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Sed0013373 (gene) of Chayote v1 genome

Gene IDSed0013373
OrganismSechium edule (Chayote v1)
DescriptionRNase H domain-containing protein
Genome locationLG03:20304056..20305242
RNA-Seq ExpressionSed0013373
SyntenySed0013373
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF4369322.1 hypothetical protein F8388_019547 [Cannabis sativa]2.3e-1831.5Show/hide
Query:  LWSLWFDRNKALNKEEVPNAEIIAEWVLNYLQDFHSVNPCSVVKGLKYGPAGFRVHEHWKPPAKGALKLNVDVSCHPSQNRVGLYVIVQDSAGACIAAKS
        LW +W  RN+ L+ +   NA  + +W  +YL+ +   N       LK      + +  W+PP  G +KLNVDV+    QN++    IV++ A   IAA +
Subjt:  LWSLWFDRNKALNKEEVPNAEIIAEWVLNYLQDFHSVNPCSVVKGLKYGPAGFRVHEHWKPPAKGALKLNVDVSCHPSQNRVGLYVIVQDSAGACIAAKS

Query:  KDVDVALDPYVVESLSLILGLHFVLERGVNKVWVESDAKGVVEAVNKGHTSNSALGALFCEAKSLLHNNVFLGCSYVPKEANVAAHSLAHWACNNGLSMD
                P ++E+ +L   L + L+  +    +ES  K ++ A++ G+T N  L       K LL +      SY+P+EAN AAH LA  A   GL  D
Subjt:  KDVDVALDPYVVESLSLILGLHFVLERGVNKVWVESDAKGVVEAVNKGHTSNSALGALFCEAKSLLHNNVFLGCSYVPKEANVAAHSLAHWACNNGLSMD

TXG50387.1 hypothetical protein EZV62_022911 [Acer yangbiense]6.0e-1927.31Show/hide
Query:  MILKIFSAGLWSLWFDRNKALNKEEVPNAEIIAEWVLNYLQDFHSVNPCSVVKGLKYGPAGFRVHEHWKPPAKGALKLNVDVSCHPSQNRVGLYVIVQDS
        ++  +   G W LW +RN  ++      A  +  W+ N+  +F   N  +  + L + P+       WK P +G  K+N D S      + G+ VI++D 
Subjt:  MILKIFSAGLWSLWFDRNKALNKEEVPNAEIIAEWVLNYLQDFHSVNPCSVVKGLKYGPAGFRVHEHWKPPAKGALKLNVDVSCHPSQNRVGLYVIVQDS

Query:  AGACIAAKSKDVDVALDPYVVESLSLILGLHFVLERGVNKVWVESDAKGVVEAVNKGHTSNSALGALFCEAKSLLHNNVFLGCSYVPKEANVAAHSLAHW
         G+ IAA+S  V       ++E+ + + G+H  ++ GV+ V +ESDA  V++ ++      + LGA+   + +L  +   L    V +EAN  AH +A  
Subjt:  AGACIAAKSKDVDVALDPYVVESLSLILGLHFVLERGVNKVWVESDAKGVVEAVNKGHTSNSALGALFCEAKSLLHNNVFLGCSYVPKEANVAAHSLAHW

Query:  ACNNGLSMDWFSDFPP
        A +    + WF + PP
Subjt:  ACNNGLSMDWFSDFPP

XP_023907621.1 uncharacterized protein LOC112019316 [Quercus suber]3.0e-1828.17Show/hide
Query:  LWSLWFDRNK-ALNKEEVPNAEIIAEWVLNYLQDFHSVNPCSVVKGLKYGPAGFRVHEHWKPPAKGALKLNVDVSCHPSQNRVGLYVIVQDSAGACIAAK
        +W++W+ RN+  +   + P  +++ +     L  F   + CS++          RV   W+PP    +KLN D +  P   + GL V+V D  G  IA+ 
Subjt:  LWSLWFDRNK-ALNKEEVPNAEIIAEWVLNYLQDFHSVNPCSVVKGLKYGPAGFRVHEHWKPPAKGALKLNVDVSCHPSQNRVGLYVIVQDSAGACIAAK

Query:  SKDVDVALDPYVVESLSLILGLHFVLERGVNKVWVESDAKGVVEAVNKGHTSNSALGALFCEAKSLLHNNVFLGCSYVPKEANVAAHSLAHWACN-NGLS
        S+   +   P +VE+++    + F  E G+ +  +E D+  V+  +     S ++ G L   A S L  + F+ C+++ ++ N  AH+LA  A +  GLS
Subjt:  SKDVDVALDPYVVESLSLILGLHFVLERGVNKVWVESDAKGVVEAVNKGHTSNSALGALFCEAKSLLHNNVFLGCSYVPKEANVAAHSLAHWACN-NGLS

Query:  MDWFSDFPPCLEN
        M W  D PP L +
Subjt:  MDWFSDFPPCLEN

XP_024178556.2 uncharacterized protein LOC112184522 [Rosa chinensis]2.3e-1832.04Show/hide
Query:  LWSLWFDRNKALNKEEVPNAEIIAEWVLNYLQDFHSVNPCSVVKGLKYGPAGFRVHEHWKPPAKGALKLNVDVSCHPSQNRVGLYVIVQDSAGACIAAKS
        LW++W +RN  L ++       I    + + +++  VN  +V    + GP G      W PPA G LKLNVD +   S    G   ++++  G  IAA S
Subjt:  LWSLWFDRNKALNKEEVPNAEIIAEWVLNYLQDFHSVNPCSVVKGLKYGPAGFRVHEHWKPPAKGALKLNVDVSCHPSQNRVGLYVIVQDSAGACIAAKS

Query:  KDVDVALDPYVVESLSLILGLHFVLERGVNKVWVESDAKGVVEAVNKGHTSNSALGALFCEAKSLLHNNVFLGCSYVPKEANVAAHSLAHWACNNGLSMD
           +  L P   E L+L  GL F+    V KV VE+D    V+A+N      S LGAL  + K L+     +   + P++AN  AH LA ++ ++ + +D
Subjt:  KDVDVALDPYVVESLSLILGLHFVLERGVNKVWVESDAKGVVEAVNKGHTSNSALGALFCEAKSLLHNNVFLGCSYVPKEANVAAHSLAHWACNNGLSMD

Query:  WFSDFP
        WF   P
Subjt:  WFSDFP

XP_035545068.1 uncharacterized protein LOC118348173 [Juglans regia]3.0e-1829.49Show/hide
Query:  FSAGLWSLWFDRNKALNKEEVPNAEIIAEWVLNYLQDFHSVNPCSVVKGLKYGPAGFRVHEHWKPPAKGALKLNVDVSCHPSQNRVGLYVIVQDSAGACI
        F A  W LW+ RNK +N + +     +AE V   L+    V+     + LK+          W PP+ G+LKLNVD +  P  ++ G+  +++D  G  +
Subjt:  FSAGLWSLWFDRNKALNKEEVPNAEIIAEWVLNYLQDFHSVNPCSVVKGLKYGPAGFRVHEHWKPPAKGALKLNVDVSCHPSQNRVGLYVIVQDSAGACI

Query:  AAKSKDVDVALDPYVVESLSLILGLHFVLERGVNKVWVESDAKGVVEAVNKGHTSNSALGALFCEAKSLLHNNVFLGCSYVPKEANVAAHSLAHWACNNG
         A S+   +      +E L++  G+   +  GV+ + VESD+   ++A+N    +NS LG ++ E K L    V    S+V +E N  AH LA  AC   
Subjt:  AAKSKDVDVALDPYVVESLSLILGLHFVLERGVNKVWVESDAKGVVEAVNKGHTSNSALGALFCEAKSLLHNNVFLGCSYVPKEANVAAHSLAHWACNNG

Query:  LSMDWFSDFPPCLENNM
            W++  P C+   +
Subjt:  LSMDWFSDFPPCLENNM

TrEMBL top hitse value%identityAlignment
A0A2Z6NP61 RNase H domain-containing protein5.5e-1828.24Show/hide
Query:  KIFSAGLWSLWFDRNKALNKEEVPNAEIIAEWVLNYLQDFHSVNPCSVVKGLKYGPAGFRVHEHWKPPAKGALKLNVDVSCHPSQNRVGLYVIVQDSAGA
        + FS   WS+W  RN  +        + + +   + +  + +      V+ L   P        W  P  G  KLNVD S     N+VG+ + ++D  G 
Subjt:  KIFSAGLWSLWFDRNKALNKEEVPNAEIIAEWVLNYLQDFHSVNPCSVVKGLKYGPAGFRVHEHWKPPAKGALKLNVDVSCHPSQNRVGLYVIVQDSAGA

Query:  CIAAKSKDVDVALDPYVVESLSLILGLHFVLERGVNKVWVESDAKGVVEAVNKGHTSNSALGALFCEAKSLLHNN-VFLGCSYVPKEANVAAHSLAHWAC
         + AK++ ++  LD  + E++ L+  L ++ E  ++   VE D K VV+ +N     NS  GA+  + +SLL  N V     ++ ++AN  AHSLA W  
Subjt:  CIAAKSKDVDVALDPYVVESLSLILGLHFVLERGVNKVWVESDAKGVVEAVNKGHTSNSALGALFCEAKSLLHNN-VFLGCSYVPKEANVAAHSLAHWAC

Query:  NNGLSMDWFSDFPPCL
         +  S   F D P C+
Subjt:  NNGLSMDWFSDFPPCL

A0A5C7H0P0 Uncharacterized protein2.9e-1927.31Show/hide
Query:  MILKIFSAGLWSLWFDRNKALNKEEVPNAEIIAEWVLNYLQDFHSVNPCSVVKGLKYGPAGFRVHEHWKPPAKGALKLNVDVSCHPSQNRVGLYVIVQDS
        ++  +   G W LW +RN  ++      A  +  W+ N+  +F   N  +  + L + P+       WK P +G  K+N D S      + G+ VI++D 
Subjt:  MILKIFSAGLWSLWFDRNKALNKEEVPNAEIIAEWVLNYLQDFHSVNPCSVVKGLKYGPAGFRVHEHWKPPAKGALKLNVDVSCHPSQNRVGLYVIVQDS

Query:  AGACIAAKSKDVDVALDPYVVESLSLILGLHFVLERGVNKVWVESDAKGVVEAVNKGHTSNSALGALFCEAKSLLHNNVFLGCSYVPKEANVAAHSLAHW
         G+ IAA+S  V       ++E+ + + G+H  ++ GV+ V +ESDA  V++ ++      + LGA+   + +L  +   L    V +EAN  AH +A  
Subjt:  AGACIAAKSKDVDVALDPYVVESLSLILGLHFVLERGVNKVWVESDAKGVVEAVNKGHTSNSALGALFCEAKSLLHNNVFLGCSYVPKEANVAAHSLAHW

Query:  ACNNGLSMDWFSDFPP
        A +    + WF + PP
Subjt:  ACNNGLSMDWFSDFPP

A0A6P9EME2 uncharacterized protein LOC1183481731.4e-1829.49Show/hide
Query:  FSAGLWSLWFDRNKALNKEEVPNAEIIAEWVLNYLQDFHSVNPCSVVKGLKYGPAGFRVHEHWKPPAKGALKLNVDVSCHPSQNRVGLYVIVQDSAGACI
        F A  W LW+ RNK +N + +     +AE V   L+    V+     + LK+          W PP+ G+LKLNVD +  P  ++ G+  +++D  G  +
Subjt:  FSAGLWSLWFDRNKALNKEEVPNAEIIAEWVLNYLQDFHSVNPCSVVKGLKYGPAGFRVHEHWKPPAKGALKLNVDVSCHPSQNRVGLYVIVQDSAGACI

Query:  AAKSKDVDVALDPYVVESLSLILGLHFVLERGVNKVWVESDAKGVVEAVNKGHTSNSALGALFCEAKSLLHNNVFLGCSYVPKEANVAAHSLAHWACNNG
         A S+   +      +E L++  G+   +  GV+ + VESD+   ++A+N    +NS LG ++ E K L    V    S+V +E N  AH LA  AC   
Subjt:  AAKSKDVDVALDPYVVESLSLILGLHFVLERGVNKVWVESDAKGVVEAVNKGHTSNSALGALFCEAKSLLHNNVFLGCSYVPKEANVAAHSLAHWACNNG

Query:  LSMDWFSDFPPCLENNM
            W++  P C+   +
Subjt:  LSMDWFSDFPPCLENNM

A0A7J6FF49 RNase H domain-containing protein1.1e-1831.5Show/hide
Query:  LWSLWFDRNKALNKEEVPNAEIIAEWVLNYLQDFHSVNPCSVVKGLKYGPAGFRVHEHWKPPAKGALKLNVDVSCHPSQNRVGLYVIVQDSAGACIAAKS
        LW +W  RN+ L+ +   NA  + +W  +YL+ +   N       LK      + +  W+PP  G +KLNVDV+    QN++    IV++ A   IAA +
Subjt:  LWSLWFDRNKALNKEEVPNAEIIAEWVLNYLQDFHSVNPCSVVKGLKYGPAGFRVHEHWKPPAKGALKLNVDVSCHPSQNRVGLYVIVQDSAGACIAAKS

Query:  KDVDVALDPYVVESLSLILGLHFVLERGVNKVWVESDAKGVVEAVNKGHTSNSALGALFCEAKSLLHNNVFLGCSYVPKEANVAAHSLAHWACNNGLSMD
                P ++E+ +L   L + L+  +    +ES  K ++ A++ G+T N  L       K LL +      SY+P+EAN AAH LA  A   GL  D
Subjt:  KDVDVALDPYVVESLSLILGLHFVLERGVNKVWVESDAKGVVEAVNKGHTSNSALGALFCEAKSLLHNNVFLGCSYVPKEANVAAHSLAHWACNNGLSMD

A0A803P5E3 Uncharacterized protein1.9e-1829.69Show/hide
Query:  LKIFSAGLWSLWFDRNKALNKEEVPNAEIIAEWVLNYLQDFHSVNPCSVVKGL--KYGPAGFRVHE---HWKPPAKGALKLNVDVSCHPSQNRVGLYVIV
        L+ F+  LWSLW  RNK  +  +    E++    ++YL++FHS     + KGL   +  AG + ++    W  P  G LKLN + S + ++   G   I+
Subjt:  LKIFSAGLWSLWFDRNKALNKEEVPNAEIIAEWVLNYLQDFHSVNPCSVVKGL--KYGPAGFRVHE---HWKPPAKGALKLNVDVSCHPSQNRVGLYVIV

Query:  QDSAGACIAAKSKDVDVALDPYVVESLSLILGLHFVLERGVNKVWVESDAKGVVEAVNKGHTSNSALGALFCEAKSLLHNNVFLGCSYVPKEANVAAHSL
        Q+S+G CIAA S+       P ++E L+LI  L ++ +  +   ++ESD+  V+  +   H S S    L  +    + N   +  ++V + AN   H+L
Subjt:  QDSAGACIAAKSKDVDVALDPYVVESLSLILGLHFVLERGVNKVWVESDAKGVVEAVNKGHTSNSALGALFCEAKSLLHNNVFLGCSYVPKEANVAAHSL

Query:  AHWACNNGLSMDWFSDFPPCLENNMSLVM
        A++A +      W  + PP L   MS+V+
Subjt:  AHWACNNGLSMDWFSDFPPCLENNMSLVM

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G02650.1 Ribonuclease H-like superfamily protein1.0e-0822.84Show/hide
Query:  LWSLWFDRNKALNKEEVPNAEIIA--------EWVLNYLQDFHSVNPCSVVKGLKYGPAGFRVHEHWKPPAKGALKLNVDVSCHPSQNRVGLYVIVQDSA
        +W LW  RN  L +++  + +  A        EW LN  +   + N       ++      R    W PP +G +K N D               +++  
Subjt:  LWSLWFDRNKALNKEEVPNAEIIA--------EWVLNYLQDFHSVNPCSVVKGLKYGPAGFRVHEHWKPPAKGALKLNVDVSCHPSQNRVGLYVIVQDSA

Query:  GACIAAKSKDVDVALDPYVVESLSLILGLHFVLERGVNKVWVESDAKGVVEAVNKGHTSNSALGALFCEAKSLLHNNVFLGCSYVPKEANVAAHSLA
        G  +   +  +  +      E+L  +  L  +   G+  VW ESD+K +V  +N G   +S LG L  + +  +    +    +V +E N AA +LA
Subjt:  GACIAAKSKDVDVALDPYVVESLSLILGLHFVLERGVNKVWVESDAKGVVEAVNKGHTSNSALGALFCEAKSLLHNNVFLGCSYVPKEANVAAHSLA


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATGATTTTGAAAATTTTTAGTGCTGGTTTATGGTCATTATGGTTTGATAGAAATAAAGCGTTAAACAAAGAAGAAGTCCCAAATGCTGAAATCATAGCAGAATGGGT
TTTGAATTACCTTCAAGATTTTCACTCGGTTAACCCTTGTAGTGTTGTTAAGGGGCTTAAATATGGACCTGCTGGTTTTCGTGTGCATGAACATTGGAAGCCTCCAGCGA
AGGGAGCTTTAAAGCTAAATGTAGACGTTTCCTGCCATCCTAGCCAAAATCGGGTAGGATTATATGTGATCGTCCAAGACTCCGCTGGGGCTTGTATTGCTGCGAAGTCC
AAAGATGTTGATGTTGCACTCGATCCATATGTTGTTGAATCTTTGTCGTTAATCCTTGGACTGCACTTTGTTCTTGAGAGAGGAGTCAATAAAGTTTGGGTCGAATCTGA
TGCCAAAGGTGTTGTGGAGGCGGTGAACAAGGGGCACACATCAAATTCTGCCCTTGGTGCTCTCTTCTGTGAAGCAAAATCCCTTCTACATAATAATGTCTTTTTAGGTT
GTTCGTATGTTCCAAAGGAAGCTAATGTTGCTGCTCATTCTTTGGCCCATTGGGCTTGTAATAATGGTTTATCCATGGACTGGTTTTCTGATTTCCCTCCATGCTTAGAA
AACAATATGAGTTTAGTGATGTAA
mRNA sequenceShow/hide mRNA sequence
ATGATGATTTTGAAAATTTTTAGTGCTGGTTTATGGTCATTATGGTTTGATAGAAATAAAGCGTTAAACAAAGAAGAAGTCCCAAATGCTGAAATCATAGCAGAATGGGT
TTTGAATTACCTTCAAGATTTTCACTCGGTTAACCCTTGTAGTGTTGTTAAGGGGCTTAAATATGGACCTGCTGGTTTTCGTGTGCATGAACATTGGAAGCCTCCAGCGA
AGGGAGCTTTAAAGCTAAATGTAGACGTTTCCTGCCATCCTAGCCAAAATCGGGTAGGATTATATGTGATCGTCCAAGACTCCGCTGGGGCTTGTATTGCTGCGAAGTCC
AAAGATGTTGATGTTGCACTCGATCCATATGTTGTTGAATCTTTGTCGTTAATCCTTGGACTGCACTTTGTTCTTGAGAGAGGAGTCAATAAAGTTTGGGTCGAATCTGA
TGCCAAAGGTGTTGTGGAGGCGGTGAACAAGGGGCACACATCAAATTCTGCCCTTGGTGCTCTCTTCTGTGAAGCAAAATCCCTTCTACATAATAATGTCTTTTTAGGTT
GTTCGTATGTTCCAAAGGAAGCTAATGTTGCTGCTCATTCTTTGGCCCATTGGGCTTGTAATAATGGTTTATCCATGGACTGGTTTTCTGATTTCCCTCCATGCTTAGAA
AACAATATGAGTTTAGTGATGTAA
Protein sequenceShow/hide protein sequence
MMILKIFSAGLWSLWFDRNKALNKEEVPNAEIIAEWVLNYLQDFHSVNPCSVVKGLKYGPAGFRVHEHWKPPAKGALKLNVDVSCHPSQNRVGLYVIVQDSAGACIAAKS
KDVDVALDPYVVESLSLILGLHFVLERGVNKVWVESDAKGVVEAVNKGHTSNSALGALFCEAKSLLHNNVFLGCSYVPKEANVAAHSLAHWACNNGLSMDWFSDFPPCLE
NNMSLVM