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Sed0013251 (gene) of Chayote v1 genome

Gene IDSed0013251
OrganismSechium edule (Chayote v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationLG09:27492800..27495399
RNA-Seq ExpressionSed0013251
SyntenySed0013251
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG5556480.1 hypothetical protein RHGRI_006924 [Rhododendron griersonianum]2.0e-0527.33Show/hide
Query:  DGRRLDSASDIEIEIGNYFGKLFSTNGPGPIGAISDLFHKVSPVVSPSLASRMSSPFSEEK-----------GTKVAVFISP-SGAWDGGKLEELLCRDD
        DG   +S  DI +EIG+YF  LF  +GP      S     +SP V+  +   ++   ++E+              VA FI+P S  W   KL ++L  ++
Subjt:  DGRRLDSASDIEIEIGNYFGKLFSTNGPGPIGAISDLFHKVSPVVSPSLASRMSSPFSEEK-----------GTKVAVFISP-SGAWDGGKLEELLCRDD

Query:  VEKVLKMPRLSPPWNDRVLWNYDSLGCFSVKLAY-------------RPACNSQVLPSSWN
        V+ V  +P       D ++W     G ++VK  Y             RP+ ++   PS WN
Subjt:  VEKVLKMPRLSPPWNDRVLWNYDSLGCFSVKLAY-------------RPACNSQVLPSSWN

XP_030479177.1 uncharacterized protein LOC115696415 [Cannabis sativa]9.1e-0640Show/hide
Query:  VAVFISPSGAWDGGKLEELLCRDDVEKVLKMPRLSPPWNDRVLWNYDSLGCFSVKLAYRPACNSQVLPSS
        ++ FIS SG WD GKL+       V+ +L +P      +D+ +W  +S GCF++K AY  A ++Q LPSS
Subjt:  VAVFISPSGAWDGGKLEELLCRDDVEKVLKMPRLSPPWNDRVLWNYDSLGCFSVKLAYRPACNSQVLPSS

XP_030479179.1 uncharacterized protein LOC115696417 [Cannabis sativa]3.1e-0640Show/hide
Query:  VAVFISPSGAWDGGKLEELLCRDDVEKVLKMPRLSPPWNDRVLWNYDSLGCFSVKLAYRPACNSQVLPSS
        ++ FISPSG+WD GKL        VE +L++P      ND ++W  ++ G F+VK AY  A  S+ +P+S
Subjt:  VAVFISPSGAWDGGKLEELLCRDDVEKVLKMPRLSPPWNDRVLWNYDSLGCFSVKLAYRPACNSQVLPSS

XP_030502376.1 uncharacterized protein LOC115717528 [Cannabis sativa]4.1e-0640Show/hide
Query:  VAVFISPSGAWDGGKLEELLCRDDVEKVLKMPRLSPPWNDRVLWNYDSLGCFSVKLAYRPACNSQVLPSS
        ++ FI+ SG WD GKL+       V  +L +P      +D+++W  +S GCF+VK AY  A ++Q LPSS
Subjt:  VAVFISPSGAWDGGKLEELLCRDDVEKVLKMPRLSPPWNDRVLWNYDSLGCFSVKLAYRPACNSQVLPSS

XP_030502714.1 uncharacterized protein LOC115717884 [Cannabis sativa]1.8e-0638.67Show/hide
Query:  TKVAVFISPSGAWDGGKLEELLCRDDVEKVLKMPRLSPPWNDRVLWNYDSLGCFSVKLAYRPACNSQVLPSSWNA
        TK++ FIS SG WD  KL       D++ +L++P       D ++W+ +S G F+VK AY  A ++Q +PSS +A
Subjt:  TKVAVFISPSGAWDGGKLEELLCRDDVEKVLKMPRLSPPWNDRVLWNYDSLGCFSVKLAYRPACNSQVLPSSWNA

TrEMBL top hitse value%identityAlignment
A0A803NK25 Uncharacterized protein1.3e-0535.56Show/hide
Query:  LASRMSSPFSEEKGTKVAVFISPSGAWDGGKLEELLCRDDVEKVLKMPRLSPPWNDRVLWNYDSLGCFSVKLAYRPACNSQVLPSSWNAD
        + S  S P SE   + ++ F+SPSGAWD  KL +      ++ +L +P      +D ++W+ +S G F+VK AY  A  S+ +PSS + D
Subjt:  LASRMSSPFSEEKGTKVAVFISPSGAWDGGKLEELLCRDDVEKVLKMPRLSPPWNDRVLWNYDSLGCFSVKLAYRPACNSQVLPSSWNAD

A0A803P2U6 Uncharacterized protein3.4e-0641.43Show/hide
Query:  VAVFISPSGAWDGGKLEELLCRDDVEKVLKMPRLSPPWNDRVLWNYDSLGCFSVKLAYRPACNSQVLPSS
        ++ FIS SG WD GKL+       V+ +L +P      +D+ +W  +S GCF+VK AY  A ++Q LPSS
Subjt:  VAVFISPSGAWDGGKLEELLCRDDVEKVLKMPRLSPPWNDRVLWNYDSLGCFSVKLAYRPACNSQVLPSS

A0A803Q8N8 Uncharacterized protein7.5e-0638.57Show/hide
Query:  VAVFISPSGAWDGGKLEELLCRDDVEKVLKMPRLSPPWNDRVLWNYDSLGCFSVKLAYRPACNSQVLPSS
        ++ FISPSG+WD GKL        VE +L++P      ND ++W  +++G F+VK AY  +  S  +P+S
Subjt:  VAVFISPSGAWDGGKLEELLCRDDVEKVLKMPRLSPPWNDRVLWNYDSLGCFSVKLAYRPACNSQVLPSS

A0A803QBD3 Uncharacterized protein1.3e-0535.56Show/hide
Query:  LASRMSSPFSEEKGTKVAVFISPSGAWDGGKLEELLCRDDVEKVLKMPRLSPPWNDRVLWNYDSLGCFSVKLAYRPACNSQVLPSSWNAD
        + S  S P SE   + ++ F+SPSGAWD  KL +      ++ +L +P      +D ++W+ +S G F+VK AY  A  S+ +PSS + D
Subjt:  LASRMSSPFSEEKGTKVAVFISPSGAWDGGKLEELLCRDDVEKVLKMPRLSPPWNDRVLWNYDSLGCFSVKLAYRPACNSQVLPSSWNAD

A0A803QGZ6 Uncharacterized protein1.5e-0640Show/hide
Query:  VAVFISPSGAWDGGKLEELLCRDDVEKVLKMPRLSPPWNDRVLWNYDSLGCFSVKLAYRPACNSQVLPSS
        ++ FISPSG+WD GKL        VE +L++P      ND ++W  ++ G F+VK AY  A  S+ +P+S
Subjt:  VAVFISPSGAWDGGKLEELLCRDDVEKVLKMPRLSPPWNDRVLWNYDSLGCFSVKLAYRPACNSQVLPSS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGTTTCCGTGGCGAAGTGTTTACGCGGTGTCGCTCTCAGAATAATAGGGTGGTTCTAAAGGAAAGATTGGATCGCGGAAAGGATTTGTCTGGTAGGCTGAAGCAGTG
TTCGTCGACTTTGTCGAGGTGGGGAGCCGATAAAAAAGGCTCTTATGGTAGGAAAATTGCCCTGGCTCGAGAAGTTCTCCAAAGGGATGGTCGTCGGCTTGATTCAGCTA
GCGATATTGAGATCGAGATTGGTAACTACTTTGGCAAGCTCTTCTCCACTAATGGACCTGGGCCTATTGGTGCTATCTCAGATTTGTTTCACAAGGTTAGTCCAGTTGTT
TCCCCTTCGCTAGCTTCTCGTATGTCTTCTCCATTTTCGGAAGAAAAGGGAACTAAAGTAGCAGTGTTCATTTCCCCATCGGGTGCTTGGGATGGTGGGAAATTAGAGGA
GCTTTTATGTCGAGATGATGTAGAGAAGGTTTTGAAGATGCCCCGTCTAAGTCCTCCATGGAACGATCGGGTGTTGTGGAACTATGATTCTTTGGGTTGTTTTAGTGTGA
AATTAGCCTATCGCCCCGCCTGTAATTCTCAGGTCCTCCCTTCGAGTTGGAATGCGGATGTTTCGGTGTAG
mRNA sequenceShow/hide mRNA sequence
ATGGGTTTCCGTGGCGAAGTGTTTACGCGGTGTCGCTCTCAGAATAATAGGGTGGTTCTAAAGGAAAGATTGGATCGCGGAAAGGATTTGTCTGGTAGGCTGAAGCAGTG
TTCGTCGACTTTGTCGAGGTGGGGAGCCGATAAAAAAGGCTCTTATGGTAGGAAAATTGCCCTGGCTCGAGAAGTTCTCCAAAGGGATGGTCGTCGGCTTGATTCAGCTA
GCGATATTGAGATCGAGATTGGTAACTACTTTGGCAAGCTCTTCTCCACTAATGGACCTGGGCCTATTGGTGCTATCTCAGATTTGTTTCACAAGGTTAGTCCAGTTGTT
TCCCCTTCGCTAGCTTCTCGTATGTCTTCTCCATTTTCGGAAGAAAAGGGAACTAAAGTAGCAGTGTTCATTTCCCCATCGGGTGCTTGGGATGGTGGGAAATTAGAGGA
GCTTTTATGTCGAGATGATGTAGAGAAGGTTTTGAAGATGCCCCGTCTAAGTCCTCCATGGAACGATCGGGTGTTGTGGAACTATGATTCTTTGGGTTGTTTTAGTGTGA
AATTAGCCTATCGCCCCGCCTGTAATTCTCAGGTCCTCCCTTCGAGTTGGAATGCGGATGTTTCGGTGTAG
Protein sequenceShow/hide protein sequence
MGFRGEVFTRCRSQNNRVVLKERLDRGKDLSGRLKQCSSTLSRWGADKKGSYGRKIALAREVLQRDGRRLDSASDIEIEIGNYFGKLFSTNGPGPIGAISDLFHKVSPVV
SPSLASRMSSPFSEEKGTKVAVFISPSGAWDGGKLEELLCRDDVEKVLKMPRLSPPWNDRVLWNYDSLGCFSVKLAYRPACNSQVLPSSWNADVSV