; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Sed0013198 (gene) of Chayote v1 genome

Gene IDSed0013198
OrganismSechium edule (Chayote v1)
DescriptionRibosomal RNA-processing protein 40
Genome locationLG08:724700..729127
RNA-Seq ExpressionSed0013198
SyntenySed0013198
Gene Ontology termsGO:0000467 - exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) (biological process)
GO:0034427 - nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5' (biological process)
GO:0034475 - U4 snRNA 3'-end processing (biological process)
GO:0043928 - exonucleolytic catabolism of deadenylated mRNA (biological process)
GO:0071034 - CUT catabolic process (biological process)
GO:0071035 - nuclear polyadenylation-dependent rRNA catabolic process (biological process)
GO:0071038 - nuclear polyadenylation-dependent tRNA catabolic process (biological process)
GO:0071051 - polyadenylation-dependent snoRNA 3'-end processing (biological process)
GO:0000176 - nuclear exosome (RNase complex) (cellular component)
GO:0000177 - cytoplasmic exosome (RNase complex) (cellular component)
GO:0003723 - RNA binding (molecular function)
InterPro domainsIPR004088 - K Homology domain, type 1
IPR012340 - Nucleic acid-binding, OB-fold
IPR026699 - Exosome complex RNA-binding protein 1/RRP40/RRP4
IPR036612 - K Homology domain, type 1 superfamily
IPR037319 - Rrp40, S1 domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6587472.1 Protein KINESIN LIGHT CHAIN-RELATED 3, partial [Cucurbita argyrosperma subsp. sororia]1.1e-12494.24Show/hide
Query:  MVEKSSSSSSTLVDQPVVPGDVVLDLSNMANETIRLVGGLRQDHDAISVAKVGKLRFSKPNKYWVESSQKRYVPCAEDCVLGIVVDSRADNFLVDIKGPS
        MVEKSSSSSS LVDQPVVPGDVVLDLSNM NETI+L GGLRQDHDAISVAKVGKLRFSKPNKYWVESSQKRYVPCAEDCVLGIVVDSR+DNFLVDIKGPS
Subjt:  MVEKSSSSSSTLVDQPVVPGDVVLDLSNMANETIRLVGGLRQDHDAISVAKVGKLRFSKPNKYWVESSQKRYVPCAEDCVLGIVVDSRADNFLVDIKGPS

Query:  LASLPVLAFEGGTRRNIPKFEMGALLYVRVVKVNPGMNPELACTDANGKAAGFGLLKDGYMFECSTGLSRVLVSSPTCPVLESLGKKLSFETAVGINGRV
        LASLPVLAFEGGTRRNIPKFEMGALLYVRVVKVNPGMNPELACTDA+GKAAGFGLLKDGY+F+CSTGLSR+L+SSPTCPVLESLGKKLSFETAVGINGRV
Subjt:  LASLPVLAFEGGTRRNIPKFEMGALLYVRVVKVNPGMNPELACTDANGKAAGFGLLKDGYMFECSTGLSRVLVSSPTCPVLESLGKKLSFETAVGINGRV

Query:  WVNADSPSSTIVVSNAIMSSETLTGVQQRIMVDKLLHNLKLSS
        WVNADSPS+TIVVSNAIM+SETL+GVQQRIMVDKLL+NLKLSS
Subjt:  WVNADSPSSTIVVSNAIMSSETLTGVQQRIMVDKLLHNLKLSS

KAG6589448.1 Protein KINESIN LIGHT CHAIN-RELATED 3, partial [Cucurbita argyrosperma subsp. sororia]1.3e-12393Show/hide
Query:  MVEKSSSSSSTLVDQPVVPGDVVLDLSNMANETIRLVGGLRQDHDAISVAKVGKLRFSKPNKYWVESSQKRYVPCAEDCVLGIVVDSRADNFLVDIKGPS
        MVEKSSSSSSTLVDQPVVPGDVVLDLSNMANETI+L GGLRQDHDAISV+KVGKLRFSKPNKYWVESSQKRYVPC EDCVLGIVVDSRADNFLVDIKGP+
Subjt:  MVEKSSSSSSTLVDQPVVPGDVVLDLSNMANETIRLVGGLRQDHDAISVAKVGKLRFSKPNKYWVESSQKRYVPCAEDCVLGIVVDSRADNFLVDIKGPS

Query:  LASLPVLAFEGGTRRNIPKFEMGALLYVRVVKVNPGMNPELACTDANGKAAGFGLLKDGYMFECSTGLSRVLVSSPTCPVLESLGKKLSFETAVGINGRV
        LA LPVLAFEGGTRRNIPKFEMGALLYVRVVK NPGMNPELACTDA+GKAAGFGLLKDGYMFECSTGLSR+L+SSPTCPVLES GKKLSFETAVG+NGRV
Subjt:  LASLPVLAFEGGTRRNIPKFEMGALLYVRVVKVNPGMNPELACTDANGKAAGFGLLKDGYMFECSTGLSRVLVSSPTCPVLESLGKKLSFETAVGINGRV

Query:  WVNADSPSSTIVVSNAIMSSETLTGVQQRIMVDKLLHNLKLSS
        WVNADSPS+TIVVSNAI++SETL+GVQQRIMVDKLL+NLKLSS
Subjt:  WVNADSPSSTIVVSNAIMSSETLTGVQQRIMVDKLLHNLKLSS

KAG7023129.1 putative exosome complex component rrp40, partial [Cucurbita argyrosperma subsp. argyrosperma]1.3e-12393Show/hide
Query:  MVEKSSSSSSTLVDQPVVPGDVVLDLSNMANETIRLVGGLRQDHDAISVAKVGKLRFSKPNKYWVESSQKRYVPCAEDCVLGIVVDSRADNFLVDIKGPS
        MVEKSSSSSSTLVDQPVVPGDVVLDLSNMANETI+L GGLRQDHDAISV+KVGKLRFSKPNKYWVESSQKRYVPC EDCVLGIVVDSRADNFLVDIKGP+
Subjt:  MVEKSSSSSSTLVDQPVVPGDVVLDLSNMANETIRLVGGLRQDHDAISVAKVGKLRFSKPNKYWVESSQKRYVPCAEDCVLGIVVDSRADNFLVDIKGPS

Query:  LASLPVLAFEGGTRRNIPKFEMGALLYVRVVKVNPGMNPELACTDANGKAAGFGLLKDGYMFECSTGLSRVLVSSPTCPVLESLGKKLSFETAVGINGRV
        LA LPVLAFEGGTRRNIPKFEMGALLYVRVVK NPGMNPELACTDA+GKAAGFGLLKDGYMFECSTGLSR+L+SSPTCPVLES GKKLSFETAVG+NGRV
Subjt:  LASLPVLAFEGGTRRNIPKFEMGALLYVRVVKVNPGMNPELACTDANGKAAGFGLLKDGYMFECSTGLSRVLVSSPTCPVLESLGKKLSFETAVGINGRV

Query:  WVNADSPSSTIVVSNAIMSSETLTGVQQRIMVDKLLHNLKLSS
        WVNADSPS+TIVVSNAI++SETL+GVQQRIMVDKLL+NLKLSS
Subjt:  WVNADSPSSTIVVSNAIMSSETLTGVQQRIMVDKLLHNLKLSS

XP_022921727.1 putative exosome complex component rrp40 [Cucurbita moschata]2.2e-12392.59Show/hide
Query:  MVEKSSSSSSTLVDQPVVPGDVVLDLSNMANETIRLVGGLRQDHDAISVAKVGKLRFSKPNKYWVESSQKRYVPCAEDCVLGIVVDSRADNFLVDIKGPS
        MVEKSSSSSSTLVDQPVVPGDVVLDLSNMANET++L GGLRQDHDAISV+KVGKLRFSKPNKYWVESSQKRYVPC EDCVLGIVVDSRADNFLVDIKGP+
Subjt:  MVEKSSSSSSTLVDQPVVPGDVVLDLSNMANETIRLVGGLRQDHDAISVAKVGKLRFSKPNKYWVESSQKRYVPCAEDCVLGIVVDSRADNFLVDIKGPS

Query:  LASLPVLAFEGGTRRNIPKFEMGALLYVRVVKVNPGMNPELACTDANGKAAGFGLLKDGYMFECSTGLSRVLVSSPTCPVLESLGKKLSFETAVGINGRV
        LA LPVLAFEGGTRRNIPKFEMGALLYVRVVK NPGMNPELACTDA+GKAAGFGLLKDGYMFECSTGLSR+L+SSPTCPVLES GKKLSFETAVG+NGRV
Subjt:  LASLPVLAFEGGTRRNIPKFEMGALLYVRVVKVNPGMNPELACTDANGKAAGFGLLKDGYMFECSTGLSRVLVSSPTCPVLESLGKKLSFETAVGINGRV

Query:  WVNADSPSSTIVVSNAIMSSETLTGVQQRIMVDKLLHNLKLSS
        WVNADSPS+TIVVSNAI++SETL+GVQQRIMVDKLL+NLKLSS
Subjt:  WVNADSPSSTIVVSNAIMSSETLTGVQQRIMVDKLLHNLKLSS

XP_022925902.1 putative exosome complex component rrp40 [Cucurbita moschata]1.1e-12494.24Show/hide
Query:  MVEKSSSSSSTLVDQPVVPGDVVLDLSNMANETIRLVGGLRQDHDAISVAKVGKLRFSKPNKYWVESSQKRYVPCAEDCVLGIVVDSRADNFLVDIKGPS
        MVEKSSSSSS LVDQPVVPGDVVLDLSNM NETI+L GGLRQDHDAISVAKVGKLRFSKPNKYWVESSQKRYVPCAEDCVLGIVVDSR+DNFLVDIKGPS
Subjt:  MVEKSSSSSSTLVDQPVVPGDVVLDLSNMANETIRLVGGLRQDHDAISVAKVGKLRFSKPNKYWVESSQKRYVPCAEDCVLGIVVDSRADNFLVDIKGPS

Query:  LASLPVLAFEGGTRRNIPKFEMGALLYVRVVKVNPGMNPELACTDANGKAAGFGLLKDGYMFECSTGLSRVLVSSPTCPVLESLGKKLSFETAVGINGRV
        LASLPVLAFEGGTRRNIPKFEMGALLYVRVVKVNPGMNPELACTDA+GKAAGFGLLKDGY+F+CSTGLSR+L+SSPTCPVLESLGKKLSFETAVGINGRV
Subjt:  LASLPVLAFEGGTRRNIPKFEMGALLYVRVVKVNPGMNPELACTDANGKAAGFGLLKDGYMFECSTGLSRVLVSSPTCPVLESLGKKLSFETAVGINGRV

Query:  WVNADSPSSTIVVSNAIMSSETLTGVQQRIMVDKLLHNLKLSS
        WVNADSPS+TIVVSNAIM+SETL+GVQQRIMVDKLL+NLKLSS
Subjt:  WVNADSPSSTIVVSNAIMSSETLTGVQQRIMVDKLLHNLKLSS

TrEMBL top hitse value%identityAlignment
A0A0A0LP58 Ribosomal RNA-processing protein 402.6e-12292.59Show/hide
Query:  MVEKSSSSSSTLVDQPVVPGDVVLDLSNMANETIRLVGGLRQDHDAISVAKVGKLRFSKPNKYWVESSQKRYVPCAEDCVLGIVVDSRADNFLVDIKGPS
        MVEK SSSSSTLVDQPVVPGDVVLDLSNMANETI+L GGLRQD DAISV+KVGKLRFSKPNKYWVESSQKRYVPCAEDCVLGIV+DSRADNFLVDIKGPS
Subjt:  MVEKSSSSSSTLVDQPVVPGDVVLDLSNMANETIRLVGGLRQDHDAISVAKVGKLRFSKPNKYWVESSQKRYVPCAEDCVLGIVVDSRADNFLVDIKGPS

Query:  LASLPVLAFEGGTRRNIPKFEMGALLYVRVVKVNPGMNPELACTDANGKAAGFGLLKDGYMFECSTGLSRVLVSSPTCPVLESLGKKLSFETAVGINGRV
        LA LPVLAFEGGTRRNIPKFEMGALLYVRVVKVNPGMNPELACTDA+GKAAGFGLLKDGYMFECSTGLSR+L+SSP+CPVLESLGKKLSFETAVG+NGRV
Subjt:  LASLPVLAFEGGTRRNIPKFEMGALLYVRVVKVNPGMNPELACTDANGKAAGFGLLKDGYMFECSTGLSRVLVSSPTCPVLESLGKKLSFETAVGINGRV

Query:  WVNADSPSSTIVVSNAIMSSETLTGVQQRIMVDKLLHNLKLSS
        WVNADSPS+ IVVSNAI++SETL+GVQQRIMVDKLL NLKLSS
Subjt:  WVNADSPSSTIVVSNAIMSSETLTGVQQRIMVDKLLHNLKLSS

A0A6J1E1A1 Ribosomal RNA-processing protein 401.0e-12392.59Show/hide
Query:  MVEKSSSSSSTLVDQPVVPGDVVLDLSNMANETIRLVGGLRQDHDAISVAKVGKLRFSKPNKYWVESSQKRYVPCAEDCVLGIVVDSRADNFLVDIKGPS
        MVEKSSSSSSTLVDQPVVPGDVVLDLSNMANET++L GGLRQDHDAISV+KVGKLRFSKPNKYWVESSQKRYVPC EDCVLGIVVDSRADNFLVDIKGP+
Subjt:  MVEKSSSSSSTLVDQPVVPGDVVLDLSNMANETIRLVGGLRQDHDAISVAKVGKLRFSKPNKYWVESSQKRYVPCAEDCVLGIVVDSRADNFLVDIKGPS

Query:  LASLPVLAFEGGTRRNIPKFEMGALLYVRVVKVNPGMNPELACTDANGKAAGFGLLKDGYMFECSTGLSRVLVSSPTCPVLESLGKKLSFETAVGINGRV
        LA LPVLAFEGGTRRNIPKFEMGALLYVRVVK NPGMNPELACTDA+GKAAGFGLLKDGYMFECSTGLSR+L+SSPTCPVLES GKKLSFETAVG+NGRV
Subjt:  LASLPVLAFEGGTRRNIPKFEMGALLYVRVVKVNPGMNPELACTDANGKAAGFGLLKDGYMFECSTGLSRVLVSSPTCPVLESLGKKLSFETAVGINGRV

Query:  WVNADSPSSTIVVSNAIMSSETLTGVQQRIMVDKLLHNLKLSS
        WVNADSPS+TIVVSNAI++SETL+GVQQRIMVDKLL+NLKLSS
Subjt:  WVNADSPSSTIVVSNAIMSSETLTGVQQRIMVDKLLHNLKLSS

A0A6J1ECW1 Ribosomal RNA-processing protein 405.5e-12594.24Show/hide
Query:  MVEKSSSSSSTLVDQPVVPGDVVLDLSNMANETIRLVGGLRQDHDAISVAKVGKLRFSKPNKYWVESSQKRYVPCAEDCVLGIVVDSRADNFLVDIKGPS
        MVEKSSSSSS LVDQPVVPGDVVLDLSNM NETI+L GGLRQDHDAISVAKVGKLRFSKPNKYWVESSQKRYVPCAEDCVLGIVVDSR+DNFLVDIKGPS
Subjt:  MVEKSSSSSSTLVDQPVVPGDVVLDLSNMANETIRLVGGLRQDHDAISVAKVGKLRFSKPNKYWVESSQKRYVPCAEDCVLGIVVDSRADNFLVDIKGPS

Query:  LASLPVLAFEGGTRRNIPKFEMGALLYVRVVKVNPGMNPELACTDANGKAAGFGLLKDGYMFECSTGLSRVLVSSPTCPVLESLGKKLSFETAVGINGRV
        LASLPVLAFEGGTRRNIPKFEMGALLYVRVVKVNPGMNPELACTDA+GKAAGFGLLKDGY+F+CSTGLSR+L+SSPTCPVLESLGKKLSFETAVGINGRV
Subjt:  LASLPVLAFEGGTRRNIPKFEMGALLYVRVVKVNPGMNPELACTDANGKAAGFGLLKDGYMFECSTGLSRVLVSSPTCPVLESLGKKLSFETAVGINGRV

Query:  WVNADSPSSTIVVSNAIMSSETLTGVQQRIMVDKLLHNLKLSS
        WVNADSPS+TIVVSNAIM+SETL+GVQQRIMVDKLL+NLKLSS
Subjt:  WVNADSPSSTIVVSNAIMSSETLTGVQQRIMVDKLLHNLKLSS

A0A6J1I8H3 Ribosomal RNA-processing protein 405.2e-12393Show/hide
Query:  MVEKSSSSSSTLVDQPVVPGDVVLDLSNMANETIRLVGGLRQDHDAISVAKVGKLRFSKPNKYWVESSQKRYVPCAEDCVLGIVVDSRADNFLVDIKGPS
        MVEKSSSSSS LVDQPVVPGDVVLDLSNM NETI+L GGLRQDHDAISVAKVGKLRFSKPNKYWVESSQKRYVPCAEDCVLGIVVDSR+DNFLVDIKGPS
Subjt:  MVEKSSSSSSTLVDQPVVPGDVVLDLSNMANETIRLVGGLRQDHDAISVAKVGKLRFSKPNKYWVESSQKRYVPCAEDCVLGIVVDSRADNFLVDIKGPS

Query:  LASLPVLAFEGGTRRNIPKFEMGALLYVRVVKVNPGMNPELACTDANGKAAGFGLLKDGYMFECSTGLSRVLVSSPTCPVLESLGKKLSFETAVGINGRV
        LA LPVLAFEGGTRRNIPKFEMGALLYVRVVK NPGMNPELACTDA+GKAAGFG LKDGY+F+CSTGLSR+L+SSPTCPVLESLGKKLSFETAVGINGRV
Subjt:  LASLPVLAFEGGTRRNIPKFEMGALLYVRVVKVNPGMNPELACTDANGKAAGFGLLKDGYMFECSTGLSRVLVSSPTCPVLESLGKKLSFETAVGINGRV

Query:  WVNADSPSSTIVVSNAIMSSETLTGVQQRIMVDKLLHNLKLSS
        WVNADSPS+TIVVSNAIM+SETL+GVQQRIMVDKLL+NLKLSS
Subjt:  WVNADSPSSTIVVSNAIMSSETLTGVQQRIMVDKLLHNLKLSS

A0A6J1JLH7 Ribosomal RNA-processing protein 402.6e-12291.36Show/hide
Query:  MVEKSSSSSSTLVDQPVVPGDVVLDLSNMANETIRLVGGLRQDHDAISVAKVGKLRFSKPNKYWVESSQKRYVPCAEDCVLGIVVDSRADNFLVDIKGPS
        MVEKSSSSSSTLVDQPVVPGDVVLDLSNMANETI+L GGLRQDHDAISV+KVGKLRF+KPNKYWVESSQKRYVPC EDCVLGIVVDSR+DNFLVDIKGP+
Subjt:  MVEKSSSSSSTLVDQPVVPGDVVLDLSNMANETIRLVGGLRQDHDAISVAKVGKLRFSKPNKYWVESSQKRYVPCAEDCVLGIVVDSRADNFLVDIKGPS

Query:  LASLPVLAFEGGTRRNIPKFEMGALLYVRVVKVNPGMNPELACTDANGKAAGFGLLKDGYMFECSTGLSRVLVSSPTCPVLESLGKKLSFETAVGINGRV
        LA LPVLAFEGGTRRNIPKFEMGALLYVRVVK NPGMNPELACTDA+GKAAGFGLLKDGYMFECSTGLSR+L+SSPTCPVLES GKKLSFETAVG+NGRV
Subjt:  LASLPVLAFEGGTRRNIPKFEMGALLYVRVVKVNPGMNPELACTDANGKAAGFGLLKDGYMFECSTGLSRVLVSSPTCPVLESLGKKLSFETAVGINGRV

Query:  WVNADSPSSTIVVSNAIMSSETLTGVQQRIMVDKLLHNLKLSS
        WVNADSPS+TIVVSNA+++SETL+GVQQRIMVD LL+NLKLSS
Subjt:  WVNADSPSSTIVVSNAIMSSETLTGVQQRIMVDKLLHNLKLSS

SwissProt top hitse value%identityAlignment
Q3T0E1 Exosome complex component RRP408.4e-3838.96Show/hide
Query:  DQPVVPGDVVLDLSNMANETIRLV--GGLRQDHDAISVAKVGKLRFSKPNK------YWVESSQKRYVPCAEDCVLGIVVDSRADNFLVDIKGPSLASLP
        D P   G+  L L+  A    R+V   GLR+  D + V K G+LR  +P        YWV+S QKRYVP   D V+GIV     D F VD+ G   ASL 
Subjt:  DQPVVPGDVVLDLSNMANETIRLV--GGLRQDHDAISVAKVGKLRFSKPNK------YWVESSQKRYVPCAEDCVLGIVVDSRADNFLVDIKGPSLASLP

Query:  VLAFEGGTRRNIPKFEMGALLYVRVVKVNPGMNPELACTDANGKAAGFGLL-KDGYMFECSTGLSRVLVSSPTCPVLESLGKKLSFETAVGINGRVWVNA
         LAFEG T+RN P  ++G L+Y + V  N  M PE+ C D+ G+A G G++ +DG +F+ + GL R L+ +P C +L+ +GK    E   G+NGR+WV A
Subjt:  VLAFEGGTRRNIPKFEMGALLYVRVVKVNPGMNPELACTDANGKAAGFGLL-KDGYMFECSTGLSRVLVSSPTCPVLESLGKKLSFETAVGINGRVWVNA

Query:  DSPSSTIVVSNAIMSSETLTGVQQRIMVDKL
         +   T++++N + + E +T  Q++ +  +L
Subjt:  DSPSSTIVVSNAIMSSETLTGVQQRIMVDKL

Q7KWX9 Putative exosome complex component rrp402.4e-4545.75Show/hide
Query:  TLVDQPVVPGDVVLDLSNMANETIRLVGGLRQDHDAISVAKVGKLRFSKPNK-YWVESSQKRYVPCAEDCVLGIVVDSRADNFLVDIKGPSLASLPVLAF
        TL DQ VVPGDV+  + ++    +R+  GL Q  D +   K G LR+SK ++ YW+E+ QKRYVP  ED V+G +++  A++F VDI     A L   +F
Subjt:  TLVDQPVVPGDVVLDLSNMANETIRLVGGLRQDHDAISVAKVGKLRFSKPNK-YWVESSQKRYVPCAEDCVLGIVVDSRADNFLVDIKGPSLASLPVLAF

Query:  EGGTRRNIPKFEMGALLYVRVVKVNPGMNPELACTDANGKAAGFGLLKDGYMFECSTGLSRVLVSSPTCPVLESLGKKLSFETAVGINGRVWVNADSPSS
        EG T+ N P   +G L+Y RV   N  M PE+ C     KA GFG L  GYM  CS GLS  L+S   C +L+ LGK + +E AVG+NGRVW+N+ S  +
Subjt:  EGGTRRNIPKFEMGALLYVRVVKVNPGMNPELACTDANGKAAGFGLLKDGYMFECSTGLSRVLVSSPTCPVLESLGKKLSFETAVGINGRVWVNADSPSS

Query:  TIVVSNAIMSSE
        TIVVSN I +S+
Subjt:  TIVVSNAIMSSE

Q7TQK4 Exosome complex component RRP404.9e-3839.29Show/hide
Query:  GDVVLDLSNMANETIRLV--GGLRQDHDAISVAKVGKLRFSKPN-----KYWVESSQKRYVPCAEDCVLGIVVDSRADNFLVDIKGPSLASLPVLAFEGG
        G+  L L+  A   +R+V   GLR+  D + V K G+LR  +P+      YWV+S QKRYVP   D V+GIV+    D F VD+ G   ASL  LAFEG 
Subjt:  GDVVLDLSNMANETIRLV--GGLRQDHDAISVAKVGKLRFSKPN-----KYWVESSQKRYVPCAEDCVLGIVVDSRADNFLVDIKGPSLASLPVLAFEGG

Query:  TRRNIPKFEMGALLYVRVVKVNPGMNPELACTDANGKAAGFGLL-KDGYMFECSTGLSRVLVSSPTCPVLESLGKKLSFETAVGINGRVWVNADSPSSTI
        T+RN P  ++G L+Y + V  N  M PE+ C D+ G+A G G++ +DG +F+ + GL R L+ +P C +++ LGK    E   G+NGR+WV A +   T+
Subjt:  TRRNIPKFEMGALLYVRVVKVNPGMNPELACTDANGKAAGFGLL-KDGYMFECSTGLSRVLVSSPTCPVLESLGKKLSFETAVGINGRVWVNADSPSSTI

Query:  VVSNAIMSSETLTGVQQRIMVDKL
        +++N + + E +T  Q++ +  +L
Subjt:  VVSNAIMSSETLTGVQQRIMVDKL

Q8IPX7 Exosome complex component RRP404.5e-3937.18Show/hide
Query:  SSSSTLVDQPVVPGDVVLDLSNMANETIRLVG-GLRQDHDAISVAKVGKLRFSKPNKYWVESSQKRYVPCAEDCVLGIVVDSRADNFLVDIKGPSLASLP
        S++ST+    V+PG+ +  +  +A     ++G GLR+  D +  +K G LR  +P  +WV++ Q+RY+P   D +LGIV     D + VDI     AS+ 
Subjt:  SSSSTLVDQPVVPGDVVLDLSNMANETIRLVG-GLRQDHDAISVAKVGKLRFSKPNKYWVESSQKRYVPCAEDCVLGIVVDSRADNFLVDIKGPSLASLP

Query:  VLAFEGGTRRNIPKFEMGALLYVRVVKVNPGMNPELACTDANGKAAGFGLLKDGYMFECSTGLSRVLVSSPTCPVLESLGKKLSFETAVGINGRVWVNAD
         LAFE  +++N P    G L+Y RV+  +  + PEL C ++ GK+   G+L DG+ F+CS  L R+L+    CPVL +L ++L +E AVG+NGR+W+ A 
Subjt:  VLAFEGGTRRNIPKFEMGALLYVRVVKVNPGMNPELACTDANGKAAGFGLLKDGYMFECSTGLSRVLVSSPTCPVLESLGKKLSFETAVGINGRVWVNAD

Query:  SPSSTIVVSNAIMSSETLTGVQQRIMVDKLLHNL
        S   T+ ++NAI + E  +G  +   +DK+  NL
Subjt:  SPSSTIVVSNAIMSSETLTGVQQRIMVDKLLHNL

Q9NQT5 Exosome complex component RRP401.9e-3738.43Show/hide
Query:  PGDVV---LDLSNMANETIRLV--GGLRQDHDAISVAKVGKLRFSKPNK------YWVESSQKRYVPCAEDCVLGIVVDSRADNFLVDIKGPSLASLPVL
        PG  V   L L+  A   +R+V   GLR+  D + V K G+LR  +P        YWV+S QKRYVP   D V+GIV     D F VD+ G   ASL  L
Subjt:  PGDVV---LDLSNMANETIRLV--GGLRQDHDAISVAKVGKLRFSKPNK------YWVESSQKRYVPCAEDCVLGIVVDSRADNFLVDIKGPSLASLPVL

Query:  AFEGGTRRNIPKFEMGALLYVRVVKVNPGMNPELACTDANGKAAGFGLL-KDGYMFECSTGLSRVLVSSPTCPVLESLGKKLSFETAVGINGRVWVNADS
        +FEG T+RN P  ++G L+Y + V  N  M PE+ C D+ G+A G G++ +DG +F+ + GL R L+ +P C +++ +GK    E   G+NGR+WV A +
Subjt:  AFEGGTRRNIPKFEMGALLYVRVVKVNPGMNPELACTDANGKAAGFGLL-KDGYMFECSTGLSRVLVSSPTCPVLESLGKKLSFETAVGINGRVWVNADS

Query:  PSSTIVVSNAIMSSETLTGVQQRIMVDKL
           T++++N + + E +T  Q++ +  +L
Subjt:  PSSTIVVSNAIMSSETLTGVQQRIMVDKL

Arabidopsis top hitse value%identityAlignment
AT2G25355.1 PNAS-3 related1.9e-9370.51Show/hide
Query:  SSSSSTLVDQPVVPGDVVLDLSNMANETIRLVGGLRQDHDAISVAKVGKLRFSKPNKYWVESSQKRYVPCAEDCVLGIVVDSRADNFLVDIKGPSLASLP
        S+S ++L+DQ VVPGDVVLDLSNM N+TI+L  GLRQD++ ISV + GKLR+SKPNKYWVESS KRYVP  ED VLGIVVD + +N+ +DIKGP LA LP
Subjt:  SSSSSTLVDQPVVPGDVVLDLSNMANETIRLVGGLRQDHDAISVAKVGKLRFSKPNKYWVESSQKRYVPCAEDCVLGIVVDSRADNFLVDIKGPSLASLP

Query:  VLAFEGGTRRNIPKFEMGALLYVRVVKVNPGMNPELACTDANGKAAGFGLLKDGYMFECSTGLSRVLVSSPTCPVLESLGKKLSFETAVGINGRVWVNAD
        VLAFEG  RRN PKFE+  LLY RVVK N GMNPEL+C D +GKAAGFG LKDG+MFE STGLSR+L+SSPTCPVLE+LGKKLSFETA G+NGR WV+A 
Subjt:  VLAFEGGTRRNIPKFEMGALLYVRVVKVNPGMNPELACTDANGKAAGFGLLKDGYMFECSTGLSRVLVSSPTCPVLESLGKKLSFETAVGINGRVWVNAD

Query:  SPSSTIVVSNAIMSSETLTGVQQRIMVDKLLHNL
        +P   I+V+NA+M+SETL+G QQRIMV+KLL  +
Subjt:  SPSSTIVVSNAIMSSETLTGVQQRIMVDKLLHNL

AT2G25355.2 PNAS-3 related6.1e-8470.14Show/hide
Query:  MANETIRLVGGLRQDHDAISVAKVGKLRFSKPNKYWVESSQKRYVPCAEDCVLGIVVDSRADNFLVDIKGPSLASLPVLAFEGGTRRNIPKFEMGALLYV
        M N+TI+L  GLRQD++ ISV + GKLR+SKPNKYWVESS KRYVP  ED VLGIVVD + +N+ +DIKGP LA LPVLAFEG  RRN PKFE+  LLY 
Subjt:  MANETIRLVGGLRQDHDAISVAKVGKLRFSKPNKYWVESSQKRYVPCAEDCVLGIVVDSRADNFLVDIKGPSLASLPVLAFEGGTRRNIPKFEMGALLYV

Query:  RVVKVNPGMNPELACTDANGKAAGFGLLKDGYMFECSTGLSRVLVSSPTCPVLESLGKKLSFETAVGINGRVWVNADSPSSTIVVSNAIMSSETLTGVQQ
        RVVK N GMNPEL+C D +GKAAGFG LKDG+MFE STGLSR+L+SSPTCPVLE+LGKKLSFETA G+NGR WV+A +P   I+V+NA+M+SETL+G QQ
Subjt:  RVVKVNPGMNPELACTDANGKAAGFGLLKDGYMFECSTGLSRVLVSSPTCPVLESLGKKLSFETAVGINGRVWVNADSPSSTIVVSNAIMSSETLTGVQQ

Query:  RIMVDKLLHNL
        RIMV+KLL  +
Subjt:  RIMVDKLLHNL

AT4G32175.1 PNAS-3 related1.9e-9372.03Show/hide
Query:  MVEKSSSSSSTLVDQPVVPGDVVLDLSNMANETIRLVGGLRQDHDAISVAKVGKLRFSKPNKYWVESSQKRYVPCAEDCVLGIVVDSRADNFLVDIKGPS
        M  K S S ++L++Q VVPGDVVLDLSNM N+TI+L  GL QD+DAIS  + GKL +SKPNKYW+ESS KRY+P  +D VLGIVVDSRADNF VDIKGP 
Subjt:  MVEKSSSSSSTLVDQPVVPGDVVLDLSNMANETIRLVGGLRQDHDAISVAKVGKLRFSKPNKYWVESSQKRYVPCAEDCVLGIVVDSRADNFLVDIKGPS

Query:  LASLPVLAFEGGTRRNIPKFEMGALLYVRVVKVNPGMNPELACTDANGKAAGFGLLKDGYMFECSTGLSRVLVSSPTCPVLESLGKKLSFETAVGINGRV
        LA LPVLAFEGGTRRNIPKFE+G LLY+RVVK N GMNPEL+CT+A+GKAA FG L+DG+MFE STGLSR+L++SPT PV+E+LGKKLSFE AVG+NGRV
Subjt:  LASLPVLAFEGGTRRNIPKFEMGALLYVRVVKVNPGMNPELACTDANGKAAGFGLLKDGYMFECSTGLSRVLVSSPTCPVLESLGKKLSFETAVGINGRV

Query:  WVNADSPSSTIVVSNAIMSSETLTGVQQRIMVDKLL
        WVNA +P   I+V+NAIM+SE+L+G QQRIMV+KLL
Subjt:  WVNADSPSSTIVVSNAIMSSETLTGVQQRIMVDKLL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTTGAAAAATCTTCCAGTTCATCGTCTACTCTCGTCGATCAACCAGTTGTTCCTGGCGATGTGGTTCTTGACCTCTCAAACATGGCCAACGAGACCATCAGGCTTGT
CGGCGGTCTTCGACAGGACCATGATGCTATTTCTGTTGCCAAAGTTGGAAAACTGAGGTTCTCGAAACCAAACAAATATTGGGTTGAAAGCTCACAGAAAAGGTATGTAC
CATGTGCAGAAGATTGTGTACTTGGAATCGTGGTCGACTCTAGAGCCGATAATTTTCTTGTTGACATAAAAGGTCCTTCATTAGCCTCTCTTCCTGTTCTTGCATTTGAA
GGAGGAACAAGGAGAAACATACCCAAATTTGAGATGGGTGCACTGCTTTATGTGCGGGTAGTAAAGGTAAACCCCGGTATGAATCCCGAGTTGGCCTGCACTGATGCCAA
TGGGAAAGCAGCTGGATTTGGCCTCCTCAAGGATGGTTACATGTTTGAATGTTCTACTGGGTTATCAAGAGTGCTTGTAAGCTCGCCAACATGTCCAGTTCTTGAATCTC
TTGGGAAGAAGCTTTCATTTGAGACAGCAGTTGGTATAAATGGTCGTGTTTGGGTGAATGCTGATTCTCCGTCCTCGACCATTGTTGTTTCTAATGCGATAATGAGCTCT
GAAACTCTGACTGGGGTCCAACAGAGAATCATGGTGGATAAACTCCTTCATAATTTAAAGCTGTCAAGTTAG
mRNA sequenceShow/hide mRNA sequence
GTTTCTTCCACTCCCAATTATTCCAATCGCCGACTTCATCAAGTGTACAAATTCTCATTTACTTTGCAGAAAGTTTTTGTATCTGTAACCATGGTTGAAAAATCTTCCAG
TTCATCGTCTACTCTCGTCGATCAACCAGTTGTTCCTGGCGATGTGGTTCTTGACCTCTCAAACATGGCCAACGAGACCATCAGGCTTGTCGGCGGTCTTCGACAGGACC
ATGATGCTATTTCTGTTGCCAAAGTTGGAAAACTGAGGTTCTCGAAACCAAACAAATATTGGGTTGAAAGCTCACAGAAAAGGTATGTACCATGTGCAGAAGATTGTGTA
CTTGGAATCGTGGTCGACTCTAGAGCCGATAATTTTCTTGTTGACATAAAAGGTCCTTCATTAGCCTCTCTTCCTGTTCTTGCATTTGAAGGAGGAACAAGGAGAAACAT
ACCCAAATTTGAGATGGGTGCACTGCTTTATGTGCGGGTAGTAAAGGTAAACCCCGGTATGAATCCCGAGTTGGCCTGCACTGATGCCAATGGGAAAGCAGCTGGATTTG
GCCTCCTCAAGGATGGTTACATGTTTGAATGTTCTACTGGGTTATCAAGAGTGCTTGTAAGCTCGCCAACATGTCCAGTTCTTGAATCTCTTGGGAAGAAGCTTTCATTT
GAGACAGCAGTTGGTATAAATGGTCGTGTTTGGGTGAATGCTGATTCTCCGTCCTCGACCATTGTTGTTTCTAATGCGATAATGAGCTCTGAAACTCTGACTGGGGTCCA
ACAGAGAATCATGGTGGATAAACTCCTTCATAATTTAAAGCTGTCAAGTTAGTCCTGTAAACTTCAGGGTCATAATAGTTTGTTGTTAAATTACATTTTTAGTAATGTAT
CATTTAGTTTATGGGTTTTATGAAACAGTTAGTCAATTATTTTTTTCTCTCTAACCAAAAATGAATCTTTTTTCTTACGGATTCAATTATATTATCAACTCTCAAGTTGA
A
Protein sequenceShow/hide protein sequence
MVEKSSSSSSTLVDQPVVPGDVVLDLSNMANETIRLVGGLRQDHDAISVAKVGKLRFSKPNKYWVESSQKRYVPCAEDCVLGIVVDSRADNFLVDIKGPSLASLPVLAFE
GGTRRNIPKFEMGALLYVRVVKVNPGMNPELACTDANGKAAGFGLLKDGYMFECSTGLSRVLVSSPTCPVLESLGKKLSFETAVGINGRVWVNADSPSSTIVVSNAIMSS
ETLTGVQQRIMVDKLLHNLKLSS