; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Sed0013241 (gene) of Chayote v1 genome

Gene IDSed0013241
OrganismSechium edule (Chayote v1)
Descriptionprotein RADIALIS-like 3
Genome locationLG04:47343813..47345311
RNA-Seq ExpressionSed0013241
SyntenySed0013241
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0005634 - nucleus (cellular component)
GO:1990904 - ribonucleoprotein complex (cellular component)
GO:0003700 - DNA-binding transcription factor activity (molecular function)
GO:0003723 - RNA binding (molecular function)
InterPro domainsIPR001005 - SANT/Myb domain
IPR009057 - Homeobox-like domain superfamily
IPR017884 - SANT domain
IPR017930 - Myb domain
IPR044636 - Transcription factor RADIALIS-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6572047.1 Protein RADIALIS-like 6, partial [Cucurbita argyrosperma subsp. sororia]8.4e-3985.42Show/hide
Query:  MASSSLKQHRQEATWTAKQNKLFEKALALYDKDTPERWQNIAKAVGGKSADDVERHYEVLLEDLRRIESGRVPIPHYRGAGNGDEELRLLKFLKLQ
        MA+SSLKQ R EATWTAKQNKLFEKALALYDK+TPERW NIA AVGGKSAD+V+RHYE+LLEDLRRIESG VPIP+YRG  NGDEELRLLK+LKLQ
Subjt:  MASSSLKQHRQEATWTAKQNKLFEKALALYDKDTPERWQNIAKAVGGKSADDVERHYEVLLEDLRRIESGRVPIPHYRGAGNGDEELRLLKFLKLQ

XP_022952671.1 protein RADIALIS-like 3 [Cucurbita moschata]6.4e-3986.46Show/hide
Query:  MASSSLKQHRQEATWTAKQNKLFEKALALYDKDTPERWQNIAKAVGGKSADDVERHYEVLLEDLRRIESGRVPIPHYRGAGNGDEELRLLKFLKLQ
        MASSSLKQ R EATWTAKQNKLFEKALALYDK+TPERW NIA AVGGKSAD+V+RHYE+LLEDL RIESGRVPIP+YRG  NGDEELRLLK+LKLQ
Subjt:  MASSSLKQHRQEATWTAKQNKLFEKALALYDKDTPERWQNIAKAVGGKSADDVERHYEVLLEDLRRIESGRVPIPHYRGAGNGDEELRLLKFLKLQ

XP_022975322.1 protein RADIALIS-like 3 [Cucurbita maxima]4.9e-3986.46Show/hide
Query:  MASSSLKQHRQEATWTAKQNKLFEKALALYDKDTPERWQNIAKAVGGKSADDVERHYEVLLEDLRRIESGRVPIPHYRGAGNGDEELRLLKFLKLQ
        MASSSLKQ R EATWTAKQNKLFEKALALYDK+ PERW NIA AVGGKSAD+V+RHYE+LLEDL+RIESGRVPIP+YRGA NGDEELRLLK+LKLQ
Subjt:  MASSSLKQHRQEATWTAKQNKLFEKALALYDKDTPERWQNIAKAVGGKSADDVERHYEVLLEDLRRIESGRVPIPHYRGAGNGDEELRLLKFLKLQ

XP_023554816.1 protein RADIALIS-like 3 [Cucurbita pepo subsp. pepo]3.4e-4088.54Show/hide
Query:  MASSSLKQHRQEATWTAKQNKLFEKALALYDKDTPERWQNIAKAVGGKSADDVERHYEVLLEDLRRIESGRVPIPHYRGAGNGDEELRLLKFLKLQ
        MASSSLKQ R EATWTAKQNKLFEKALALYDK+TPERW NIA AVGGKSAD+V+RHYE+LLEDLRRIESGRVPIP+YRGA NGDEELRLLK+LKLQ
Subjt:  MASSSLKQHRQEATWTAKQNKLFEKALALYDKDTPERWQNIAKAVGGKSADDVERHYEVLLEDLRRIESGRVPIPHYRGAGNGDEELRLLKFLKLQ

XP_038888995.1 protein RADIALIS-like 3 isoform X1 [Benincasa hispida]6.4e-3986.46Show/hide
Query:  MASSSLKQHRQEATWTAKQNKLFEKALALYDKDTPERWQNIAKAVGGKSADDVERHYEVLLEDLRRIESGRVPIPHYRGAGNGDEELRLLKFLKLQ
        MASSSLKQ R E TWTAKQNKLFEKALALYDK+TPERW NIA AVGGKS D+V+RHYEVLLEDLRRIESGRVPIP+YRG GN DEELRLLK+LKLQ
Subjt:  MASSSLKQHRQEATWTAKQNKLFEKALALYDKDTPERWQNIAKAVGGKSADDVERHYEVLLEDLRRIESGRVPIPHYRGAGNGDEELRLLKFLKLQ

TrEMBL top hitse value%identityAlignment
A0A0A0K2A2 SANT domain-containing protein1.5e-3885.42Show/hide
Query:  MASSSLKQHRQEATWTAKQNKLFEKALALYDKDTPERWQNIAKAVGGKSADDVERHYEVLLEDLRRIESGRVPIPHYRGAGNGDEELRLLKFLKLQ
        MASSSLKQ R E TWT KQNKLFEKALALYDKDTPERWQNIA AVGGKSAD+V+RHYE+LLEDLRRIESGRVPIP+YR   N DEELRLLK+LKLQ
Subjt:  MASSSLKQHRQEATWTAKQNKLFEKALALYDKDTPERWQNIAKAVGGKSADDVERHYEVLLEDLRRIESGRVPIPHYRGAGNGDEELRLLKFLKLQ

A0A1S3BHB0 protein RADIALIS-like 35.3e-3985.42Show/hide
Query:  MASSSLKQHRQEATWTAKQNKLFEKALALYDKDTPERWQNIAKAVGGKSADDVERHYEVLLEDLRRIESGRVPIPHYRGAGNGDEELRLLKFLKLQ
        MASSSLKQ R E TWT KQNKLFEKALALYDKDTPERWQNIA AVGGKSAD+V+RHYE+LLEDLR+IESGRVPIP+YRG  N DEELRLLK+LKLQ
Subjt:  MASSSLKQHRQEATWTAKQNKLFEKALALYDKDTPERWQNIAKAVGGKSADDVERHYEVLLEDLRRIESGRVPIPHYRGAGNGDEELRLLKFLKLQ

A0A6J1C2H2 protein RADIALIS-like 33.5e-3883Show/hide
Query:  MASSSLKQHRQEATWTAKQNKLFEKALALYDKDTPERWQNIAKAVGGKSADDVERHYEVLLEDLRRIESGRVPIPHYR----GAGNGDEELRLLKFLKLQ
        MASSSLKQ R EATWTAKQNKLFEKALALYDK+TPERWQNIA AVGGKSAD+V+RHY++LLEDLRRIESGRVPIP+YR     AGN DEELRLLK+LKL+
Subjt:  MASSSLKQHRQEATWTAKQNKLFEKALALYDKDTPERWQNIAKAVGGKSADDVERHYEVLLEDLRRIESGRVPIPHYR----GAGNGDEELRLLKFLKLQ

A0A6J1GKW1 protein RADIALIS-like 33.1e-3986.46Show/hide
Query:  MASSSLKQHRQEATWTAKQNKLFEKALALYDKDTPERWQNIAKAVGGKSADDVERHYEVLLEDLRRIESGRVPIPHYRGAGNGDEELRLLKFLKLQ
        MASSSLKQ R EATWTAKQNKLFEKALALYDK+TPERW NIA AVGGKSAD+V+RHYE+LLEDL RIESGRVPIP+YRG  NGDEELRLLK+LKLQ
Subjt:  MASSSLKQHRQEATWTAKQNKLFEKALALYDKDTPERWQNIAKAVGGKSADDVERHYEVLLEDLRRIESGRVPIPHYRGAGNGDEELRLLKFLKLQ

A0A6J1ICR6 protein RADIALIS-like 32.4e-3986.46Show/hide
Query:  MASSSLKQHRQEATWTAKQNKLFEKALALYDKDTPERWQNIAKAVGGKSADDVERHYEVLLEDLRRIESGRVPIPHYRGAGNGDEELRLLKFLKLQ
        MASSSLKQ R EATWTAKQNKLFEKALALYDK+ PERW NIA AVGGKSAD+V+RHYE+LLEDL+RIESGRVPIP+YRGA NGDEELRLLK+LKLQ
Subjt:  MASSSLKQHRQEATWTAKQNKLFEKALALYDKDTPERWQNIAKAVGGKSADDVERHYEVLLEDLRRIESGRVPIPHYRGAGNGDEELRLLKFLKLQ

SwissProt top hitse value%identityAlignment
F4JVB8 Protein RADIALIS-like 11.4e-2352.48Show/hide
Query:  MASSSLKQHRQEATWTAKQNKLFEKALALYDKDTPERWQNIAKAVGGKSADDVERHYEVLLEDLRRIESGRVPIPHYRGAG---NG--DEELRLLKFLKL
        MASSS+   +   +WTAKQNK FE+ALA YD+DTP RWQN+AK VGGK+ ++V+RHYE+L++D+  IE+G VP P+YR +G   NG   +E + ++ ++L
Subjt:  MASSSLKQHRQEATWTAKQNKLFEKALALYDKDTPERWQNIAKAVGGKSADDVERHYEVLLEDLRRIESGRVPIPHYRGAG---NG--DEELRLLKFLKL

Query:  Q
        Q
Subjt:  Q

Q1A173 Protein RADIALIS-like 62.0e-2254.65Show/hide
Query:  WTAKQNKLFEKALALYDKDTPERWQNIAKAVGGKSADDVERHYEVLLEDLRRIESGRVPIPHYR-----GAGNGDEELRLLKFLKL
        WT  QNK+FE+ALA+YDKDTP+RW N+AKAVGGK+ ++V+RHY++L+EDL  IE+GRVP+P+Y+          D + R +K LK+
Subjt:  WTAKQNKLFEKALALYDKDTPERWQNIAKAVGGKSADDVERHYEVLLEDLRRIESGRVPIPHYR-----GAGNGDEELRLLKFLKL

Q58FS3 Transcription factor RADIALIS6.3e-2159.7Show/hide
Query:  WTAKQNKLFEKALALYDKDTPERWQNIAKAVGGKSADDVERHYEVLLEDLRRIESGRVPIPHYRGAG
        W+AK+NK FE+ALA+YDKDTP+RW N+A+AV G++ ++V++HYE+L+ED++ IESG+VP P+YR  G
Subjt:  WTAKQNKLFEKALALYDKDTPERWQNIAKAVGGKSADDVERHYEVLLEDLRRIESGRVPIPHYRGAG

Q6NNN0 Protein RADIALIS-like 32.3e-2360.98Show/hide
Query:  MASSSLKQHRQEATWTAKQNKLFEKALALYDKDTPERWQNIAKAVGGKSADDVERHYEVLLEDLRRIESGRVPIPHYRGAGN
        MAS+S+      A+WT K+NKLFE+ALA YD+DTP+RW N+A+AVGGKSA++V RHYE+L+ D+  IESGR P P+YR  GN
Subjt:  MASSSLKQHRQEATWTAKQNKLFEKALALYDKDTPERWQNIAKAVGGKSADDVERHYEVLLEDLRRIESGRVPIPHYRGAGN

Q8GW75 Protein RADIALIS-like 55.5e-2553.4Show/hide
Query:  MASSSLKQHRQEATWTAKQNKLFEKALALYDKDTPERWQNIAKAVGGKSADDVERHYEVLLEDLRRIESGRVPIPHY-------RGAGNGDEELRLLKFL
        MASSS+      ++WT+KQNK+FE+ALA+YDKDTP+RWQN+AKAVG KSA++V+RHY++L+EDL  IE   VP+P Y       +  G  D +LRL+K +
Subjt:  MASSSLKQHRQEATWTAKQNKLFEKALALYDKDTPERWQNIAKAVGGKSADDVERHYEVLLEDLRRIESGRVPIPHY-------RGAGNGDEELRLLKFL

Query:  KLQ
        ++Q
Subjt:  KLQ

Arabidopsis top hitse value%identityAlignment
AT1G19510.1 RAD-like 53.9e-2653.4Show/hide
Query:  MASSSLKQHRQEATWTAKQNKLFEKALALYDKDTPERWQNIAKAVGGKSADDVERHYEVLLEDLRRIESGRVPIPHY-------RGAGNGDEELRLLKFL
        MASSS+      ++WT+KQNK+FE+ALA+YDKDTP+RWQN+AKAVG KSA++V+RHY++L+EDL  IE   VP+P Y       +  G  D +LRL+K +
Subjt:  MASSSLKQHRQEATWTAKQNKLFEKALALYDKDTPERWQNIAKAVGGKSADDVERHYEVLLEDLRRIESGRVPIPHY-------RGAGNGDEELRLLKFL

Query:  KLQ
        ++Q
Subjt:  KLQ

AT1G75250.1 RAD-like 65.3e-2365.62Show/hide
Query:  WTAKQNKLFEKALALYDKDTPERWQNIAKAVGGKSADDVERHYEVLLEDLRRIESGRVPIPHYR
        WT  QNK+FE+ALA+YDKDTP+RW N+AKAVGGK+ ++V+RHY++L+EDL  IE+GRVP+P+Y+
Subjt:  WTAKQNKLFEKALALYDKDTPERWQNIAKAVGGKSADDVERHYEVLLEDLRRIESGRVPIPHYR

AT1G75250.2 RAD-like 61.4e-2354.65Show/hide
Query:  WTAKQNKLFEKALALYDKDTPERWQNIAKAVGGKSADDVERHYEVLLEDLRRIESGRVPIPHYR-----GAGNGDEELRLLKFLKL
        WT  QNK+FE+ALA+YDKDTP+RW N+AKAVGGK+ ++V+RHY++L+EDL  IE+GRVP+P+Y+          D + R +K LK+
Subjt:  WTAKQNKLFEKALALYDKDTPERWQNIAKAVGGKSADDVERHYEVLLEDLRRIESGRVPIPHYR-----GAGNGDEELRLLKFLKL

AT2G18328.1 RAD-like 42.2e-2160.26Show/hide
Query:  MASSSLKQHRQEATWTAKQNKLFEKALALYDKDTPERWQNIAKAVGGKSADDVERHYEVLLEDLRRIESGRVPIPHYR
        MASSS+      ++WTA+++K FE ALA +DKDTP+RWQ IA+AVGGKS ++V+RHYE+LL D+  IESGR P P YR
Subjt:  MASSSLKQHRQEATWTAKQNKLFEKALALYDKDTPERWQNIAKAVGGKSADDVERHYEVLLEDLRRIESGRVPIPHYR

AT4G39250.1 RAD-like 19.6e-2552.48Show/hide
Query:  MASSSLKQHRQEATWTAKQNKLFEKALALYDKDTPERWQNIAKAVGGKSADDVERHYEVLLEDLRRIESGRVPIPHYRGAG---NG--DEELRLLKFLKL
        MASSS+   +   +WTAKQNK FE+ALA YD+DTP RWQN+AK VGGK+ ++V+RHYE+L++D+  IE+G VP P+YR +G   NG   +E + ++ ++L
Subjt:  MASSSLKQHRQEATWTAKQNKLFEKALALYDKDTPERWQNIAKAVGGKSADDVERHYEVLLEDLRRIESGRVPIPHYRGAG---NG--DEELRLLKFLKL

Query:  Q
        Q
Subjt:  Q


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTTCGAGCTCTTTGAAGCAGCACCGACAGGAGGCGACGTGGACCGCAAAGCAGAACAAGCTGTTCGAGAAGGCACTGGCTTTGTATGACAAAGATACGCCGGAAAG
ATGGCAGAACATAGCAAAAGCGGTCGGTGGGAAGTCGGCCGACGACGTCGAAAGACACTATGAGGTACTCTTGGAAGATCTCCGGCGAATTGAGTCCGGCCGAGTGCCTA
TTCCCCATTACAGAGGCGCCGGCAATGGAGATGAAGAGTTGAGGCTGCTCAAGTTTCTAAAGCTGCAATGA
mRNA sequenceShow/hide mRNA sequence
CAGATTCTTAACTTTATATCTTCACACTCCACACTTGTGGCTGAAAGTGCAACCAGTGACATATAGATTCTTCCAGCTTGCAACTTCAATTAATTGCTTCAAATATACAT
ACAGTACATATATATAATCACTTTCTTCATTGTTCTTCATATATAATAAAAAAAAAAAAAACAAAGATCCATCTCCAATGGCTTCGAGCTCTTTGAAGCAGCACCGACAG
GAGGCGACGTGGACCGCAAAGCAGAACAAGCTGTTCGAGAAGGCACTGGCTTTGTATGACAAAGATACGCCGGAAAGATGGCAGAACATAGCAAAAGCGGTCGGTGGGAA
GTCGGCCGACGACGTCGAAAGACACTATGAGGTACTCTTGGAAGATCTCCGGCGAATTGAGTCCGGCCGAGTGCCTATTCCCCATTACAGAGGCGCCGGCAATGGAGATG
AAGAGTTGAGGCTGCTCAAGTTTCTAAAGCTGCAATGAAGTTGCCTACCACTGCCATATTCAATCAGCTCTCATCAAAATTACAAACTAATTAAATTATGTTGTACACAA
TTATGGCTCACTTGGCTAGATGAATTCATACAT
Protein sequenceShow/hide protein sequence
MASSSLKQHRQEATWTAKQNKLFEKALALYDKDTPERWQNIAKAVGGKSADDVERHYEVLLEDLRRIESGRVPIPHYRGAGNGDEELRLLKFLKLQ