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Sed0013299 (gene) of Chayote v1 genome

Gene IDSed0013299
OrganismSechium edule (Chayote v1)
DescriptionPsbX domain-containing protein
Genome locationLG12:28406822..28407094
RNA-Seq ExpressionSed0013299
SyntenySed0013299
Gene Ontology termsGO:0016020 - membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7023687.1 Mechanosensitive ion channel protein 10, partial [Cucurbita argyrosperma subsp. argyrosperma]2.3e-0654.43Show/hide
Query:  MASTTVVSMALPFTSATN---------NYPPTTPSSRSCKAITS--STNGRLIVVQTTLKEKAVTGLTTAALTAAMVIP
        MAST+ VS+ALP T+AT+         N  P + SSRS KAI +  ++NG L+ V+++LKEKA+TGLT AALTA+MVIP
Subjt:  MASTTVVSMALPFTSATN---------NYPPTTPSSRSCKAITS--STNGRLIVVQTTLKEKAVTGLTTAALTAAMVIP

XP_008450907.1 PREDICTED: uncharacterized protein LOC103492356 [Cucumis melo]1.7e-0451.32Show/hide
Query:  MASTTVVSMALPFTSATNN------YPPTTPSSRSCKAITSS--TNGRLIVVQTTLKEKAVTGLTTAALTAAMVIP
        MAST+ VSMALPFT AT+       +    PS +S K I ++  +NGR++ V+++LKEKAV G+T AAL A+MVIP
Subjt:  MASTTVVSMALPFTSATNN------YPPTTPSSRSCKAITSS--TNGRLIVVQTTLKEKAVTGLTTAALTAAMVIP

XP_022960741.1 uncharacterized protein LOC111461452 [Cucurbita moschata]1.8e-0654.43Show/hide
Query:  MASTTVVSMALPFTSATN---------NYPPTTPSSRSCKAITS--STNGRLIVVQTTLKEKAVTGLTTAALTAAMVIP
        MAST+ VS+ALP T+AT+         N  P + SSRS KAI +  +++GRL+ V+++LKEKA+TGLT AALTA+MVIP
Subjt:  MASTTVVSMALPFTSATN---------NYPPTTPSSRSCKAITS--STNGRLIVVQTTLKEKAVTGLTTAALTAAMVIP

XP_022987287.1 uncharacterized protein LOC111484883 [Cucurbita maxima]4.0e-0653.16Show/hide
Query:  MASTTVVSMALPFTSATN---------NYPPTTPSSRSCKAITS--STNGRLIVVQTTLKEKAVTGLTTAALTAAMVIP
        MAST+ VS+ALP T+AT+         N  P +PSSR  KAI +  ++NGRL+ V+++LKEKA+TG++ AALTA+MVIP
Subjt:  MASTTVVSMALPFTSATN---------NYPPTTPSSRSCKAITS--STNGRLIVVQTTLKEKAVTGLTTAALTAAMVIP

XP_023516825.1 uncharacterized protein LOC111780616 [Cucurbita pepo subsp. pepo]3.3e-0555.7Show/hide
Query:  MASTTVVSMALPFTSATN---------NYPPTTPSSRSCKAITS--STNGRLIVVQTTLKEKAVTGLTTAALTAAMVIP
        MAST+ VS+ALP TSAT+         N  P + SSRS KAI    ++NGRL+ V+++LK KA+TGLT AALTA+MVIP
Subjt:  MASTTVVSMALPFTSATN---------NYPPTTPSSRSCKAITS--STNGRLIVVQTTLKEKAVTGLTTAALTAAMVIP

TrEMBL top hitse value%identityAlignment
A0A1S3BRD2 uncharacterized protein LOC1034923568.0e-0551.32Show/hide
Query:  MASTTVVSMALPFTSATNN------YPPTTPSSRSCKAITSS--TNGRLIVVQTTLKEKAVTGLTTAALTAAMVIP
        MAST+ VSMALPFT AT+       +    PS +S K I ++  +NGR++ V+++LKEKAV G+T AAL A+MVIP
Subjt:  MASTTVVSMALPFTSATNN------YPPTTPSSRSCKAITSS--TNGRLIVVQTTLKEKAVTGLTTAALTAAMVIP

A0A2P5WHI8 Uncharacterized protein5.2e-0451.95Show/hide
Query:  MASTTVVSMALPFTSATNNYPPTT-------PSSRSCKAITSSTNGRLIV--VQTTLKEKAVTGLTTAALTAAMVIP
        MAST+ VSMALP T AT N  P +       P   S    T+++NGRL V    ++LK+KAVTGLT AA+TA+MVIP
Subjt:  MASTTVVSMALPFTSATNNYPPTT-------PSSRSCKAITSSTNGRLIV--VQTTLKEKAVTGLTTAALTAAMVIP

A0A5D2QCB1 Uncharacterized protein5.2e-0451.95Show/hide
Query:  MASTTVVSMALPFTSATNNYPPTT-------PSSRSCKAITSSTNGRLIV--VQTTLKEKAVTGLTTAALTAAMVIP
        MAST+ VSMALP T AT N  P +       P   S    T+++NGRL V    ++LK+KAVTGLT AA+TA+MVIP
Subjt:  MASTTVVSMALPFTSATNNYPPTT-------PSSRSCKAITSSTNGRLIV--VQTTLKEKAVTGLTTAALTAAMVIP

A0A6J1H8G2 uncharacterized protein LOC1114614528.6e-0754.43Show/hide
Query:  MASTTVVSMALPFTSATN---------NYPPTTPSSRSCKAITS--STNGRLIVVQTTLKEKAVTGLTTAALTAAMVIP
        MAST+ VS+ALP T+AT+         N  P + SSRS KAI +  +++GRL+ V+++LKEKA+TGLT AALTA+MVIP
Subjt:  MASTTVVSMALPFTSATN---------NYPPTTPSSRSCKAITS--STNGRLIVVQTTLKEKAVTGLTTAALTAAMVIP

A0A6J1J9Y5 uncharacterized protein LOC1114848831.9e-0653.16Show/hide
Query:  MASTTVVSMALPFTSATN---------NYPPTTPSSRSCKAITS--STNGRLIVVQTTLKEKAVTGLTTAALTAAMVIP
        MAST+ VS+ALP T+AT+         N  P +PSSR  KAI +  ++NGRL+ V+++LKEKA+TG++ AALTA+MVIP
Subjt:  MASTTVVSMALPFTSATN---------NYPPTTPSSRSCKAITS--STNGRLIVVQTTLKEKAVTGLTTAALTAAMVIP

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTTCCACCACCGTCGTTTCAATGGCTCTTCCATTCACCTCCGCCACCAACAACTACCCTCCGACAACGCCTTCTTCCCGATCTTGCAAGGCCATCACCAGCAGCAC
CAACGGGAGGCTCATCGTAGTCCAAACAACTTTGAAAGAGAAGGCCGTCACTGGACTTACCACGGCGGCACTGACGGCGGCCATGGTGATTCCGGTGGGAGCTGTGGTGA
GGTGTTCGCCTTATTGGGAGCTGTCATTGGCGTCTCCAATTTCGATCCGGTAA
mRNA sequenceShow/hide mRNA sequence
ATGGCTTCCACCACCGTCGTTTCAATGGCTCTTCCATTCACCTCCGCCACCAACAACTACCCTCCGACAACGCCTTCTTCCCGATCTTGCAAGGCCATCACCAGCAGCAC
CAACGGGAGGCTCATCGTAGTCCAAACAACTTTGAAAGAGAAGGCCGTCACTGGACTTACCACGGCGGCACTGACGGCGGCCATGGTGATTCCGGTGGGAGCTGTGGTGA
GGTGTTCGCCTTATTGGGAGCTGTCATTGGCGTCTCCAATTTCGATCCGGTAA
Protein sequenceShow/hide protein sequence
MASTTVVSMALPFTSATNNYPPTTPSSRSCKAITSSTNGRLIVVQTTLKEKAVTGLTTAALTAAMVIPVGAVVRCSPYWELSLASPISIR