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Sed0013335 (gene) of Chayote v1 genome

Gene IDSed0013335
OrganismSechium edule (Chayote v1)
DescriptionProtein Ycf2-like
Genome locationLG03:21736669..21737533
RNA-Seq ExpressionSed0013335
SyntenySed0013335
Gene Ontology termsNA
InterPro domainsIPR015410 - Domain of unknown function DUF1985


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0047596.1 protein Ycf2-like [Cucumis melo var. makuwa]4.1e-3438.14Show/hide
Query:  LPFGIGEFCLITGLNCGPLVKIDKASIKGDGQLKKVYFEGDDVVKRTMLNMAFRVNKSSPEEDMIKMFLLYYLESFVLAKQDKVNIEDKHILVVDDLDMF
        L FG+ EF LITGL C  +  I+   I G G+LK VYFE    V R  LN+ F ++ +  ++D IKM  LY+LESF++ KQ+  +++  HI++VDD ++F
Subjt:  LPFGIGEFCLITGLNCGPLVKIDKASIKGDGQLKKVYFEGDDVVKRTMLNMAFRVNKSSPEEDMIKMFLLYYLESFVLAKQDKVNIEDKHILVVDDLDMF

Query:  NTYLWG------------------------MGDMVYALLTWAYEVIPALSFAPIFYAKRIGDLLPRMLSWDFETQPQRRELLTDIFECPT--VHPVIASE
        + Y WG                        MG  ++ +L WAYEVIP LS  P F+  RI + +PR+++   +TQP+ ++L   +F+ PT  V P++A+ 
Subjt:  NTYLWG------------------------MGDMVYALLTWAYEVIPALSFAPIFYAKRIGDLLPRMLSWDFETQPQRRELLTDIFECPT--VHPVIASE

Query:  KEMGMPYFALLVSEE
         E+GMP+FA  +  E
Subjt:  KEMGMPYFALLVSEE

KAA0051382.1 protein Ycf2-like [Cucumis melo var. makuwa]5.9e-3337.67Show/hide
Query:  LPFGIGEFCLITGLNCGPLVKIDKASIKGDGQLKKVYFEGDDVVKRTMLNMAFRVNKSSPEEDMIKMFLLYYLESFVLAKQDKVNIEDKHILVVDDLDMF
        L FG+ EF LITGL C  +  I+   IKG G+LK VYFE    V R  LN+ F ++ +  ++D IKM  LY+LESF++ KQ+ ++++  HI++VDD ++F
Subjt:  LPFGIGEFCLITGLNCGPLVKIDKASIKGDGQLKKVYFEGDDVVKRTMLNMAFRVNKSSPEEDMIKMFLLYYLESFVLAKQDKVNIEDKHILVVDDLDMF

Query:  NTYLWG------------------------MGDMVYALLTWAYEVIPALSFAPIFYAKRIGDLLPRMLSWDFETQPQRRELLTDIFECPT--VHPVIASE
        + Y WG                        +   ++ +L WAYEV P LS    F+A RI + +PR+++W  +TQP+ ++L   +F+ PT  V P++A+ 
Subjt:  NTYLWG------------------------MGDMVYALLTWAYEVIPALSFAPIFYAKRIGDLLPRMLSWDFETQPQRRELLTDIFECPT--VHPVIASE

Query:  KEMGMPYFALLVSEE
         E+GMP+FA  +  E
Subjt:  KEMGMPYFALLVSEE

TYK09852.1 protein Ycf2-like [Cucumis melo var. makuwa]9.7e-3639.52Show/hide
Query:  LPFGIGEFCLITGLNCGPLVKIDKASIKGDGQLKKVYFEGDDVVKRTMLNMAFRVNKSSPEEDMIKMFLLYYLESFVLAKQDKVNIEDKHILVVDDLDMF
        L FG+ EF LITGL C  +  I+   IKG G+LK VYFE    V R  LN+ F ++ +  ++D IKM  LY+LESF++ KQ+ ++++  HI++VDD ++F
Subjt:  LPFGIGEFCLITGLNCGPLVKIDKASIKGDGQLKKVYFEGDDVVKRTMLNMAFRVNKSSPEEDMIKMFLLYYLESFVLAKQDKVNIEDKHILVVDDLDMF

Query:  NTYLWGM-------------------------GDMVYALLTWAYEVIPALSFAPIFYAKRIGDLLPRMLSWDFETQPQRRELLTDIFECPT--VHPVIAS
        + Y WG                          G  ++ +L WAYEVIP LS  P F+A RI + +PR+++W  +TQP+ ++L   +F+ PT  V P++A+
Subjt:  NTYLWGM-------------------------GDMVYALLTWAYEVIPALSFAPIFYAKRIGDLLPRMLSWDFETQPQRRELLTDIFECPT--VHPVIAS

Query:  EKEMGMPYFA
          E+GMP+FA
Subjt:  EKEMGMPYFA

TYK23840.1 protein Ycf2-like [Cucumis melo var. makuwa]5.9e-3337.67Show/hide
Query:  LPFGIGEFCLITGLNCGPLVKIDKASIKGDGQLKKVYFEGDDVVKRTMLNMAFRVNKSSPEEDMIKMFLLYYLESFVLAKQDKVNIEDKHILVVDDLDMF
        L FG+ EF LITGL C  +  I+   IKG G+LK VYFE    V R  LN+ F ++ +  ++D IKM  LY+LESF++ KQ+ ++++  HI++VDD ++F
Subjt:  LPFGIGEFCLITGLNCGPLVKIDKASIKGDGQLKKVYFEGDDVVKRTMLNMAFRVNKSSPEEDMIKMFLLYYLESFVLAKQDKVNIEDKHILVVDDLDMF

Query:  NTYLWG------------------------MGDMVYALLTWAYEVIPALSFAPIFYAKRIGDLLPRMLSWDFETQPQRRELLTDIFECPT--VHPVIASE
        + Y WG                        +   ++ +L WAYEV P LS    F+A RI + +PR+++W  +TQP+ ++L   +F+ PT  V P++A+ 
Subjt:  NTYLWG------------------------MGDMVYALLTWAYEVIPALSFAPIFYAKRIGDLLPRMLSWDFETQPQRRELLTDIFECPT--VHPVIASE

Query:  KEMGMPYFALLVSEE
         E+GMP+FA  +  E
Subjt:  KEMGMPYFALLVSEE

TYK30414.1 protein Ycf2-like [Cucumis melo var. makuwa]8.5e-3241.88Show/hide
Query:  LPFGIGEFCLITGLNCGPLVKIDKASIKGDGQLKKVYFEGDDVVKRTMLNMAFRVNKSSPEEDMIKMFLLYYLESFVLAKQDKVNIEDKHILVVDDLDMF
        L FG+ EF LITGL C  +  I+   IKG G+LK VYF+    + R  LN+ F V+ +  ++D IKM  LY+LESF++ KQ+ +++E  HI +      F
Subjt:  LPFGIGEFCLITGLNCGPLVKIDKASIKGDGQLKKVYFEGDDVVKRTMLNMAFRVNKSSPEEDMIKMFLLYYLESFVLAKQDKVNIEDKHILVVDDLDMF

Query:  NTYLWGMGDMVYALLTWAYEVIPALSFAPIFYAKRIGDLLPRMLSWDFETQPQRRELLTDIFECPT--VHPVIASEKEMGMPYFALLVSEE
        +      G   + +LTWAYEVIP LS  P F A RI + +PR+++W  +TQP+ ++L   +F+ PT  V P++A+  E+GMPYFA  +  E
Subjt:  NTYLWGMGDMVYALLTWAYEVIPALSFAPIFYAKRIGDLLPRMLSWDFETQPQRRELLTDIFECPT--VHPVIASEKEMGMPYFALLVSEE

TrEMBL top hitse value%identityAlignment
A0A5A7U047 Protein Ycf2-like2.0e-3438.14Show/hide
Query:  LPFGIGEFCLITGLNCGPLVKIDKASIKGDGQLKKVYFEGDDVVKRTMLNMAFRVNKSSPEEDMIKMFLLYYLESFVLAKQDKVNIEDKHILVVDDLDMF
        L FG+ EF LITGL C  +  I+   I G G+LK VYFE    V R  LN+ F ++ +  ++D IKM  LY+LESF++ KQ+  +++  HI++VDD ++F
Subjt:  LPFGIGEFCLITGLNCGPLVKIDKASIKGDGQLKKVYFEGDDVVKRTMLNMAFRVNKSSPEEDMIKMFLLYYLESFVLAKQDKVNIEDKHILVVDDLDMF

Query:  NTYLWG------------------------MGDMVYALLTWAYEVIPALSFAPIFYAKRIGDLLPRMLSWDFETQPQRRELLTDIFECPT--VHPVIASE
        + Y WG                        MG  ++ +L WAYEVIP LS  P F+  RI + +PR+++   +TQP+ ++L   +F+ PT  V P++A+ 
Subjt:  NTYLWG------------------------MGDMVYALLTWAYEVIPALSFAPIFYAKRIGDLLPRMLSWDFETQPQRRELLTDIFECPT--VHPVIASE

Query:  KEMGMPYFALLVSEE
         E+GMP+FA  +  E
Subjt:  KEMGMPYFALLVSEE

A0A5A7U6E1 Protein Ycf2-like2.8e-3337.67Show/hide
Query:  LPFGIGEFCLITGLNCGPLVKIDKASIKGDGQLKKVYFEGDDVVKRTMLNMAFRVNKSSPEEDMIKMFLLYYLESFVLAKQDKVNIEDKHILVVDDLDMF
        L FG+ EF LITGL C  +  I+   IKG G+LK VYFE    V R  LN+ F ++ +  ++D IKM  LY+LESF++ KQ+ ++++  HI++VDD ++F
Subjt:  LPFGIGEFCLITGLNCGPLVKIDKASIKGDGQLKKVYFEGDDVVKRTMLNMAFRVNKSSPEEDMIKMFLLYYLESFVLAKQDKVNIEDKHILVVDDLDMF

Query:  NTYLWG------------------------MGDMVYALLTWAYEVIPALSFAPIFYAKRIGDLLPRMLSWDFETQPQRRELLTDIFECPT--VHPVIASE
        + Y WG                        +   ++ +L WAYEV P LS    F+A RI + +PR+++W  +TQP+ ++L   +F+ PT  V P++A+ 
Subjt:  NTYLWG------------------------MGDMVYALLTWAYEVIPALSFAPIFYAKRIGDLLPRMLSWDFETQPQRRELLTDIFECPT--VHPVIASE

Query:  KEMGMPYFALLVSEE
         E+GMP+FA  +  E
Subjt:  KEMGMPYFALLVSEE

A0A5D3CEX9 Protein Ycf2-like4.7e-3639.52Show/hide
Query:  LPFGIGEFCLITGLNCGPLVKIDKASIKGDGQLKKVYFEGDDVVKRTMLNMAFRVNKSSPEEDMIKMFLLYYLESFVLAKQDKVNIEDKHILVVDDLDMF
        L FG+ EF LITGL C  +  I+   IKG G+LK VYFE    V R  LN+ F ++ +  ++D IKM  LY+LESF++ KQ+ ++++  HI++VDD ++F
Subjt:  LPFGIGEFCLITGLNCGPLVKIDKASIKGDGQLKKVYFEGDDVVKRTMLNMAFRVNKSSPEEDMIKMFLLYYLESFVLAKQDKVNIEDKHILVVDDLDMF

Query:  NTYLWGM-------------------------GDMVYALLTWAYEVIPALSFAPIFYAKRIGDLLPRMLSWDFETQPQRRELLTDIFECPT--VHPVIAS
        + Y WG                          G  ++ +L WAYEVIP LS  P F+A RI + +PR+++W  +TQP+ ++L   +F+ PT  V P++A+
Subjt:  NTYLWGM-------------------------GDMVYALLTWAYEVIPALSFAPIFYAKRIGDLLPRMLSWDFETQPQRRELLTDIFECPT--VHPVIAS

Query:  EKEMGMPYFA
          E+GMP+FA
Subjt:  EKEMGMPYFA

A0A5D3DKA6 Protein Ycf2-like2.8e-3337.67Show/hide
Query:  LPFGIGEFCLITGLNCGPLVKIDKASIKGDGQLKKVYFEGDDVVKRTMLNMAFRVNKSSPEEDMIKMFLLYYLESFVLAKQDKVNIEDKHILVVDDLDMF
        L FG+ EF LITGL C  +  I+   IKG G+LK VYFE    V R  LN+ F ++ +  ++D IKM  LY+LESF++ KQ+ ++++  HI++VDD ++F
Subjt:  LPFGIGEFCLITGLNCGPLVKIDKASIKGDGQLKKVYFEGDDVVKRTMLNMAFRVNKSSPEEDMIKMFLLYYLESFVLAKQDKVNIEDKHILVVDDLDMF

Query:  NTYLWG------------------------MGDMVYALLTWAYEVIPALSFAPIFYAKRIGDLLPRMLSWDFETQPQRRELLTDIFECPT--VHPVIASE
        + Y WG                        +   ++ +L WAYEV P LS    F+A RI + +PR+++W  +TQP+ ++L   +F+ PT  V P++A+ 
Subjt:  NTYLWG------------------------MGDMVYALLTWAYEVIPALSFAPIFYAKRIGDLLPRMLSWDFETQPQRRELLTDIFECPT--VHPVIASE

Query:  KEMGMPYFALLVSEE
         E+GMP+FA  +  E
Subjt:  KEMGMPYFALLVSEE

A0A5D3E3E8 Protein Ycf2-like4.1e-3241.88Show/hide
Query:  LPFGIGEFCLITGLNCGPLVKIDKASIKGDGQLKKVYFEGDDVVKRTMLNMAFRVNKSSPEEDMIKMFLLYYLESFVLAKQDKVNIEDKHILVVDDLDMF
        L FG+ EF LITGL C  +  I+   IKG G+LK VYF+    + R  LN+ F V+ +  ++D IKM  LY+LESF++ KQ+ +++E  HI +      F
Subjt:  LPFGIGEFCLITGLNCGPLVKIDKASIKGDGQLKKVYFEGDDVVKRTMLNMAFRVNKSSPEEDMIKMFLLYYLESFVLAKQDKVNIEDKHILVVDDLDMF

Query:  NTYLWGMGDMVYALLTWAYEVIPALSFAPIFYAKRIGDLLPRMLSWDFETQPQRRELLTDIFECPT--VHPVIASEKEMGMPYFALLVSEE
        +      G   + +LTWAYEVIP LS  P F A RI + +PR+++W  +TQP+ ++L   +F+ PT  V P++A+  E+GMPYFA  +  E
Subjt:  NTYLWGMGDMVYALLTWAYEVIPALSFAPIFYAKRIGDLLPRMLSWDFETQPQRRELLTDIFECPT--VHPVIASEKEMGMPYFALLVSEE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTATTTACCGTTCGGCATAGGGGAGTTTTGCCTTATTACGGGCCTAAACTGTGGACCATTGGTCAAGATTGATAAGGCCTCAATTAAGGGAGATGGACAACTTAAAAA
GGTTTATTTTGAAGGTGATGATGTCGTGAAGCGGACAATGCTAAATATGGCCTTTAGGGTTAATAAGAGTTCCCCCGAGGAGGATATGATAAAGATGTTCTTATTGTACT
ACTTGGAGAGCTTTGTACTAGCTAAGCAAGACAAAGTCAACATTGAGGATAAACACATACTCGTGGTGGATGATCTAGACATGTTTAACACATACCTGTGGGGGATGGGT
GACATGGTTTATGCCCTCTTGACATGGGCGTACGAAGTAATACCAGCTCTGAGTTTTGCCCCGATATTCTATGCAAAGAGAATAGGTGACCTGCTACCGAGGATGTTGAG
CTGGGACTTTGAAACGCAGCCTCAAAGGAGAGAACTCCTTACTGACATATTCGAATGCCCAACGGTCCATCCAGTTATTGCTAGCGAAAAAGAAATGGGGATGCCTTACT
TTGCTCTGCTTGTTTCAGAGGAGTTGGCTAGTCAAGGTCAAAGTAGTCCGTCGGAGGGTGGCATAGTAGGGGCCCCATGTTATTACCTTGGTCAAACATCTGTATCACTC
TTGGGAAAACATATCGAATTAGGCCCTGCCACAAAACGATATGCCAAAAGAATTTGA
mRNA sequenceShow/hide mRNA sequence
ATGTATTTACCGTTCGGCATAGGGGAGTTTTGCCTTATTACGGGCCTAAACTGTGGACCATTGGTCAAGATTGATAAGGCCTCAATTAAGGGAGATGGACAACTTAAAAA
GGTTTATTTTGAAGGTGATGATGTCGTGAAGCGGACAATGCTAAATATGGCCTTTAGGGTTAATAAGAGTTCCCCCGAGGAGGATATGATAAAGATGTTCTTATTGTACT
ACTTGGAGAGCTTTGTACTAGCTAAGCAAGACAAAGTCAACATTGAGGATAAACACATACTCGTGGTGGATGATCTAGACATGTTTAACACATACCTGTGGGGGATGGGT
GACATGGTTTATGCCCTCTTGACATGGGCGTACGAAGTAATACCAGCTCTGAGTTTTGCCCCGATATTCTATGCAAAGAGAATAGGTGACCTGCTACCGAGGATGTTGAG
CTGGGACTTTGAAACGCAGCCTCAAAGGAGAGAACTCCTTACTGACATATTCGAATGCCCAACGGTCCATCCAGTTATTGCTAGCGAAAAAGAAATGGGGATGCCTTACT
TTGCTCTGCTTGTTTCAGAGGAGTTGGCTAGTCAAGGTCAAAGTAGTCCGTCGGAGGGTGGCATAGTAGGGGCCCCATGTTATTACCTTGGTCAAACATCTGTATCACTC
TTGGGAAAACATATCGAATTAGGCCCTGCCACAAAACGATATGCCAAAAGAATTTGA
Protein sequenceShow/hide protein sequence
MYLPFGIGEFCLITGLNCGPLVKIDKASIKGDGQLKKVYFEGDDVVKRTMLNMAFRVNKSSPEEDMIKMFLLYYLESFVLAKQDKVNIEDKHILVVDDLDMFNTYLWGMG
DMVYALLTWAYEVIPALSFAPIFYAKRIGDLLPRMLSWDFETQPQRRELLTDIFECPTVHPVIASEKEMGMPYFALLVSEELASQGQSSPSEGGIVGAPCYYLGQTSVSL
LGKHIELGPATKRYAKRI