; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Sed0013353 (gene) of Chayote v1 genome

Gene IDSed0013353
OrganismSechium edule (Chayote v1)
DescriptionC3H1-type domain-containing protein
Genome locationLG04:47876930..47877613
RNA-Seq ExpressionSed0013353
SyntenySed0013353
Gene Ontology termsGO:0005689 - U12-type spliceosomal complex (cellular component)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR000571 - Zinc finger, CCCH-type
IPR003604 - Matrin/U1-C-like, C2H2-type zinc finger
IPR013085 - U1-C, C2H2-type zinc finger
IPR036236 - Zinc finger C2H2 superfamily
IPR036855 - Zinc finger, CCCH-type superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004135569.1 zinc finger CCCH domain-containing protein 3 [Cucumis sativus]2.8e-4963.29Show/hide
Query:  MGVGKYYCDYCEKQFQDTPFGRKRHLQSLSHQKAKALWFDSF-----VFVPNHYTPPRLCNRFITTGFCQYGDSCKYFHPNNNNNNNNNNNPPHHPIAAA
        M +GKYYCDYC+KQFQDTPF RKRHLQSLSHQKAKALWFDSF      F  + +  PR+CNRF++TGFCQYGDSCKYFHPNNNN+N  N++   +P+A  
Subjt:  MGVGKYYCDYCEKQFQDTPFGRKRHLQSLSHQKAKALWFDSF-----VFVPNHYTPPRLCNRFITTGFCQYGDSCKYFHPNNNNNNNNNNNPPHHPIAAA

Query:  P----PGTIPI-PILFTLSLSRLTLVSDTMGTSWGNLPPSLIPPPEAGYPSLPFVDWG
        P    P  +P+   +   S S  +L+SD +GTSWGNLPPSL+PPP+ GYP LPFVDWG
Subjt:  P----PGTIPI-PILFTLSLSRLTLVSDTMGTSWGNLPPSLIPPPEAGYPSLPFVDWG

XP_008450521.1 PREDICTED: zinc finger CCCH domain-containing protein 3 [Cucumis melo]5.1e-5165.19Show/hide
Query:  MGVGKYYCDYCEKQFQDTPFGRKRHLQSLSHQKAKALWFDSF-----VFVPNHYTPPRLCNRFITTGFCQYGDSCKYFHPNNNNNNNNNNNPPHHPIAAA
        M +GKYYCDYC+KQFQDTPF RKRHLQSLSHQKAKALWFDSF      F  + +  PR+CNRF++TGFCQYGDSCKYFHP NN+N+N +N+   HPIA  
Subjt:  MGVGKYYCDYCEKQFQDTPFGRKRHLQSLSHQKAKALWFDSF-----VFVPNHYTPPRLCNRFITTGFCQYGDSCKYFHPNNNNNNNNNNNPPHHPIAAA

Query:  PPGTIPIPILFTL-----SLSRLTLVSDTMGTSWGNLPPSLIPPPEAGYPSLPFVDWG
        P    P  + F       S S  +LVSD +GTSWGNLPPSL+PPPE GYP LPFVDWG
Subjt:  PPGTIPIPILFTL-----SLSRLTLVSDTMGTSWGNLPPSLIPPPEAGYPSLPFVDWG

XP_022931617.1 zinc finger CCCH domain-containing protein 3 [Cucurbita moschata]1.1e-4564.05Show/hide
Query:  MGVGKYYCDYCEKQFQDTPFGRKRHLQSLSHQKAKALWFDSFVFVP---NHYTPPRLCNRFITTGFCQYGDSCKYFHPNNNNNNNNNNNPPHHPIAAAPP
        M +GKYYCDYCEKQFQDTPF RKRHLQSLSH KAKALWFDSF       +H  P RLCNRF+TTGFCQYGDSC YFH NNN   +++     HPIA  P 
Subjt:  MGVGKYYCDYCEKQFQDTPFGRKRHLQSLSHQKAKALWFDSFVFVP---NHYTPPRLCNRFITTGFCQYGDSCKYFHPNNNNNNNNNNNPPHHPIAAAPP

Query:  GTIP--IPILFTLSLSRLTLVSDTMGTSWGNLPPSLIPPPEAGYPSLPFVDWG
              IP+   +  S LT   D + TSWGNLPPSL+PPPE GYP LPFVDWG
Subjt:  GTIP--IPILFTLSLSRLTLVSDTMGTSWGNLPPSLIPPPEAGYPSLPFVDWG

XP_023520794.1 zinc finger CCCH domain-containing protein 3 [Cucurbita pepo subsp. pepo]7.9e-4462.09Show/hide
Query:  MGVGKYYCDYCEKQFQDTPFGRKRHLQSLSHQKAKALWFDSFVFVP---NHYTPPRLCNRFITTGFCQYGDSCKYFHPNNNNNNNNNNNPPHHPIAAAPP
        M +GKYYCDYCEKQFQDTPF RKRHLQSLSH KAKALWFDSF       +H  P RL NRF+TTGFC YGDSC YFH NNN   +++     HPIA  P 
Subjt:  MGVGKYYCDYCEKQFQDTPFGRKRHLQSLSHQKAKALWFDSFVFVP---NHYTPPRLCNRFITTGFCQYGDSCKYFHPNNNNNNNNNNNPPHHPIAAAPP

Query:  GTIP--IPILFTLSLSRLTLVSDTMGTSWGNLPPSLIPPPEAGYPSLPFVDWG
              +P+   +  S LT   D + TSWGNLPPSL+PPPE GYP LPFVDWG
Subjt:  GTIP--IPILFTLSLSRLTLVSDTMGTSWGNLPPSLIPPPEAGYPSLPFVDWG

XP_038879279.1 zinc finger CCCH domain-containing protein 3 [Benincasa hispida]4.6e-5269.43Show/hide
Query:  MGVGKYYCDYCEKQFQDTPFGRKRHLQSLSHQKAKALWFDSFVFVPN----HYTPPRLCNRFITTGFCQYGDSCKYFHPNNNNNNNNNNNPPHHPIAAAP
        M +GKYYCDYCEKQFQDTPF RKRHLQSLSHQKAKALWFDSF   PN    H   P  CNRF+TTGFCQYGDSCKYFHPNNN NNNN +N   HPIA  P
Subjt:  MGVGKYYCDYCEKQFQDTPFGRKRHLQSLSHQKAKALWFDSFVFVPN----HYTPPRLCNRFITTGFCQYGDSCKYFHPNNNNNNNNNNNPPHHPIAAAP

Query:  ----PGTIPIPILFTLSLSRLTLVSDTMG-TSWGNLPPSLIPPPEAGYPSLPFVDWG
            P   P+      S    +LVSD+MG TSWGNLPPSL+PPPE GYP LPFVDWG
Subjt:  ----PGTIPIPILFTLSLSRLTLVSDTMG-TSWGNLPPSLIPPPEAGYPSLPFVDWG

TrEMBL top hitse value%identityAlignment
A0A0A0M1B0 C3H1-type domain-containing protein1.3e-4963.29Show/hide
Query:  MGVGKYYCDYCEKQFQDTPFGRKRHLQSLSHQKAKALWFDSF-----VFVPNHYTPPRLCNRFITTGFCQYGDSCKYFHPNNNNNNNNNNNPPHHPIAAA
        M +GKYYCDYC+KQFQDTPF RKRHLQSLSHQKAKALWFDSF      F  + +  PR+CNRF++TGFCQYGDSCKYFHPNNNN+N  N++   +P+A  
Subjt:  MGVGKYYCDYCEKQFQDTPFGRKRHLQSLSHQKAKALWFDSF-----VFVPNHYTPPRLCNRFITTGFCQYGDSCKYFHPNNNNNNNNNNNPPHHPIAAA

Query:  P----PGTIPI-PILFTLSLSRLTLVSDTMGTSWGNLPPSLIPPPEAGYPSLPFVDWG
        P    P  +P+   +   S S  +L+SD +GTSWGNLPPSL+PPP+ GYP LPFVDWG
Subjt:  P----PGTIPI-PILFTLSLSRLTLVSDTMGTSWGNLPPSLIPPPEAGYPSLPFVDWG

A0A1S3BQ25 zinc finger CCCH domain-containing protein 32.5e-5165.19Show/hide
Query:  MGVGKYYCDYCEKQFQDTPFGRKRHLQSLSHQKAKALWFDSF-----VFVPNHYTPPRLCNRFITTGFCQYGDSCKYFHPNNNNNNNNNNNPPHHPIAAA
        M +GKYYCDYC+KQFQDTPF RKRHLQSLSHQKAKALWFDSF      F  + +  PR+CNRF++TGFCQYGDSCKYFHP NN+N+N +N+   HPIA  
Subjt:  MGVGKYYCDYCEKQFQDTPFGRKRHLQSLSHQKAKALWFDSF-----VFVPNHYTPPRLCNRFITTGFCQYGDSCKYFHPNNNNNNNNNNNPPHHPIAAA

Query:  PPGTIPIPILFTL-----SLSRLTLVSDTMGTSWGNLPPSLIPPPEAGYPSLPFVDWG
        P    P  + F       S S  +LVSD +GTSWGNLPPSL+PPPE GYP LPFVDWG
Subjt:  PPGTIPIPILFTL-----SLSRLTLVSDTMGTSWGNLPPSLIPPPEAGYPSLPFVDWG

A0A5D3CFN3 Zinc finger CCCH domain-containing protein 32.5e-5165.19Show/hide
Query:  MGVGKYYCDYCEKQFQDTPFGRKRHLQSLSHQKAKALWFDSF-----VFVPNHYTPPRLCNRFITTGFCQYGDSCKYFHPNNNNNNNNNNNPPHHPIAAA
        M +GKYYCDYC+KQFQDTPF RKRHLQSLSHQKAKALWFDSF      F  + +  PR+CNRF++TGFCQYGDSCKYFHP NN+N+N +N+   HPIA  
Subjt:  MGVGKYYCDYCEKQFQDTPFGRKRHLQSLSHQKAKALWFDSF-----VFVPNHYTPPRLCNRFITTGFCQYGDSCKYFHPNNNNNNNNNNNPPHHPIAAA

Query:  PPGTIPIPILFTL-----SLSRLTLVSDTMGTSWGNLPPSLIPPPEAGYPSLPFVDWG
        P    P  + F       S S  +LVSD +GTSWGNLPPSL+PPPE GYP LPFVDWG
Subjt:  PPGTIPIPILFTL-----SLSRLTLVSDTMGTSWGNLPPSLIPPPEAGYPSLPFVDWG

A0A6J1EU59 zinc finger CCCH domain-containing protein 35.3e-4664.05Show/hide
Query:  MGVGKYYCDYCEKQFQDTPFGRKRHLQSLSHQKAKALWFDSFVFVP---NHYTPPRLCNRFITTGFCQYGDSCKYFHPNNNNNNNNNNNPPHHPIAAAPP
        M +GKYYCDYCEKQFQDTPF RKRHLQSLSH KAKALWFDSF       +H  P RLCNRF+TTGFCQYGDSC YFH NNN   +++     HPIA  P 
Subjt:  MGVGKYYCDYCEKQFQDTPFGRKRHLQSLSHQKAKALWFDSFVFVP---NHYTPPRLCNRFITTGFCQYGDSCKYFHPNNNNNNNNNNNPPHHPIAAAPP

Query:  GTIP--IPILFTLSLSRLTLVSDTMGTSWGNLPPSLIPPPEAGYPSLPFVDWG
              IP+   +  S LT   D + TSWGNLPPSL+PPPE GYP LPFVDWG
Subjt:  GTIP--IPILFTLSLSRLTLVSDTMGTSWGNLPPSLIPPPEAGYPSLPFVDWG

A0A6J1JFY8 zinc finger CCCH domain-containing protein 3 isoform X11.1e-4361.44Show/hide
Query:  MGVGKYYCDYCEKQFQDTPFGRKRHLQSLSHQKAKALWFDSFVFVPNHYTP---PRLCNRFITTGFCQYGDSCKYFHPNNNNNNNNNNNPPHHPIAAAPP
        M +GKYYCDYCEKQFQDTPF RKRHLQSLSHQKAKALWFDSF      ++     R+CNRF+TTGFCQYGDSCKYFH  NN   +++      PIA  P 
Subjt:  MGVGKYYCDYCEKQFQDTPFGRKRHLQSLSHQKAKALWFDSFVFVPNHYTP---PRLCNRFITTGFCQYGDSCKYFHPNNNNNNNNNNNPPHHPIAAAPP

Query:  GTIP--IPILFTLSLSRLTLVSDTMGTSWGNLPPSLIPPPEAGYPSLPFVDWG
              +P+   +  S LT   D + TSWGNLPPSL+PPPE GYP LPFVDWG
Subjt:  GTIP--IPILFTLSLSRLTLVSDTMGTSWGNLPPSLIPPPEAGYPSLPFVDWG

SwissProt top hitse value%identityAlignment
Q0JP11 Zinc finger CCCH domain-containing protein 31.6e-3142.94Show/hide
Query:  MGVGKYYCDYCEKQFQDTPFGRKRHLQSLSHQKAKALWFDSFVFVPNH----YTPPRL----------CNRFITTGFCQYGDSCKYFHPNNNNNNNNNNN
        M +GKYYCDYCEKQFQDTP  RKRHL    H +A+ALW+D+      H      PP L          C  F+ TG C++GDSC+YFHP           
Subjt:  MGVGKYYCDYCEKQFQDTPFGRKRHLQSLSHQKAKALWFDSFVFVPNH----YTPPRL----------CNRFITTGFCQYGDSCKYFHPNNNNNNNNNNN

Query:  PPHHPIAAAPPGTIPIPILFTLSL-------------SRLTLVSDTMG--TSWGNLPPSLIPPPEAGYPSLPFVDWG
        PP +P   AP G +  P+    ++                +   + +G  TSWGNLPPSL PPPE GYP  PFVDWG
Subjt:  PPHHPIAAAPPGTIPIPILFTLSL-------------SRLTLVSDTMG--TSWGNLPPSLIPPPEAGYPSLPFVDWG

Q2TA39 Zinc finger matrin-type protein 59.7e-1328.74Show/hide
Query:  KYYCDYCEKQFQDTPFGRKRHLQSLSHQKAKALWFDSF---VFVPNHYTPPRLCNRFITTGFCQYGDSCKYFHPNNNN------NNNNNNNPPHHPIAAA
        +Y+CDYC++ FQD    RK+HL  L H KAK LW+D F     +       R C +F+ TG C +G +C++ H +  +                 P+  A
Subjt:  KYYCDYCEKQFQDTPFGRKRHLQSLSHQKAKALWFDSF---VFVPNHYTPPRLCNRFITTGFCQYGDSCKYFHPNNNN------NNNNNNNPPHHPIAAA

Query:  PPGTIPIPILFTLSLSRLTLVSDTMG-----------TSW---GNLPPSLIPPPEAGYPSLPFVDWG
            + +         RL+    +               W     LPPSL  PP  G+P  P V WG
Subjt:  PPGTIPIPILFTLSLSRLTLVSDTMG-----------TSW---GNLPPSLIPPPEAGYPSLPFVDWG

Q6AXL8 Zinc finger matrin-type protein 58.2e-1228.82Show/hide
Query:  KYYCDYCEKQFQDTPFGRKRHLQSLSHQKAKALWFDSF---VFVPNHYTPPRLCNRFITTGFCQYGDSCKYFHPNNNNNNNNNNNPPHHPIAAAPP---G
        +YYCDYC++ FQD    RK+HL  + H +AK  WFD+F     + N      +C +F+ TG C +G SC++ H +                    P   G
Subjt:  KYYCDYCEKQFQDTPFGRKRHLQSLSHQKAKALWFDSF---VFVPNHYTPPRLCNRFITTGFCQYGDSCKYFHPNNNNNNNNNNNPPHHPIAAAPP---G

Query:  TIPIPILFTLSLSRLTLVSDTMG--------------------TSWGNLPPSLIPPPEAGYPSLPFVDWG
        +    +   LS     L + T G                     S  +LPPSL PPP  G+      +WG
Subjt:  TIPIPILFTLSLSRLTLVSDTMG--------------------TSWGNLPPSLIPPPEAGYPSLPFVDWG

Q9CQR5 Zinc finger matrin-type protein 52.4e-1129.94Show/hide
Query:  KYYCDYCEKQFQDTPFGRKRHLQSLSHQKAKALWFDSF---VFVPNHYTPPRLCNRFITTGFCQYGDSCKYFHPNNNN------NNNNNNNPPHHPIAAA
        +Y+CDYC++ FQD    RK+HL  L H KAK +W+D F     +       R C +F+ TG C +G +C++ H +  +                 P+  A
Subjt:  KYYCDYCEKQFQDTPFGRKRHLQSLSHQKAKALWFDSF---VFVPNHYTPPRLCNRFITTGFCQYGDSCKYFHPNNNN------NNNNNNNPPHHPIAAA

Query:  --PPGTIP------IPILFTLSLSRLTLVSDTM---GTSW---GNLPPSLIPPPEAGYPSLPFVDWG
          P G +          L +   SR   +  T+      W     LPPSL  PP  G+  L  V WG
Subjt:  --PPGTIP------IPILFTLSLSRLTLVSDTM---GTSW---GNLPPSLIPPPEAGYPSLPFVDWG

Q9UDW3 Zinc finger matrin-type protein 51.1e-1129.94Show/hide
Query:  KYYCDYCEKQFQDTPFGRKRHLQSLSHQKAKALWFDSF---VFVPNHYTPPRLCNRFITTGFCQYGDSCKYFHPNNNNNNNNNNNPPHHPIA--------
        +Y+CDYC++ FQD    RK+HL  L H KAK +W+D F     +       R C +F+ TG C +G +C++ H +  +    +        A        
Subjt:  KYYCDYCEKQFQDTPFGRKRHLQSLSHQKAKALWFDSF---VFVPNHYTPPRLCNRFITTGFCQYGDSCKYFHPNNNNNNNNNNNPPHHPIA--------

Query:  AAPPGTIP------IPILFTLSLSRLTLVSDTM---GTSW---GNLPPSLIPPPEAGYPSLPFVDWG
          P G +          L +   SR   +  T+      W     LPPSL  PP  G+P  P V WG
Subjt:  AAPPGTIP------IPILFTLSLSRLTLVSDTM---GTSW---GNLPPSLIPPPEAGYPSLPFVDWG

Arabidopsis top hitse value%identityAlignment
AT5G26749.1 C2H2 and C2HC zinc fingers superfamily protein5.4e-3549.04Show/hide
Query:  MGVGKYYCDYCEKQFQDTPFGRKRHLQSLSHQKAKALWFDSF---VFVP--NHYTPPRLCNRFITTGFCQYGDSCKYFHPNNNNNNNNNNNPPHHPIAAA
        M  GKYYCDYCEK+FQDT   RKRHLQS  H +AKALW+ S    +  P  +++    LCNRFIT+ FC +GDSC+YFHPNNN  +    N         
Subjt:  MGVGKYYCDYCEKQFQDTPFGRKRHLQSLSHQKAKALWFDSF---VFVP--NHYTPPRLCNRFITTGFCQYGDSCKYFHPNNNNNNNNNNNPPHHPIAAA

Query:  PPGTIPIPILFTLSLSRLTL----VSDTMGTSWGNLPPSLIPPPEAGYPSLPFVDWG
            + + +L    +   TL    VS   GT W +LPPSL PPPE GYP LPF+DWG
Subjt:  PPGTIPIPILFTLSLSRLTL----VSDTMGTSWGNLPPSLIPPPEAGYPSLPFVDWG

AT5G26749.2 C2H2 and C2HC zinc fingers superfamily protein1.6e-3143.75Show/hide
Query:  MGVGKYYCDYCEKQFQDTPFGRKRHLQSLSHQKAKALWFDSF---VFVP--NHYTPPRLCNRFITT-------------------GFCQYGDSCKYFHPN
        M  GKYYCDYCEK+FQDT   RKRHLQS  H +AKALW+ S    +  P  +++    LCNRFIT+                    FC +GDSC+YFHPN
Subjt:  MGVGKYYCDYCEKQFQDTPFGRKRHLQSLSHQKAKALWFDSF---VFVP--NHYTPPRLCNRFITT-------------------GFCQYGDSCKYFHPN

Query:  NNNNNNNNNNPPHHPIAAAPPGTIPIPILFTLSLSRLTL----VSDTMGTSWGNLPPSLIPPPEAGYPSLPFVDWG
        NN  +    N             + + +L    +   TL    VS   GT W +LPPSL PPPE GYP LPF+DWG
Subjt:  NNNNNNNNNNPPHHPIAAAPPGTIPIPILFTLSLSRLTL----VSDTMGTSWGNLPPSLIPPPEAGYPSLPFVDWG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGAGTTGGGAAATATTACTGCGACTACTGCGAGAAGCAATTCCAAGACACTCCATTTGGTCGGAAGCGGCATCTTCAAAGTTTGAGTCATCAAAAGGCTAAAGCTCT
GTGGTTCGACTCCTTCGTCTTCGTCCCCAATCACTACACACCACCACGCCTCTGCAATCGATTCATCACCACGGGCTTTTGCCAATACGGTGATTCTTGCAAATATTTTC
ACCCTAATAATAACAACAACAACAACAACAATAACAATCCGCCCCACCACCCGATTGCAGCAGCCCCACCAGGTACAATTCCAATTCCAATTCTATTTACTCTTTCTCTG
TCTCGCCTTACCTTAGTTAGCGATACAATGGGAACATCATGGGGAAATTTACCTCCCTCATTGATCCCTCCTCCAGAAGCTGGATACCCATCTCTCCCTTTTGTAGATTG
GGGATAA
mRNA sequenceShow/hide mRNA sequence
ATGGGAGTTGGGAAATATTACTGCGACTACTGCGAGAAGCAATTCCAAGACACTCCATTTGGTCGGAAGCGGCATCTTCAAAGTTTGAGTCATCAAAAGGCTAAAGCTCT
GTGGTTCGACTCCTTCGTCTTCGTCCCCAATCACTACACACCACCACGCCTCTGCAATCGATTCATCACCACGGGCTTTTGCCAATACGGTGATTCTTGCAAATATTTTC
ACCCTAATAATAACAACAACAACAACAACAATAACAATCCGCCCCACCACCCGATTGCAGCAGCCCCACCAGGTACAATTCCAATTCCAATTCTATTTACTCTTTCTCTG
TCTCGCCTTACCTTAGTTAGCGATACAATGGGAACATCATGGGGAAATTTACCTCCCTCATTGATCCCTCCTCCAGAAGCTGGATACCCATCTCTCCCTTTTGTAGATTG
GGGATAA
Protein sequenceShow/hide protein sequence
MGVGKYYCDYCEKQFQDTPFGRKRHLQSLSHQKAKALWFDSFVFVPNHYTPPRLCNRFITTGFCQYGDSCKYFHPNNNNNNNNNNNPPHHPIAAAPPGTIPIPILFTLSL
SRLTLVSDTMGTSWGNLPPSLIPPPEAGYPSLPFVDWG