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Sed0013270 (gene) of Chayote v1 genome

Gene IDSed0013270
OrganismSechium edule (Chayote v1)
DescriptionMsrB domain-containing protein
Genome locationLG04:11395069..11402898
RNA-Seq ExpressionSed0013270
SyntenySed0013270
Gene Ontology termsNA
InterPro domainsIPR011057 - Mss4-like superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004146165.1 uncharacterized protein At4g08330, chloroplastic [Cucumis sativus]8.9e-4281.82Show/hide
Query:  MASIYSCTACGANLNLNSGHLFPPDFYFEAGNKATLSFSSIDSSKFQFEHEDKLRPFFETLNYWGIHRKRTKIKCSACARLLGHVYDDGPPLTDSPGGF
        MASIYSCT CG NLNLNS HLFPPDFYFEAGNK TLSFS IDS+KF+ E EDKLRPFFETLNYWGI RKRTK+KC++C  L+G+VYDDGPPLTDSPG F
Subjt:  MASIYSCTACGANLNLNSGHLFPPDFYFEAGNKATLSFSSIDSSKFQFEHEDKLRPFFETLNYWGIHRKRTKIKCSACARLLGHVYDDGPPLTDSPGGF
XP_018853670.1 uncharacterized protein LOC109015663 [Juglans regia]5.2e-4280.81Show/hide
Query:  MASIYSCTACGANLNLNSGHLFPPDFYFEAGNKATLSFSSIDSSKFQFEHEDKLRPFFETLNYWGIHRKRTKIKCSACARLLGHVYDDGPPLTDSPGGF
        MASIYSCT CG NLNL + HLFPPDFYFEAGNK TLSFSS+D SKF+FE EDK+RPFFET+NYWGI RKRTKIKC++C RL+G+VYDDGPPLTDSPG F
Subjt:  MASIYSCTACGANLNLNSGHLFPPDFYFEAGNKATLSFSSIDSSKFQFEHEDKLRPFFETLNYWGIHRKRTKIKCSACARLLGHVYDDGPPLTDSPGGF
XP_022145485.1 uncharacterized protein At4g08330, chloroplastic [Momordica charantia]2.3e-4283.84Show/hide
Query:  MASIYSCTACGANLNLNSGHLFPPDFYFEAGNKATLSFSSIDSSKFQFEHEDKLRPFFETLNYWGIHRKRTKIKCSACARLLGHVYDDGPPLTDSPGGF
        MASIY CT CGA+LNL+SGHLFPPDFYFEAGNK TLSFSSIDS+KF+ E EDKLRPFFETLNYWGI RKRTKIKC AC  L+G+VYDDGPPLTDSPG F
Subjt:  MASIYSCTACGANLNLNSGHLFPPDFYFEAGNKATLSFSSIDSSKFQFEHEDKLRPFFETLNYWGIHRKRTKIKCSACARLLGHVYDDGPPLTDSPGGF
XP_022965335.1 uncharacterized protein LOC111465232 isoform X1 [Cucurbita maxima]2.3e-4284.54Show/hide
Query:  MASIYSCTACGANLNLNSGHLFPPDFYFEAGNKATLSFSSIDSSKFQFEHEDKLRPFFETLNYWGIHRKRTKIKCSACARLLGHVYDDGPPLTDSPG
        MASIYSC  CGANLNLNS HLFPPDFYFEAGNK TLSFS IDS+KF+ E EDKLRPFFET+NYWGI RKRTKIKC++CARL+G+VYDDGPPLTDSPG
Subjt:  MASIYSCTACGANLNLNSGHLFPPDFYFEAGNKATLSFSSIDSSKFQFEHEDKLRPFFETLNYWGIHRKRTKIKCSACARLLGHVYDDGPPLTDSPG
XP_022965337.1 uncharacterized protein LOC111465232 isoform X2 [Cucurbita maxima]1.8e-4282.83Show/hide
Query:  MASIYSCTACGANLNLNSGHLFPPDFYFEAGNKATLSFSSIDSSKFQFEHEDKLRPFFETLNYWGIHRKRTKIKCSACARLLGHVYDDGPPLTDSPGGF
        MASIYSC  CGANLNLNS HLFPPDFYFEAGNK TLSFS IDS+KF+ E EDKLRPFFET+NYWGI RKRTKIKC++CARL+G+VYDDGPPLTDSPG +
Subjt:  MASIYSCTACGANLNLNSGHLFPPDFYFEAGNKATLSFSSIDSSKFQFEHEDKLRPFFETLNYWGIHRKRTKIKCSACARLLGHVYDDGPPLTDSPGGF
TrEMBL top hitse value%identityAlignment
A0A0A0L4W0 Uncharacterized protein4.3e-4281.82Show/hide
Query:  MASIYSCTACGANLNLNSGHLFPPDFYFEAGNKATLSFSSIDSSKFQFEHEDKLRPFFETLNYWGIHRKRTKIKCSACARLLGHVYDDGPPLTDSPGGF
        MASIYSCT CG NLNLNS HLFPPDFYFEAGNK TLSFS IDS+KF+ E EDKLRPFFETLNYWGI RKRTK+KC++C  L+G+VYDDGPPLTDSPG F
Subjt:  MASIYSCTACGANLNLNSGHLFPPDFYFEAGNKATLSFSSIDSSKFQFEHEDKLRPFFETLNYWGIHRKRTKIKCSACARLLGHVYDDGPPLTDSPGGF
A0A2I4HBZ1 uncharacterized protein LOC1090156632.5e-4280.81Show/hide
Query:  MASIYSCTACGANLNLNSGHLFPPDFYFEAGNKATLSFSSIDSSKFQFEHEDKLRPFFETLNYWGIHRKRTKIKCSACARLLGHVYDDGPPLTDSPGGF
        MASIYSCT CG NLNL + HLFPPDFYFEAGNK TLSFSS+D SKF+FE EDK+RPFFET+NYWGI RKRTKIKC++C RL+G+VYDDGPPLTDSPG F
Subjt:  MASIYSCTACGANLNLNSGHLFPPDFYFEAGNKATLSFSSIDSSKFQFEHEDKLRPFFETLNYWGIHRKRTKIKCSACARLLGHVYDDGPPLTDSPGGF
A0A6J1CUL5 uncharacterized protein At4g08330, chloroplastic1.1e-4283.84Show/hide
Query:  MASIYSCTACGANLNLNSGHLFPPDFYFEAGNKATLSFSSIDSSKFQFEHEDKLRPFFETLNYWGIHRKRTKIKCSACARLLGHVYDDGPPLTDSPGGF
        MASIY CT CGA+LNL+SGHLFPPDFYFEAGNK TLSFSSIDS+KF+ E EDKLRPFFETLNYWGI RKRTKIKC AC  L+G+VYDDGPPLTDSPG F
Subjt:  MASIYSCTACGANLNLNSGHLFPPDFYFEAGNKATLSFSSIDSSKFQFEHEDKLRPFFETLNYWGIHRKRTKIKCSACARLLGHVYDDGPPLTDSPGGF
A0A6J1HK24 uncharacterized protein LOC111465232 isoform X28.7e-4382.83Show/hide
Query:  MASIYSCTACGANLNLNSGHLFPPDFYFEAGNKATLSFSSIDSSKFQFEHEDKLRPFFETLNYWGIHRKRTKIKCSACARLLGHVYDDGPPLTDSPGGF
        MASIYSC  CGANLNLNS HLFPPDFYFEAGNK TLSFS IDS+KF+ E EDKLRPFFET+NYWGI RKRTKIKC++CARL+G+VYDDGPPLTDSPG +
Subjt:  MASIYSCTACGANLNLNSGHLFPPDFYFEAGNKATLSFSSIDSSKFQFEHEDKLRPFFETLNYWGIHRKRTKIKCSACARLLGHVYDDGPPLTDSPGGF
A0A6J1HNE5 uncharacterized protein LOC111465232 isoform X11.1e-4284.54Show/hide
Query:  MASIYSCTACGANLNLNSGHLFPPDFYFEAGNKATLSFSSIDSSKFQFEHEDKLRPFFETLNYWGIHRKRTKIKCSACARLLGHVYDDGPPLTDSPG
        MASIYSC  CGANLNLNS HLFPPDFYFEAGNK TLSFS IDS+KF+ E EDKLRPFFET+NYWGI RKRTKIKC++CARL+G+VYDDGPPLTDSPG
Subjt:  MASIYSCTACGANLNLNSGHLFPPDFYFEAGNKATLSFSSIDSSKFQFEHEDKLRPFFETLNYWGIHRKRTKIKCSACARLLGHVYDDGPPLTDSPG
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G17705.1 unknown protein6.4e-3866.33Show/hide
Query:  ASIYSCTACGANLNLNSGHLFPPDFYFEAGNKATLSFSSIDSSKFQFEHEDKLRPFFETLNYWGIHRKRTKIKCSACARLLGHVYDDGPPLTDSPGGF
        ++IY+C  CG++LNLN   LFPPDFYFEAGNK TLSF+++D+ KF+FE EDK+ PFFETLNYWGI RKRTKIKC++C  L+G++YDDGPPLT   G +
Subjt:  ASIYSCTACGANLNLNSGHLFPPDFYFEAGNKATLSFSSIDSSKFQFEHEDKLRPFFETLNYWGIHRKRTKIKCSACARLLGHVYDDGPPLTDSPGGF

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTTCCATCTACTCCTGTACAGCATGCGGAGCAAATCTGAATCTCAACTCCGGCCACCTCTTCCCGCCGGATTTCTACTTCGAGGCCGGAAACAAGGCCACCCTCTC
CTTCTCCTCCATCGACTCCTCCAAGTTCCAGTTCGAGCACGAGGACAAGCTCCGCCCCTTCTTCGAGACCCTCAACTACTGGGGGATCCACCGCAAGCGCACCAAGATCA
AGTGCAGCGCCTGCGCCCGTCTCCTCGGCCACGTTTACGACGACGGACCTCCCCTCACCGACAGCCCAGGTGGTTTTGATGGAAATGGAAGAAAAAGGGAAGAAGCTGGC
CAAATTGAGGATCATGGAGAAAAGACAAAGAGAACTAAAACTAAGAGCCTAAATGATCATCTTTTTGGTTATCAAGTCTCTTGA
mRNA sequenceShow/hide mRNA sequence
GTTGAACTTCCTCCAGCTTTCTCTCCTTTCCTCCTTTCCTCCTTTCAAACTCCAAAAACCGATAAATCTTCTATTTGTACCTCCTTGACTAATTCCTCTCCAAGACAAGC
AAAGGCCACTTCCCAATTTGAACAACAGAACCTTCCTTCAATCTTCCATTCAAACATTCTCAATTTTCTGTTGTTCTTCACTCATCCAAATCCCAAATCCCAAATGCCCT
ACTCTCCTTGAAGCTTCTCCATTTCTCCCCATCCCCAGCCATGGCTTCCATCTACTCCTGTACAGCATGCGGAGCAAATCTGAATCTCAACTCCGGCCACCTCTTCCCGC
CGGATTTCTACTTCGAGGCCGGAAACAAGGCCACCCTCTCCTTCTCCTCCATCGACTCCTCCAAGTTCCAGTTCGAGCACGAGGACAAGCTCCGCCCCTTCTTCGAGACC
CTCAACTACTGGGGGATCCACCGCAAGCGCACCAAGATCAAGTGCAGCGCCTGCGCCCGTCTCCTCGGCCACGTTTACGACGACGGACCTCCCCTCACCGACAGCCCAGG
TGGTTTTGATGGAAATGGAAGAAAAAGGGAAGAAGCTGGCCAAATTGAGGATCATGGAGAAAAGACAAAGAGAACTAAAACTAAGAGCCTAAATGATCATCTTTTTGGTT
ATCAAGTCTCTTGAATGGATTTTCAACACCTTTCATCACTTCAAAATAGTAAAAAAAACAGAAGCAGAGAGATCTCAGAGAAGGCTCAAGCAATGTAAGTATGCTCCGAC
ATGTCGATCTTAACACAACTGCAAACTATTGCAAGGAAGAAAAATCCAACCATTAACATTTGAAATGATCACAAGTGTCCTATCAATTGAACTGTGCCATGTGTCATCTA
TGAACTTTCTGGAATATAACACTATTTTAGGGCAAAAGAACAGTTTTGTTGATGAATTTTGACATTTGTCTCATTTTAGTTATGC
Protein sequenceShow/hide protein sequence
MASIYSCTACGANLNLNSGHLFPPDFYFEAGNKATLSFSSIDSSKFQFEHEDKLRPFFETLNYWGIHRKRTKIKCSACARLLGHVYDDGPPLTDSPGGFDGNGRKREEAG
QIEDHGEKTKRTKTKSLNDHLFGYQVS