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Sed0013254 (gene) of Chayote v1 genome

Gene IDSed0013254
OrganismSechium edule (Chayote v1)
DescriptionLysM domain-containing protein
Genome locationLG13:1147460..1148085
RNA-Seq ExpressionSed0013254
SyntenySed0013254
Gene Ontology termsGO:0006468 - protein phosphorylation (biological process)
GO:0016021 - integral component of membrane (cellular component)
GO:0004672 - protein kinase activity (molecular function)
GO:0005524 - ATP binding (molecular function)
InterPro domainsIPR018392 - LysM domain
IPR036779 - LysM domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6576752.1 hypothetical protein SDJN03_24326, partial [Cucurbita argyrosperma subsp. sororia]2.7e-4275.86Show/hide
Query:  SKTWLPPSR--TDVVSWYCALGLLGLILVGYVRD---SSSAAEDGGRNLKGNLLTWRPCDEIYVVGEGETLHTISDKCGDPFIVERNPHIHDPDDVFPGL
        S+T  P SR   DVVSWYCAL LLGLIL+G +R+   SS++A+DGG+ L+GNLLT R CDEIYVVGEGETLHTISDKCGDP+IVERNPHIHDPDDVFPGL
Subjt:  SKTWLPPSR--TDVVSWYCALGLLGLILVGYVRD---SSSAAEDGGRNLKGNLLTWRPCDEIYVVGEGETLHTISDKCGDPFIVERNPHIHDPDDVFPGL

Query:  VIKIISSSNPPKSGLE
        VIKIISS NPPK G +
Subjt:  VIKIISSSNPPKSGLE

KGN57357.2 hypothetical protein Csa_009741 [Cucumis sativus]2.1e-3973.64Show/hide
Query:  VSISKTWLPPSRT----DVVSWYCALGLLGLILVGYVRDSSSAAEDGGRNLKGNLLTWRPCDEIYVVGEGETLHTISDKCGDPFIVERNPHIHDPDDVFP
        VS+ ++  P S +    DVVSWYCA+GLLGLIL+G +R++SS+ +  GR L+GNL+TWRPCDEIYVVGEGETLHTISDKCGDP+IVERNPHIHDPDDVFP
Subjt:  VSISKTWLPPSRT----DVVSWYCALGLLGLILVGYVRDSSSAAEDGGRNLKGNLLTWRPCDEIYVVGEGETLHTISDKCGDPFIVERNPHIHDPDDVFP

Query:  GLVIKIISSS
        GLVIKII+SS
Subjt:  GLVIKIISSS

XP_008439155.1 PREDICTED: uncharacterized protein LOC103484036 [Cucumis melo]3.0e-4184.95Show/hide
Query:  DVVSWYCALGLLGLILVGYVRDSSSAAEDGGRNLKGNLLTWRPCDEIYVVGEGETLHTISDKCGDPFIVERNPHIHDPDDVFPGLVIKIISSS
        DVVSWYCA+GLLGLIL+G +R++SS++ D GR+L+GNL+TWRPCDEIYVVGEGETLHTISDKCGDPFIVERNPHIHDPDDVFPGLVIKII+SS
Subjt:  DVVSWYCALGLLGLILVGYVRDSSSAAEDGGRNLKGNLLTWRPCDEIYVVGEGETLHTISDKCGDPFIVERNPHIHDPDDVFPGLVIKIISSS

XP_022157015.1 uncharacterized protein LOC111023841 [Momordica charantia]3.9e-4178.18Show/hide
Query:  PPSR--TDVVSWYCALGLLGLILVGYVRDS--SSAAEDGGRNLKGNLLTWRPCDEIYVVGEGETLHTISDKCGDPFIVERNPHIHDPDDVFPGLVIKIIS
        P SR  TDVVSWYCA+G+L LIL+G +R+S  S+ A D GR  +GNL+  RPCDEIYVVGEGETLHTISDKCGDPFIVERNPHIHDPDDVFPGLVIKIIS
Subjt:  PPSR--TDVVSWYCALGLLGLILVGYVRDS--SSAAEDGGRNLKGNLLTWRPCDEIYVVGEGETLHTISDKCGDPFIVERNPHIHDPDDVFPGLVIKIIS

Query:  SSNPPKSGLE
        SSNP  SGLE
Subjt:  SSNPPKSGLE

XP_022985106.1 uncharacterized protein LOC111483184 [Cucurbita maxima]5.0e-4173.91Show/hide
Query:  SKTWLPPSR--TDVVSWYCALGLLGLILVGYVRD--SSSAAEDGGRNLKGNLLTWRPCDEIYVVGEGETLHTISDKCGDPFIVERNPHIHDPDDVFPGLV
        S+T  P SR   DVVSWYCA+ +LGLIL+G +R+  SS++A+DG + L+GNLLT R CDEIYVVGEGETLHTISDKCGDP+IVERNPHIHDPDDVFPGLV
Subjt:  SKTWLPPSR--TDVVSWYCALGLLGLILVGYVRD--SSSAAEDGGRNLKGNLLTWRPCDEIYVVGEGETLHTISDKCGDPFIVERNPHIHDPDDVFPGLV

Query:  IKIISSSNPPKSGLE
        IKIISS NPPK G +
Subjt:  IKIISSSNPPKSGLE

TrEMBL top hitse value%identityAlignment
A0A0A0L5R9 LysM domain-containing protein1.0e-3973.64Show/hide
Query:  VSISKTWLPPSRT----DVVSWYCALGLLGLILVGYVRDSSSAAEDGGRNLKGNLLTWRPCDEIYVVGEGETLHTISDKCGDPFIVERNPHIHDPDDVFP
        VS+ ++  P S +    DVVSWYCA+GLLGLIL+G +R++SS+ +  GR L+GNL+TWRPCDEIYVVGEGETLHTISDKCGDP+IVERNPHIHDPDDVFP
Subjt:  VSISKTWLPPSRT----DVVSWYCALGLLGLILVGYVRDSSSAAEDGGRNLKGNLLTWRPCDEIYVVGEGETLHTISDKCGDPFIVERNPHIHDPDDVFP

Query:  GLVIKIISSS
        GLVIKII+SS
Subjt:  GLVIKIISSS

A0A1S3AXP2 uncharacterized protein LOC1034840361.4e-4184.95Show/hide
Query:  DVVSWYCALGLLGLILVGYVRDSSSAAEDGGRNLKGNLLTWRPCDEIYVVGEGETLHTISDKCGDPFIVERNPHIHDPDDVFPGLVIKIISSS
        DVVSWYCA+GLLGLIL+G +R++SS++ D GR+L+GNL+TWRPCDEIYVVGEGETLHTISDKCGDPFIVERNPHIHDPDDVFPGLVIKII+SS
Subjt:  DVVSWYCALGLLGLILVGYVRDSSSAAEDGGRNLKGNLLTWRPCDEIYVVGEGETLHTISDKCGDPFIVERNPHIHDPDDVFPGLVIKIISSS

A0A5A7VAP9 Peptidoglycan-binding LysM domain-containing protein1.4e-4184.95Show/hide
Query:  DVVSWYCALGLLGLILVGYVRDSSSAAEDGGRNLKGNLLTWRPCDEIYVVGEGETLHTISDKCGDPFIVERNPHIHDPDDVFPGLVIKIISSS
        DVVSWYCA+GLLGLIL+G +R++SS++ D GR+L+GNL+TWRPCDEIYVVGEGETLHTISDKCGDPFIVERNPHIHDPDDVFPGLVIKII+SS
Subjt:  DVVSWYCALGLLGLILVGYVRDSSSAAEDGGRNLKGNLLTWRPCDEIYVVGEGETLHTISDKCGDPFIVERNPHIHDPDDVFPGLVIKIISSS

A0A6J1DRZ3 uncharacterized protein LOC1110238411.9e-4178.18Show/hide
Query:  PPSR--TDVVSWYCALGLLGLILVGYVRDS--SSAAEDGGRNLKGNLLTWRPCDEIYVVGEGETLHTISDKCGDPFIVERNPHIHDPDDVFPGLVIKIIS
        P SR  TDVVSWYCA+G+L LIL+G +R+S  S+ A D GR  +GNL+  RPCDEIYVVGEGETLHTISDKCGDPFIVERNPHIHDPDDVFPGLVIKIIS
Subjt:  PPSR--TDVVSWYCALGLLGLILVGYVRDS--SSAAEDGGRNLKGNLLTWRPCDEIYVVGEGETLHTISDKCGDPFIVERNPHIHDPDDVFPGLVIKIIS

Query:  SSNPPKSGLE
        SSNP  SGLE
Subjt:  SSNPPKSGLE

A0A6J1J769 uncharacterized protein LOC1114831842.4e-4173.91Show/hide
Query:  SKTWLPPSR--TDVVSWYCALGLLGLILVGYVRD--SSSAAEDGGRNLKGNLLTWRPCDEIYVVGEGETLHTISDKCGDPFIVERNPHIHDPDDVFPGLV
        S+T  P SR   DVVSWYCA+ +LGLIL+G +R+  SS++A+DG + L+GNLLT R CDEIYVVGEGETLHTISDKCGDP+IVERNPHIHDPDDVFPGLV
Subjt:  SKTWLPPSR--TDVVSWYCALGLLGLILVGYVRD--SSSAAEDGGRNLKGNLLTWRPCDEIYVVGEGETLHTISDKCGDPFIVERNPHIHDPDDVFPGLV

Query:  IKIISSSNPPKSGLE
        IKIISS NPPK G +
Subjt:  IKIISSSNPPKSGLE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT3G52790.1 peptidoglycan-binding LysM domain-containing protein3.4e-1949Show/hide
Query:  VSWYCALGLLGLILVGYVRDSSSAAEDGGRNL-----KGNLLTW----RP-CDEIYVVGEGETLHTISDKCGDPFIVERNPHIHDPDDVFPGLVIKIISS
        +SWYCA+    ++L+    +S   A++G   +        ++T     RP CDEIY V EGETL TIS+KCGDP+IVE NPHIHD DD+FPGL+I+I  S
Subjt:  VSWYCALGLLGLILVGYVRDSSSAAEDGGRNL-----KGNLLTW----RP-CDEIYVVGEGETLHTISDKCGDPFIVERNPHIHDPDDVFPGLVIKIISS

AT4G25433.1 peptidoglycan-binding LysM domain-containing protein1.2e-2758.16Show/hide
Query:  SRTDVVSWYCALGLLGLILVGYVRDSSSAAED---GGRNL---KGNLLTWRPCDEIYVVGEGETLHTISDKCGDPFIVERNPHIHDPDDVFPGLVIKI
        SR++ V+ YC + LL L L G V++S+         GRN    +G  +  RPC+E+YVVGEG+TLH+IS+KCGDPFIVERNPHIHDPDDVFPGL+IK+
Subjt:  SRTDVVSWYCALGLLGLILVGYVRDSSSAAED---GGRNL---KGNLLTWRPCDEIYVVGEGETLHTISDKCGDPFIVERNPHIHDPDDVFPGLVIKI

AT5G62150.1 peptidoglycan-binding LysM domain-containing protein8.9e-2860Show/hide
Query:  TDVVSWYCALGLLGLILVGYVRDSSSAAEDGGRNLKGNLLTWRPCDEIYVVGEGETLHTISDKCGDPFIVERNPHIHDPDDVFPGLVIKI
        +D+ +W  A+ LL LIL+  VR+++++      +++G+  + +PC+EIY+VGEGETLHTI DKCGDPFIVERNPHIHDPDDVFPGLV+KI
Subjt:  TDVVSWYCALGLLGLILVGYVRDSSSAAEDGGRNLKGNLLTWRPCDEIYVVGEGETLHTISDKCGDPFIVERNPHIHDPDDVFPGLVIKI


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCGTTTCTATTTCCAAAACTTGGCTACCGCCGTCTCGAACCGACGTCGTTTCATGGTACTGCGCTTTGGGCCTATTGGGCCTGATCCTCGTCGGCTACGTCAGAGA
TTCCTCCTCCGCCGCGGAAGACGGCGGCCGGAATCTCAAAGGCAACTTGCTGACGTGGCGACCGTGCGACGAGATTTACGTGGTGGGAGAAGGAGAAACGCTTCACACGA
TTAGCGACAAGTGCGGTGACCCGTTTATCGTGGAGCGGAACCCGCATATCCATGACCCGGATGACGTGTTCCCCGGTTTGGTCATCAAAATTATCTCCTCTTCCAACCCG
CCCAAATCCGGGTTGGAAATCCAAACTGCTTAA
mRNA sequenceShow/hide mRNA sequence
AAAAAAACTAAAATATTTCCCTTCCAATTTCCACCATGGCCGTTTCTATTTCCAAAACTTGGCTACCGCCGTCTCGAACCGACGTCGTTTCATGGTACTGCGCTTTGGGC
CTATTGGGCCTGATCCTCGTCGGCTACGTCAGAGATTCCTCCTCCGCCGCGGAAGACGGCGGCCGGAATCTCAAAGGCAACTTGCTGACGTGGCGACCGTGCGACGAGAT
TTACGTGGTGGGAGAAGGAGAAACGCTTCACACGATTAGCGACAAGTGCGGTGACCCGTTTATCGTGGAGCGGAACCCGCATATCCATGACCCGGATGACGTGTTCCCCG
GTTTGGTCATCAAAATTATCTCCTCTTCCAACCCGCCCAAATCCGGGTTGGAAATCCAAACTGCTTAATTTTTTTTCCCATAAATAATACACCACAAAAATTAAAAGGTT
TAGATTTTTTTTTTTAATAATTTCCCAGACAGAAATTGTGTGTGTTTTTTTTTCGTTAAGGATATATAGAGGTGGAAGATATATAGTTTAAATATTTTGAGGGAAAGAAT
TAAGGAATGTTTATTTGTAATTTATCTTTTCTTTTTTCCTTTAATTTCTCTTCTTTTTTTTTCTTTTTTTCTGTTC
Protein sequenceShow/hide protein sequence
MAVSISKTWLPPSRTDVVSWYCALGLLGLILVGYVRDSSSAAEDGGRNLKGNLLTWRPCDEIYVVGEGETLHTISDKCGDPFIVERNPHIHDPDDVFPGLVIKIISSSNP
PKSGLEIQTA