRKLRPQRLKIIVKIDDNERIKMNILMSDTIEEVKAKICAKMG
        + + +S S S+   I+AVQ LPD++EDL+L+A DF     N  IF+ +  +LR++WL+R L P+  +I VK+   + +   IL S+TI+ VKAKI A  G
Subjt:  ENNNTSNSKSLKGAIRAVQELPDLNEDLLLEAFDFLDKGNNAIIFVTMQAELRRKWLMRKLRPQRLKIIVKIDDNERIKMNILMSDTIEEVKAKICAKMG

Query:  YLARNIGLVYMGKQLEHGKSVVDYAILDGSRIHL-RCMCGC
        Y      L+Y G+QLE G+++ +Y I  GS +H+   +CGC
Subjt:  YLARNIGLVYMGKQLEHGKSVVDYAILDGSRIHL-RCMCGC

TrEMBL top hitse value%identityAlignment
A0A1S3CKU5 polyubiquitin-like2.6e-2143.24Show/hide
Query:  MESELLFENNNTSNSKSLKGAIRAVQELPDLNEDLLLEAFDFL-DKGNNAIIFVTMQAELRRKWLMRKLRPQ-RLKIIVKIDDNERIKMNILMSDTIEEV
        MES      +N+ N  S++  I+AV+ LPD++EDL+L+AFDFL D  N A +F++M A+LRRKWL++KLRPQ  ++I VK  +  ++ +++L +DTI +V
Subjt:  MESELLFENNNTSNSKSLKGAIRAVQELPDLNEDLLLEAFDFL-DKGNNAIIFVTMQAELRRKWLMRKLRPQ-RLKIIVKIDDNERIKMNILMSDTIEEV

Query:  KAKICAKMGYLARNIGLVYMGKQLEHGKSVVDYAILDGSRIHL-RCMC
        KAKI AK GY  +   LV+ G +L+  +++    +  GS +HL  C+C
Subjt:  KAKICAKMGYLARNIGLVYMGKQLEHGKSVVDYAILDGSRIHL-RCMC

A0A5A7SML9 Polyubiquitin-like3.1e-2245.32Show/hide
Query:  NNTSNSKSLKGAIRAVQELPDLNEDLLLEAFDFLDKGNNAIIFVTMQAELRRKWLMRKLRPQRLKIIVKIDDNERIKMNILMSDTIEEVKAKICAKMGYL
        NN  +      AI AVQ L D++EDL  EAFDFL+K NNA +F+ M A LR +WL RKL    +KI++K    + I + +    TIEE+K K+  K  YL
Subjt:  NNTSNSKSLKGAIRAVQELPDLNEDLLLEAFDFLDKGNNAIIFVTMQAELRRKWLMRKLRPQRLKIIVKIDDNERIKMNILMSDTIEEVKAKICAKMGYL

Query:  ARNIGLVYMGKQLEHGKSVVDYAILDGSRIH-LRCMCGC
           +  +  GK+LE+G+S+ DY I DGS IH L  +CGC
Subjt:  ARNIGLVYMGKQLEHGKSVVDYAILDGSRIH-LRCMCGC

A0A5D3BMH5 Polyubiquitin-like2.6e-2143.24Show/hide
Query:  MESELLFENNNTSNSKSLKGAIRAVQELPDLNEDLLLEAFDFL-DKGNNAIIFVTMQAELRRKWLMRKLRPQ-RLKIIVKIDDNERIKMNILMSDTIEEV
        MES      +N+ N  S++  I+AV+ LPD++EDL+L+AFDFL D  N A +F++M A+LRRKWL++KLRPQ  ++I VK  +  ++ +++L +DTI +V
Subjt:  MESELLFENNNTSNSKSLKGAIRAVQELPDLNEDLLLEAFDFL-DKGNNAIIFVTMQAELRRKWLMRKLRPQ-RLKIIVKIDDNERIKMNILMSDTIEEV

Query:  KAKICAKMGYLARNIGLVYMGKQLEHGKSVVDYAILDGSRIHL-RCMC
        KAKI AK GY  +   LV+ G +L+  +++    +  GS +HL  C+C
Subjt:  KAKICAKMGYLARNIGLVYMGKQLEHGKSVVDYAILDGSRIHL-RCMC

A0A5D3BQI8 Polyubiquitin-like7.7e-2145.32Show/hide
Query:  NNTSNSKSLKGAIRAVQELPDLNEDLLLEAFDFLDKGNNAIIFVTMQAELRRKWLMRKLRPQRLKIIVKIDDNERIKMNILMSDTIEEVKAKICAKMGYL
        NN   S  L  AI AVQ LPD++EDLL EAFDFL+K  +A +F+ +   LR KWL RKL  +  +I V   D   I +++    TI+E+K K+  K GY 
Subjt:  NNTSNSKSLKGAIRAVQELPDLNEDLLLEAFDFLDKGNNAIIFVTMQAELRRKWLMRKLRPQRLKIIVKIDDNERIKMNILMSDTIEEVKAKICAKMGYL

Query:  ARNIGLVYMGKQLEHGKSVVDYAILDGSRIH-LRCMCGC
           + L+Y GK LE G+S+ DY I DG  IH +  +CGC
Subjt:  ARNIGLVYMGKQLEHGKSVVDYAILDGSRIH-LRCMCGC

A0A6J1DL46 ubiquitin-like isoform X14.2e-1940.85Show/hide
Query:  ENNNTSNSKSLKGAIRAVQELPDLNEDLLLEAFDFLDKGNNAIIFVTMQAELRRKWLMRKL-RPQRLKIIVKIDDNERIKMNILMSDTIEEVKAKICAKM
        + + +S S S+   I+AVQ LPD++EDL+L+A DF     N  IF+ +  +LR++WL+R L R  +++I VK+   + +   IL S+TI+ VKAKI A  
Subjt:  ENNNTSNSKSLKGAIRAVQELPDLNEDLLLEAFDFLDKGNNAIIFVTMQAELRRKWLMRKL-RPQRLKIIVKIDDNERIKMNILMSDTIEEVKAKICAKM

Query:  GYLARNIGLVYMGKQLEHGKSVVDYAILDGSRIHL-RCMCGC
        GY      L+Y G+QLE G+++ +Y I  GS +H+   +CGC
Subjt:  GYLARNIGLVYMGKQLEHGKSVVDYAILDGSRIHL-RCMCGC

SwissProt top hitse value%identityAlignment
P0CH10 Ubiquitin-60S ribosomal protein L408.8e-0642.03Show/hide
Query:  LKIIVKIDDNERIKMNILMSDTIEEVKAKICAKMGYLARNIGLVYMGKQLEHGKSVVDYAILDGSRIHL
        ++I VK    + I + +  SDTIE VKAKI  K G       L++ GKQLE G+++ DY I   S +HL
Subjt:  LKIIVKIDDNERIKMNILMSDTIEEVKAKICAKMGYLARNIGLVYMGKQLEHGKSVVDYAILDGSRIHL

P0CH11 Ubiquitin-60S ribosomal protein L408.8e-0642.03Show/hide
Query:  LKIIVKIDDNERIKMNILMSDTIEEVKAKICAKMGYLARNIGLVYMGKQLEHGKSVVDYAILDGSRIHL
        ++I VK    + I + +  SDTIE VKAKI  K G       L++ GKQLE G+++ DY I   S +HL
Subjt:  LKIIVKIDDNERIKMNILMSDTIEEVKAKICAKMGYLARNIGLVYMGKQLEHGKSVVDYAILDGSRIHL

P0CH27 Ubiquitin-60S ribosomal protein L408.8e-0642.03Show/hide
Query:  LKIIVKIDDNERIKMNILMSDTIEEVKAKICAKMGYLARNIGLVYMGKQLEHGKSVVDYAILDGSRIHL
        ++I VK    + I + +  SDTIE VKAKI  K G       L++ GKQLE G+++ DY I   S +HL
Subjt:  LKIIVKIDDNERIKMNILMSDTIEEVKAKICAKMGYLARNIGLVYMGKQLEHGKSVVDYAILDGSRIHL

P21899 Ubiquitin-60S ribosomal protein L406.7e-0642.03Show/hide
Query:  LKIIVKIDDNERIKMNILMSDTIEEVKAKICAKMGYLARNIGLVYMGKQLEHGKSVVDYAILDGSRIHL
        ++I VK    + I + +  SDTIE VKAKI  K G       L++ GKQLE G+++ DY I   S +HL
Subjt:  LKIIVKIDDNERIKMNILMSDTIEEVKAKICAKMGYLARNIGLVYMGKQLEHGKSVVDYAILDGSRIHL

Q39256 Polyubiquitin 87.9e-0741.33Show/hide
Query:  LKIIVKIDDNERIKMNILMSDTIEEVKAKICAKMGYLARNIGLVYMGKQLEHGKSVVDYAILDGSRIHLRC-MCG
        ++I V+    + I + +  SDTI+ VKAKI  K G L R   L++ GKQLE G+++ DY I   S +HL   +CG
Subjt:  LKIIVKIDDNERIKMNILMSDTIEEVKAKICAKMGYLARNIGLVYMGKQLEHGKSVVDYAILDGSRIHLRC-MCG

Arabidopsis top hitse value%identityAlignment
AT2G24960.1 unknown protein4.3e-0850Show/hide
Query:  AIRAVQELPDLNEDLLLEAFDFLDKGNNAIIFVTMQAELRRKWLMRKLRP
        A+ A+Q LPD++++LLL+A D L+    A  F+ +   LRRKWL+RKLRP
Subjt:  AIRAVQELPDLNEDLLLEAFDFLDKGNNAIIFVTMQAELRRKWLMRKLRP

AT2G24960.2 unknown protein4.3e-0850Show/hide
Query:  AIRAVQELPDLNEDLLLEAFDFLDKGNNAIIFVTMQAELRRKWLMRKLRP
        A+ A+Q LPD++++LLL+A D L+    A  F+ +   LRRKWL+RKLRP
Subjt:  AIRAVQELPDLNEDLLLEAFDFLDKGNNAIIFVTMQAELRRKWLMRKLRP

AT3G09790.1 ubiquitin 85.6e-0841.33Show/hide
Query:  LKIIVKIDDNERIKMNILMSDTIEEVKAKICAKMGYLARNIGLVYMGKQLEHGKSVVDYAILDGSRIHLRC-MCG
        ++I V+    + I + +  SDTI+ VKAKI  K G L R   L++ GKQLE G+++ DY I   S +HL   +CG
Subjt:  LKIIVKIDDNERIKMNILMSDTIEEVKAKICAKMGYLARNIGLVYMGKQLEHGKSVVDYAILDGSRIHLRC-MCG

AT4G02210.1 unknown protein8.7e-0940.68Show/hide
Query:  SNSKSLKGAIRAVQELPDLNEDLLLEAFDFLDKGNNAIIFVTMQAELRRKWLMRKLRPQ
        + + S++  + A+Q LPD++++L+L+A D L+    A  F+ +  +LR+KWL+RKLRPQ
Subjt:  SNSKSLKGAIRAVQELPDLNEDLLLEAFDFLDKGNNAIIFVTMQAELRRKWLMRKLRPQ

AT4G02210.2 unknown protein8.7e-0940.68Show/hide
Query:  SNSKSLKGAIRAVQELPDLNEDLLLEAFDFLDKGNNAIIFVTMQAELRRKWLMRKLRPQ
        + + S++  + A+Q LPD++++L+L+A D L+    A  F+ +  +LR+KWL+RKLRPQ
Subjt:  SNSKSLKGAIRAVQELPDLNEDLLLEAFDFLDKGNNAIIFVTMQAELRRKWLMRKLRPQ


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAAGTGAACTTCTTTTTGAGAACAATAACACCTCAAACTCCAAGTCCCTCAAGGGCGCAATTCGGGCCGTGCAGGAACTACCCGACCTCAACGAAGACCTTCTTCT
CGAAGCCTTTGATTTTCTAGACAAGGGAAACAATGCCATAATCTTTGTAACAATGCAAGCCGAACTACGAAGAAAGTGGCTGATGAGAAAACTTCGTCCACAACGGTTGA
AGATCATCGTCAAAATTGACGACAATGAGAGAATAAAAATGAATATTTTAATGTCGGACACAATCGAGGAAGTGAAGGCTAAAATCTGTGCAAAGATGGGATATCTTGCA
AGGAATATAGGGCTGGTTTATATGGGAAAGCAGCTTGAACATGGCAAAAGTGTAGTAGACTATGCCATCTTGGATGGCTCTCGTATTCATTTACGTTGTATGTGTGGTTG
TTAA
mRNA sequenceShow/hide mRNA sequence
ATGGAAAGTGAACTTCTTTTTGAGAACAATAACACCTCAAACTCCAAGTCCCTCAAGGGCGCAATTCGGGCCGTGCAGGAACTACCCGACCTCAACGAAGACCTTCTTCT
CGAAGCCTTTGATTTTCTAGACAAGGGAAACAATGCCATAATCTTTGTAACAATGCAAGCCGAACTACGAAGAAAGTGGCTGATGAGAAAACTTCGTCCACAACGGTTGA
AGATCATCGTCAAAATTGACGACAATGAGAGAATAAAAATGAATATTTTAATGTCGGACACAATCGAGGAAGTGAAGGCTAAAATCTGTGCAAAGATGGGATATCTTGCA
AGGAATATAGGGCTGGTTTATATGGGAAAGCAGCTTGAACATGGCAAAAGTGTAGTAGACTATGCCATCTTGGATGGCTCTCGTATTCATTTACGTTGTATGTGTGGTTG
TTAA
Protein sequenceShow/hide protein sequence
MESELLFENNNTSNSKSLKGAIRAVQELPDLNEDLLLEAFDFLDKGNNAIIFVTMQAELRRKWLMRKLRPQRLKIIVKIDDNERIKMNILMSDTIEEVKAKICAKMGYLA
RNIGLVYMGKQLEHGKSVVDYAILDGSRIHLRCMCGC