CuGenDBv2

Gene ID	Sed0013319
Organism	Sechium edule (Chayote v1)
Description	large ribosomal RNA subunit accumulation protein YCED homolog 1, chloroplastic-like
Genome location	LG07:2326604..2330524
RNA-Seq Expression	Sed0013319
Synteny	Sed0013319
Gene Ontology terms	GO:0009507 - chloroplast (cellular component)
InterPro domains	IPR003772 - Large ribosomal RNA subunit accumulation protein YceD

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0067976.1 uncharacterized protein E6C27_scaffold138G001640 [Cucumis melo var. makuwa]

4.9e-147

80.31

Show/hide

Query:  MPATFPISSILSSSHSNGVIKICCLKSKGNASFNPHFCFVDCKVPWTLKKDVKPRLGRDPYFVLKSTSLNCVKPTYQSFFEDKTIITDWDGQEGDIEEMG
        M ATFP SS++SSSHS   I +   KSKGN SFN HF     +VPW   ++++P LG DP   +KSTS+ CVKPTYQS FED +IITDW  QEGDIEEMG
Subjt:  MPATFPISSILSSSHSNGVIKICCLKSKGNASFNPHFCFVDCKVPWTLKKDVKPRLGRDPYFVLKSTSLNCVKPTYQSFFEDKTIITDWDGQEGDIEEMG

Query:  SPWEGAVVYRRNTSVSHVEYCTTLERLGLEKLSTDVSKSRASKMGLRITKTVKDYPSGTPVQISVDVTRKEKKLRLDGIVKTVITLNCYRCCEPAPECIF
        SPWEGAV+Y+RN+SVSHVEYCTTLERLGLEKLSTDVSKSRAS MGLR+TK VKDYP GTPVQISVDVTRK+KKLRLDGIVKTVITLNCYRCCEPAPECIF
Subjt:  SPWEGAVVYRRNTSVSHVEYCTTLERLGLEKLSTDVSKSRASKMGLRITKTVKDYPSGTPVQISVDVTRKEKKLRLDGIVKTVITLNCYRCCEPAPECIF

Query:  SNFSIILSEEPIEEPEVINMGIISGQDIFKTYDGNSDEDDEELIDLDDQLYFPLVEKEIDISKNIRDILHLEITLNAICDPGCQGMCLKCGINLNTGSCN
        SNFSI+LSEEPIEEP+VINMGIISGQDIFKT +GNSDEDDEE +DLDDQLYFP V+KEIDISKNIRDILHLEIT+N IC+PGC+GMCL CGINLNTGSCN
Subjt:  SNFSIILSEEPIEEPEVINMGIISGQDIFKTYDGNSDEDDEELIDLDDQLYFPLVEKEIDISKNIRDILHLEITLNAICDPGCQGMCLKCGINLNTGSCN

Query:  CSKQDVKKNNFGPLGNLKRQMQNNS
        CSKQ VKKN+FGPLGNLKR+MQNNS
Subjt:  CSKQDVKKNNFGPLGNLKRQMQNNS

TYK18147.1 uncharacterized protein E5676_scaffold411G00780 [Cucumis melo var. makuwa]

1.3e-144

79.38

Show/hide

Query:  MPATFPISSILSSSHSNGVIKICCLKSKGNASFNPHFCFVDCKVPWTLKKDVKPRLGRDPYFVLKSTSLNCVKPTYQSFFEDKTIITDWDGQEGDIEEMG
        M ATFP SS++SSSHS   I +   KSKGN SFN        + PW   ++++P LG DP   +KSTS+ CVKPTYQS FED +IITDW  QEGDIEEMG
Subjt:  MPATFPISSILSSSHSNGVIKICCLKSKGNASFNPHFCFVDCKVPWTLKKDVKPRLGRDPYFVLKSTSLNCVKPTYQSFFEDKTIITDWDGQEGDIEEMG

Query:  SPWEGAVVYRRNTSVSHVEYCTTLERLGLEKLSTDVSKSRASKMGLRITKTVKDYPSGTPVQISVDVTRKEKKLRLDGIVKTVITLNCYRCCEPAPECIF
        SPWEGAV+Y+RN+SVSHVEYCTTLERLGLEKLSTDVSKSRAS MGLR+TK VKDYP GTPVQISVDVTRK+KKLRLDGIVKTVITLNCYRCCEPAPECIF
Subjt:  SPWEGAVVYRRNTSVSHVEYCTTLERLGLEKLSTDVSKSRASKMGLRITKTVKDYPSGTPVQISVDVTRKEKKLRLDGIVKTVITLNCYRCCEPAPECIF

Query:  SNFSIILSEEPIEEPEVINMGIISGQDIFKTYDGNSDEDDEELIDLDDQLYFPLVEKEIDISKNIRDILHLEITLNAICDPGCQGMCLKCGINLNTGSCN
        SNFSI+LSEEPIEEP+VINMGIISGQDIFKT +GNSDEDDEE +DLDDQLYFP V+KEIDISKNIRDILHLEIT+N IC+PGC+GMCL CGINLNTGSCN
Subjt:  SNFSIILSEEPIEEPEVINMGIISGQDIFKTYDGNSDEDDEELIDLDDQLYFPLVEKEIDISKNIRDILHLEITLNAICDPGCQGMCLKCGINLNTGSCN

Query:  CSKQDVKKNNFGPLGNLKRQMQNNS
        CSKQ VKKN+FGPLGNLKR+MQNNS
Subjt:  CSKQDVKKNNFGPLGNLKRQMQNNS

XP_008451550.1 PREDICTED: uncharacterized protein LOC103492797 isoform X1 [Cucumis melo]

7.0e-146

79.69

Show/hide

Query:  MPATFPISSILSSSHSNGVIKICCLKSKGNASFNPHFCFVDCKVPWTLKKDVKPRLGRDPYFVLKSTSLNCVKPTYQSFFEDKTIITDWDGQEGDIEEMG
        M ATFP SS++SSSHS   I +   +SKGN SFN HF     +VPW   ++++P LG DP   +KSTS+ CVKPTYQS FED +IITDW  QEGDIEEM 
Subjt:  MPATFPISSILSSSHSNGVIKICCLKSKGNASFNPHFCFVDCKVPWTLKKDVKPRLGRDPYFVLKSTSLNCVKPTYQSFFEDKTIITDWDGQEGDIEEMG

Query:  SPWEGAVVYRRNTSVSHVEYCTTLERLGLEKLSTDVSKSRASKMGLRITKTVKDYPSGTPVQISVDVTRKEKKLRLDGIVKTVITLNCYRCCEPAPECIF
        SPWEGAV+Y+RN+SVSHVEYCTTLERLGLEKLSTDVSKSRAS MGLR+TK VKDYP GTPVQISVDVTRK+KKLRLDGIVKTVITLNCYRCCEPAPECIF
Subjt:  SPWEGAVVYRRNTSVSHVEYCTTLERLGLEKLSTDVSKSRASKMGLRITKTVKDYPSGTPVQISVDVTRKEKKLRLDGIVKTVITLNCYRCCEPAPECIF

Query:  SNFSIILSEEPIEEPEVINMGIISGQDIFKTYDGNSDEDDEELIDLDDQLYFPLVEKEIDISKNIRDILHLEITLNAICDPGCQGMCLKCGINLNTGSCN
        SNFSI+LSEEPIEEP+VINMGIISGQDIFKT +GNSDEDDEE +DLDDQLYFP V+KEIDISKNIRDILHLEIT+N IC+PGC+GMCL CGINLNTGSCN
Subjt:  SNFSIILSEEPIEEPEVINMGIISGQDIFKTYDGNSDEDDEELIDLDDQLYFPLVEKEIDISKNIRDILHLEITLNAICDPGCQGMCLKCGINLNTGSCN

Query:  CSKQDVKKNNFGPLGNLKRQMQNNS
        CSKQ VKKN+FGPLGNLKR+MQNNS
Subjt:  CSKQDVKKNNFGPLGNLKRQMQNNS

XP_008451552.1 PREDICTED: uncharacterized protein LOC103492797 isoform X2 [Cucumis melo]

7.0e-146

79.69

Show/hide

Query:  MPATFPISSILSSSHSNGVIKICCLKSKGNASFNPHFCFVDCKVPWTLKKDVKPRLGRDPYFVLKSTSLNCVKPTYQSFFEDKTIITDWDGQEGDIEEMG
        M ATFP SS++SSSHS   I +   +SKGN SFN HF     +VPW   ++++P LG DP   +KSTS+ CVKPTYQS FED +IITDW  QEGDIEEM 
Subjt:  MPATFPISSILSSSHSNGVIKICCLKSKGNASFNPHFCFVDCKVPWTLKKDVKPRLGRDPYFVLKSTSLNCVKPTYQSFFEDKTIITDWDGQEGDIEEMG

Query:  SPWEGAVVYRRNTSVSHVEYCTTLERLGLEKLSTDVSKSRASKMGLRITKTVKDYPSGTPVQISVDVTRKEKKLRLDGIVKTVITLNCYRCCEPAPECIF
        SPWEGAV+Y+RN+SVSHVEYCTTLERLGLEKLSTDVSKSRAS MGLR+TK VKDYP GTPVQISVDVTRK+KKLRLDGIVKTVITLNCYRCCEPAPECIF
Subjt:  SPWEGAVVYRRNTSVSHVEYCTTLERLGLEKLSTDVSKSRASKMGLRITKTVKDYPSGTPVQISVDVTRKEKKLRLDGIVKTVITLNCYRCCEPAPECIF

Query:  SNFSIILSEEPIEEPEVINMGIISGQDIFKTYDGNSDEDDEELIDLDDQLYFPLVEKEIDISKNIRDILHLEITLNAICDPGCQGMCLKCGINLNTGSCN
        SNFSI+LSEEPIEEP+VINMGIISGQDIFKT +GNSDEDDEE +DLDDQLYFP V+KEIDISKNIRDILHLEIT+N IC+PGC+GMCL CGINLNTGSCN
Subjt:  SNFSIILSEEPIEEPEVINMGIISGQDIFKTYDGNSDEDDEELIDLDDQLYFPLVEKEIDISKNIRDILHLEITLNAICDPGCQGMCLKCGINLNTGSCN

Query:  CSKQDVKKNNFGPLGNLKRQMQNNS
        CSKQ VKKN+FGPLGNLKR+MQNNS
Subjt:  CSKQDVKKNNFGPLGNLKRQMQNNS

XP_038897008.1 large ribosomal RNA subunit accumulation protein YCED homolog 1, chloroplastic-like [Benincasa hispida]

6.8e-149

81.54

Show/hide

Query:  MPATFPISSILSSSHSNGVIKICCLKSKGNASFNPHFCFVDCKVPWTLKKDVKPRLGRDPYFVLKSTSLNCVKPTYQSFFEDKTIITDWDGQEGDIEEMG
        M ATFP SS++SSSHSN  IK+  LKSKGN SF+ H     C+VPW   ++++P LG D   +LKSTS+ CVKPTYQS FED +IITDW+  +GDIEEMG
Subjt:  MPATFPISSILSSSHSNGVIKICCLKSKGNASFNPHFCFVDCKVPWTLKKDVKPRLGRDPYFVLKSTSLNCVKPTYQSFFEDKTIITDWDGQEGDIEEMG

Query:  SPWEGAVVYRRNTSVSHVEYCTTLERLGLEKLSTDVSKSRASKMGLRITKTVKDYPSGTPVQISVDVTRKEKKLRLDGIVKTVITLNCYRCCEPAPECIF
        SPWEGAV+Y+RN+SVSHVEYCTTLERLGLEKLSTDVSKSRAS MGLR+ K VKDYP GTPVQISVDVTRKEKKLRLDGIVKTVITLNCYRCCE APECIF
Subjt:  SPWEGAVVYRRNTSVSHVEYCTTLERLGLEKLSTDVSKSRASKMGLRITKTVKDYPSGTPVQISVDVTRKEKKLRLDGIVKTVITLNCYRCCEPAPECIF

Query:  SNFSIILSEEPIEEPEVINMGIISGQDIFKTYDGNSDEDDEELIDLDDQLYFPLVEKEIDISKNIRDILHLEITLNAICDPGCQGMCLKCGINLNTGSCN
        SNFSIILSEEPIEEP+VINMGIISGQD+FKTYDGNSDEDDEEL+DLDDQLYFPL+EKEIDISKNIRDILHLEIT+NAICDPGC+GMCL CGINLNTGSCN
Subjt:  SNFSIILSEEPIEEPEVINMGIISGQDIFKTYDGNSDEDDEELIDLDDQLYFPLVEKEIDISKNIRDILHLEITLNAICDPGCQGMCLKCGINLNTGSCN

Query:  CSKQDVKKNNFGPLGNLKRQMQNNS
        CSKQ VKKN+FGPLGNLK+QMQ NS
Subjt:  CSKQDVKKNNFGPLGNLKRQMQNNS

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KAY7 Uncharacterized protein

9.3e-144

78.46

Show/hide

Query:  MPATFPISSILSSSHSNGVIKICCLKSKGNASFNPHFCFVDCKVPWTLKKDVKPRLGRDPYFVLKSTSLNCVKPTYQSFFEDKTIITDWDGQEGDIEEMG
        M ATFP SS++SSSHSN  I +   KSKG  SF+ HF     +VPW L ++++P LG DP   +KST++ CVKPTYQS FED +IITDW+ QEGDIEEM 
Subjt:  MPATFPISSILSSSHSNGVIKICCLKSKGNASFNPHFCFVDCKVPWTLKKDVKPRLGRDPYFVLKSTSLNCVKPTYQSFFEDKTIITDWDGQEGDIEEMG

Query:  SPWEGAVVYRRNTSVSHVEYCTTLERLGLEKLSTDVSKSRASKMGLRITKTVKDYPSGTPVQISVDVTRKEKKLRLDGIVKTVITLNCYRCCEPAPECIF
        SPWEGA++Y+RN+SVSHVEYCTTLERLGLEKLSTDVSKSRAS MGLR+TK VKDYP GTPVQISVDVTRK KKLRLDGIVKTVITLNCY CCEPAPECIF
Subjt:  SPWEGAVVYRRNTSVSHVEYCTTLERLGLEKLSTDVSKSRASKMGLRITKTVKDYPSGTPVQISVDVTRKEKKLRLDGIVKTVITLNCYRCCEPAPECIF

Query:  SNFSIILSEEPIEEPEVINMGIISGQDIFKTYDGNSDEDDEELIDLDDQLYFPLVEKEIDISKNIRDILHLEITLNAICDPGCQGMCLKCGINLNTGSCN
        SNFSIILSEEPIEEP+VINMGIISG+D+FKT +GNSDEDDEELIDLDDQLYFP + KEIDISKNIRDILHLEIT+N ICDPGC+G+CL CGINLNTGSC 
Subjt:  SNFSIILSEEPIEEPEVINMGIISGQDIFKTYDGNSDEDDEELIDLDDQLYFPLVEKEIDISKNIRDILHLEITLNAICDPGCQGMCLKCGINLNTGSCN

Query:  CSKQDVKKNNFGPLGNLKRQMQNNS
        CSKQ VKKN+FGPLG+LKR+MQNNS
Subjt:  CSKQDVKKNNFGPLGNLKRQMQNNS

A0A1S3BR50 uncharacterized protein LOC103492797 isoform X2

3.4e-146

79.69

Show/hide

Query:  MPATFPISSILSSSHSNGVIKICCLKSKGNASFNPHFCFVDCKVPWTLKKDVKPRLGRDPYFVLKSTSLNCVKPTYQSFFEDKTIITDWDGQEGDIEEMG
        M ATFP SS++SSSHS   I +   +SKGN SFN HF     +VPW   ++++P LG DP   +KSTS+ CVKPTYQS FED +IITDW  QEGDIEEM 
Subjt:  MPATFPISSILSSSHSNGVIKICCLKSKGNASFNPHFCFVDCKVPWTLKKDVKPRLGRDPYFVLKSTSLNCVKPTYQSFFEDKTIITDWDGQEGDIEEMG

Query:  SPWEGAVVYRRNTSVSHVEYCTTLERLGLEKLSTDVSKSRASKMGLRITKTVKDYPSGTPVQISVDVTRKEKKLRLDGIVKTVITLNCYRCCEPAPECIF
        SPWEGAV+Y+RN+SVSHVEYCTTLERLGLEKLSTDVSKSRAS MGLR+TK VKDYP GTPVQISVDVTRK+KKLRLDGIVKTVITLNCYRCCEPAPECIF
Subjt:  SPWEGAVVYRRNTSVSHVEYCTTLERLGLEKLSTDVSKSRASKMGLRITKTVKDYPSGTPVQISVDVTRKEKKLRLDGIVKTVITLNCYRCCEPAPECIF

Query:  SNFSIILSEEPIEEPEVINMGIISGQDIFKTYDGNSDEDDEELIDLDDQLYFPLVEKEIDISKNIRDILHLEITLNAICDPGCQGMCLKCGINLNTGSCN
        SNFSI+LSEEPIEEP+VINMGIISGQDIFKT +GNSDEDDEE +DLDDQLYFP V+KEIDISKNIRDILHLEIT+N IC+PGC+GMCL CGINLNTGSCN
Subjt:  SNFSIILSEEPIEEPEVINMGIISGQDIFKTYDGNSDEDDEELIDLDDQLYFPLVEKEIDISKNIRDILHLEITLNAICDPGCQGMCLKCGINLNTGSCN

Query:  CSKQDVKKNNFGPLGNLKRQMQNNS
        CSKQ VKKN+FGPLGNLKR+MQNNS
Subjt:  CSKQDVKKNNFGPLGNLKRQMQNNS

A0A1S3BSU8 uncharacterized protein LOC103492797 isoform X1

3.4e-146

79.69

Show/hide

Query:  MPATFPISSILSSSHSNGVIKICCLKSKGNASFNPHFCFVDCKVPWTLKKDVKPRLGRDPYFVLKSTSLNCVKPTYQSFFEDKTIITDWDGQEGDIEEMG
        M ATFP SS++SSSHS   I +   +SKGN SFN HF     +VPW   ++++P LG DP   +KSTS+ CVKPTYQS FED +IITDW  QEGDIEEM 
Subjt:  MPATFPISSILSSSHSNGVIKICCLKSKGNASFNPHFCFVDCKVPWTLKKDVKPRLGRDPYFVLKSTSLNCVKPTYQSFFEDKTIITDWDGQEGDIEEMG

Query:  SPWEGAVVYRRNTSVSHVEYCTTLERLGLEKLSTDVSKSRASKMGLRITKTVKDYPSGTPVQISVDVTRKEKKLRLDGIVKTVITLNCYRCCEPAPECIF
        SPWEGAV+Y+RN+SVSHVEYCTTLERLGLEKLSTDVSKSRAS MGLR+TK VKDYP GTPVQISVDVTRK+KKLRLDGIVKTVITLNCYRCCEPAPECIF
Subjt:  SPWEGAVVYRRNTSVSHVEYCTTLERLGLEKLSTDVSKSRASKMGLRITKTVKDYPSGTPVQISVDVTRKEKKLRLDGIVKTVITLNCYRCCEPAPECIF

Query:  SNFSIILSEEPIEEPEVINMGIISGQDIFKTYDGNSDEDDEELIDLDDQLYFPLVEKEIDISKNIRDILHLEITLNAICDPGCQGMCLKCGINLNTGSCN
        SNFSI+LSEEPIEEP+VINMGIISGQDIFKT +GNSDEDDEE +DLDDQLYFP V+KEIDISKNIRDILHLEIT+N IC+PGC+GMCL CGINLNTGSCN
Subjt:  SNFSIILSEEPIEEPEVINMGIISGQDIFKTYDGNSDEDDEELIDLDDQLYFPLVEKEIDISKNIRDILHLEITLNAICDPGCQGMCLKCGINLNTGSCN

Query:  CSKQDVKKNNFGPLGNLKRQMQNNS
        CSKQ VKKN+FGPLGNLKR+MQNNS
Subjt:  CSKQDVKKNNFGPLGNLKRQMQNNS

A0A5A7VN29 Uncharacterized protein

2.4e-147

80.31

Show/hide

Query:  MPATFPISSILSSSHSNGVIKICCLKSKGNASFNPHFCFVDCKVPWTLKKDVKPRLGRDPYFVLKSTSLNCVKPTYQSFFEDKTIITDWDGQEGDIEEMG
        M ATFP SS++SSSHS   I +   KSKGN SFN HF     +VPW   ++++P LG DP   +KSTS+ CVKPTYQS FED +IITDW  QEGDIEEMG
Subjt:  MPATFPISSILSSSHSNGVIKICCLKSKGNASFNPHFCFVDCKVPWTLKKDVKPRLGRDPYFVLKSTSLNCVKPTYQSFFEDKTIITDWDGQEGDIEEMG

Query:  SPWEGAVVYRRNTSVSHVEYCTTLERLGLEKLSTDVSKSRASKMGLRITKTVKDYPSGTPVQISVDVTRKEKKLRLDGIVKTVITLNCYRCCEPAPECIF
        SPWEGAV+Y+RN+SVSHVEYCTTLERLGLEKLSTDVSKSRAS MGLR+TK VKDYP GTPVQISVDVTRK+KKLRLDGIVKTVITLNCYRCCEPAPECIF
Subjt:  SPWEGAVVYRRNTSVSHVEYCTTLERLGLEKLSTDVSKSRASKMGLRITKTVKDYPSGTPVQISVDVTRKEKKLRLDGIVKTVITLNCYRCCEPAPECIF

Query:  SNFSIILSEEPIEEPEVINMGIISGQDIFKTYDGNSDEDDEELIDLDDQLYFPLVEKEIDISKNIRDILHLEITLNAICDPGCQGMCLKCGINLNTGSCN
        SNFSI+LSEEPIEEP+VINMGIISGQDIFKT +GNSDEDDEE +DLDDQLYFP V+KEIDISKNIRDILHLEIT+N IC+PGC+GMCL CGINLNTGSCN
Subjt:  SNFSIILSEEPIEEPEVINMGIISGQDIFKTYDGNSDEDDEELIDLDDQLYFPLVEKEIDISKNIRDILHLEITLNAICDPGCQGMCLKCGINLNTGSCN

Query:  CSKQDVKKNNFGPLGNLKRQMQNNS
        CSKQ VKKN+FGPLGNLKR+MQNNS
Subjt:  CSKQDVKKNNFGPLGNLKRQMQNNS

A0A5D3D2J4 Uncharacterized protein

6.4e-145

79.38

Show/hide

Query:  MPATFPISSILSSSHSNGVIKICCLKSKGNASFNPHFCFVDCKVPWTLKKDVKPRLGRDPYFVLKSTSLNCVKPTYQSFFEDKTIITDWDGQEGDIEEMG
        M ATFP SS++SSSHS   I +   KSKGN SFN        + PW   ++++P LG DP   +KSTS+ CVKPTYQS FED +IITDW  QEGDIEEMG
Subjt:  MPATFPISSILSSSHSNGVIKICCLKSKGNASFNPHFCFVDCKVPWTLKKDVKPRLGRDPYFVLKSTSLNCVKPTYQSFFEDKTIITDWDGQEGDIEEMG

Query:  SPWEGAVVYRRNTSVSHVEYCTTLERLGLEKLSTDVSKSRASKMGLRITKTVKDYPSGTPVQISVDVTRKEKKLRLDGIVKTVITLNCYRCCEPAPECIF
        SPWEGAV+Y+RN+SVSHVEYCTTLERLGLEKLSTDVSKSRAS MGLR+TK VKDYP GTPVQISVDVTRK+KKLRLDGIVKTVITLNCYRCCEPAPECIF
Subjt:  SPWEGAVVYRRNTSVSHVEYCTTLERLGLEKLSTDVSKSRASKMGLRITKTVKDYPSGTPVQISVDVTRKEKKLRLDGIVKTVITLNCYRCCEPAPECIF

Query:  SNFSIILSEEPIEEPEVINMGIISGQDIFKTYDGNSDEDDEELIDLDDQLYFPLVEKEIDISKNIRDILHLEITLNAICDPGCQGMCLKCGINLNTGSCN
        SNFSI+LSEEPIEEP+VINMGIISGQDIFKT +GNSDEDDEE +DLDDQLYFP V+KEIDISKNIRDILHLEIT+N IC+PGC+GMCL CGINLNTGSCN
Subjt:  SNFSIILSEEPIEEPEVINMGIISGQDIFKTYDGNSDEDDEELIDLDDQLYFPLVEKEIDISKNIRDILHLEITLNAICDPGCQGMCLKCGINLNTGSCN

Query:  CSKQDVKKNNFGPLGNLKRQMQNNS
        CSKQ VKKN+FGPLGNLKR+MQNNS
Subjt:  CSKQDVKKNNFGPLGNLKRQMQNNS

SwissProt top hits

e value

%identity

Alignment

A0A1D6HQ92 Large ribosomal RNA subunit accumulation protein YCED homolog 1, chloroplastic

1.0e-54

49.79

Show/hide

Query:  FFEDKTIITDWDGQEGDIEE-MGSPWEGAVVYRRNTSVSHVEYCTTLERLGLEKLSTDVSKSRASKMGLR-ITKTVKDYPSGTPVQISVDVTRKEKKLRL
        FF  +   T  + +   I++ + SPWEGAVVYRR+ +V H+EY +TLERLGL  LS+  S++RA+ +GL   T         TPV +SVDVTR+  +LRL
Subjt:  FFEDKTIITDWDGQEGDIEE-MGSPWEGAVVYRRNTSVSHVEYCTTLERLGLEKLSTDVSKSRASKMGLR-ITKTVKDYPSGTPVQISVDVTRKEKKLRL

Query:  DGIVKTVITLNCYRCCEPAPECIFSNFSIILSEEPIEEPEVINMGIISGQDIFK-------TYDGNSDEDDEELIDLDDQLYFPLVEKEIDISKNIRDIL
        DGIV+TVITL C+RC EPAP+ IF+NFS++L+E+P+EE    ++G I  +D  K         DG+ D      ID DD+L+FP  +KEIDISK+IRD++
Subjt:  DGIVKTVITLNCYRCCEPAPECIFSNFSIILSEEPIEEPEVINMGIISGQDIFK-------TYDGNSDEDDEELIDLDDQLYFPLVEKEIDISKNIRDIL

Query:  HLEITLNAICDPGCQGMCLKCGINLN-TGSCNCSKQDVK
        HLEITL+A+C+P C+G+CL CG NLN T SC C  ++V+
Subjt:  HLEITLNAICDPGCQGMCLKCGINLN-TGSCNCSKQDVK

Q9LT27 Large ribosomal RNA subunit accumulation protein YCED homolog 1, chloroplastic

1.6e-84

63.82

Show/hide

Query:  QSFFEDKTIITDWDGQEGDIEEMGSPWEGAVVYRRNTSVSHVEYCTTLERLGLEKLSTDVSKSRASKMGLRITKTVKDYPSGTPVQISVDVTRKEKKLRL
        +SF E  TI  DW+ QE +IE+ GSPWEG+V+YRRN SV+HVEYCTTLERLGL +LSTDVSK RAS MGLR+TK VKDYP GTPVQ+SVDV RK+KKLRL
Subjt:  QSFFEDKTIITDWDGQEGDIEEMGSPWEGAVVYRRNTSVSHVEYCTTLERLGLEKLSTDVSKSRASKMGLRITKTVKDYPSGTPVQISVDVTRKEKKLRL

Query:  DGIVKTVITLNCYRCCEPAPECIFSNFSIILSEEPIEEPEVINMGIISGQDIFKTYDGNSDEDDEELIDLDDQLYFPLVEKEIDISKNIRDILHLEITLN
        DGIV+TVITL C RC E   E IFSNFS++L+EEP+EEP+VI++G   G D  K    + D++D+  ID +D+L+FP   KEIDISK+IRD++HLEIT+ 
Subjt:  DGIVKTVITLNCYRCCEPAPECIFSNFSIILSEEPIEEPEVINMGIISGQDIFKTYDGNSDEDDEELIDLDDQLYFPLVEKEIDISKNIRDILHLEITLN

Query:  AICDPGCQGMCLKCGINLNTGSCNCSKQDVKKNNFGPLGNLKRQMQ
        AICD  C+GMCLKCG NLN   C+C +++ K   +GPLGNL+ QMQ
Subjt:  AICDPGCQGMCLKCGINLNTGSCNCSKQDVKKNNFGPLGNLKRQMQ

Arabidopsis top hits

e value

%identity

Alignment

AT3G19810.1 Protein of unknown function (DUF177)

1.1e-85

63.82

Show/hide

Query:  QSFFEDKTIITDWDGQEGDIEEMGSPWEGAVVYRRNTSVSHVEYCTTLERLGLEKLSTDVSKSRASKMGLRITKTVKDYPSGTPVQISVDVTRKEKKLRL
        +SF E  TI  DW+ QE +IE+ GSPWEG+V+YRRN SV+HVEYCTTLERLGL +LSTDVSK RAS MGLR+TK VKDYP GTPVQ+SVDV RK+KKLRL
Subjt:  QSFFEDKTIITDWDGQEGDIEEMGSPWEGAVVYRRNTSVSHVEYCTTLERLGLEKLSTDVSKSRASKMGLRITKTVKDYPSGTPVQISVDVTRKEKKLRL

Query:  DGIVKTVITLNCYRCCEPAPECIFSNFSIILSEEPIEEPEVINMGIISGQDIFKTYDGNSDEDDEELIDLDDQLYFPLVEKEIDISKNIRDILHLEITLN
        DGIV+TVITL C RC E   E IFSNFS++L+EEP+EEP+VI++G   G D  K    + D++D+  ID +D+L+FP   KEIDISK+IRD++HLEIT+ 
Subjt:  DGIVKTVITLNCYRCCEPAPECIFSNFSIILSEEPIEEPEVINMGIISGQDIFKTYDGNSDEDDEELIDLDDQLYFPLVEKEIDISKNIRDILHLEITLN

Query:  AICDPGCQGMCLKCGINLNTGSCNCSKQDVKKNNFGPLGNLKRQMQ
        AICD  C+GMCLKCG NLN   C+C +++ K   +GPLGNL+ QMQ
Subjt:  AICDPGCQGMCLKCGINLNTGSCNCSKQDVKKNNFGPLGNLKRQMQ

Sequences

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CDS sequence

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ATGCCAGCTACATTTCCCATATCATCCATACTTTCATCTTCTCATTCCAATGGAGTTATTAAGATTTGCTGCTTGAAATCCAAAGGGAATGCTTCTTTCAATCCACATTT
CTGCTTTGTTGATTGTAAAGTTCCATGGACATTGAAGAAAGATGTTAAGCCAAGGTTGGGACGTGACCCATATTTTGTGCTGAAATCTACTTCCCTGAATTGTGTGAAAC
CTACTTATCAGTCATTTTTTGAAGACAAGACAATAATTACTGATTGGGATGGTCAAGAAGGGGACATTGAAGAGATGGGTTCACCTTGGGAAGGAGCAGTTGTTTACAGG
AGGAACACTTCAGTTTCTCATGTGGAGTATTGCACTACATTAGAGAGGCTTGGATTGGAAAAGCTTTCGACTGATGTCTCGAAATCTAGAGCGTCGAAGATGGGACTTCG
CATAACGAAGACTGTGAAGGATTATCCCTCTGGAACCCCGGTTCAAATCTCTGTTGACGTTACAAGGAAAGAAAAAAAGTTGAGGCTTGATGGGATTGTCAAAACTGTCA
TCACTCTCAATTGTTATAGGTGTTGTGAACCAGCTCCTGAATGCATTTTCTCAAATTTCTCAATTATACTAAGCGAAGAACCGATTGAAGAACCCGAGGTCATAAATATG
GGAATCATCAGCGGGCAGGATATATTCAAAACATATGATGGGAATAGTGATGAAGATGATGAAGAGTTGATTGATTTGGATGATCAACTCTATTTTCCTCTTGTGGAGAA
AGAAATAGATATATCAAAGAACATAAGAGACATCTTGCATCTAGAAATTACTCTGAATGCGATATGCGATCCGGGATGCCAAGGTATGTGTCTGAAATGTGGTATAAATT
TGAATACTGGAAGCTGTAACTGTAGTAAGCAGGATGTAAAGAAGAACAATTTTGGTCCTCTAGGAAACTTGAAAAGGCAAATGCAGAATAATTCTTAA

mRNA sequence

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ATTTTATTAAAAGGTAAACAAATAACCCTATCTTCTCTGCACAGTCCGCTCTCTCACACATCTCTTTCTCAGCCTCTTCATCTCTTTCTCTGCTGCTCTGTTTTTTTTTT
GTGGACAAAATCTGTGTTTTCAAAGAACGAATGAAGTTCTTTGAAACCTATTTTCTCTGCTATTCAACTTCGACGACTCTTAGATGCTAAAAAAGTATTATTTAAGATGC
CAGCTACATTTCCCATATCATCCATACTTTCATCTTCTCATTCCAATGGAGTTATTAAGATTTGCTGCTTGAAATCCAAAGGGAATGCTTCTTTCAATCCACATTTCTGC
TTTGTTGATTGTAAAGTTCCATGGACATTGAAGAAAGATGTTAAGCCAAGGTTGGGACGTGACCCATATTTTGTGCTGAAATCTACTTCCCTGAATTGTGTGAAACCTAC
TTATCAGTCATTTTTTGAAGACAAGACAATAATTACTGATTGGGATGGTCAAGAAGGGGACATTGAAGAGATGGGTTCACCTTGGGAAGGAGCAGTTGTTTACAGGAGGA
ACACTTCAGTTTCTCATGTGGAGTATTGCACTACATTAGAGAGGCTTGGATTGGAAAAGCTTTCGACTGATGTCTCGAAATCTAGAGCGTCGAAGATGGGACTTCGCATA
ACGAAGACTGTGAAGGATTATCCCTCTGGAACCCCGGTTCAAATCTCTGTTGACGTTACAAGGAAAGAAAAAAAGTTGAGGCTTGATGGGATTGTCAAAACTGTCATCAC
TCTCAATTGTTATAGGTGTTGTGAACCAGCTCCTGAATGCATTTTCTCAAATTTCTCAATTATACTAAGCGAAGAACCGATTGAAGAACCCGAGGTCATAAATATGGGAA
TCATCAGCGGGCAGGATATATTCAAAACATATGATGGGAATAGTGATGAAGATGATGAAGAGTTGATTGATTTGGATGATCAACTCTATTTTCCTCTTGTGGAGAAAGAA
ATAGATATATCAAAGAACATAAGAGACATCTTGCATCTAGAAATTACTCTGAATGCGATATGCGATCCGGGATGCCAAGGTATGTGTCTGAAATGTGGTATAAATTTGAA
TACTGGAAGCTGTAACTGTAGTAAGCAGGATGTAAAGAAGAACAATTTTGGTCCTCTAGGAAACTTGAAAAGGCAAATGCAGAATAATTCTTAATAGTTGAATGCAGAAC
ATGTGTTCTATTTCATCAAACACTTTCTTTCTAACAACTTTCCCTTATCTTTCTCTTAGCTGAGCCCTTCACCAACCATCCTTTTTGTAACTTATTCCCTTTTTGTTTTA
ATCTTTGTCAAGTTAGAGCATATGCAATTCTGAAAAAAATGTCTATTATTACTCTGCTCATTTTGGCTGAAGCCCAATCTACAATTTCTAATGGCAG

Protein sequence

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MPATFPISSILSSSHSNGVIKICCLKSKGNASFNPHFCFVDCKVPWTLKKDVKPRLGRDPYFVLKSTSLNCVKPTYQSFFEDKTIITDWDGQEGDIEEMGSPWEGAVVYR
RNTSVSHVEYCTTLERLGLEKLSTDVSKSRASKMGLRITKTVKDYPSGTPVQISVDVTRKEKKLRLDGIVKTVITLNCYRCCEPAPECIFSNFSIILSEEPIEEPEVINM
GIISGQDIFKTYDGNSDEDDEELIDLDDQLYFPLVEKEIDISKNIRDILHLEITLNAICDPGCQGMCLKCGINLNTGSCNCSKQDVKKNNFGPLGNLKRQMQNNS

Sed0013319 (gene) of Chayote v1 genome