; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Sed0013394 (gene) of Chayote v1 genome

Gene IDSed0013394
OrganismSechium edule (Chayote v1)
Description50S ribosomal protein L18
Genome locationLG11:2449062..2452378
RNA-Seq ExpressionSed0013394
SyntenySed0013394
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0098655 - cation transmembrane transport (biological process)
GO:0005737 - cytoplasm (cellular component)
GO:0005840 - ribosome (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
GO:0005524 - ATP binding (molecular function)
GO:0008097 - 5S rRNA binding (molecular function)
GO:0019829 - ATPase-coupled cation transmembrane transporter activity (molecular function)
InterPro domainsIPR005484 - Ribosomal protein L18


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004139203.1 uncharacterized protein LOC101215592 [Cucumis sativus]5.2e-8588.24Show/hide
Query:  LMKHFLANMRKHVVCAHEVNSIRPYLFVPTSEFHKGEVRAA-RSFFGVEDFLDDENSRPYTYQKGKVSKNPKKHISFKKRTVAYMEPFTLDVLISKRFVS
        ++KHFL NMRKHVVCA EVN  RPYL VPTS+FHKGEV  A RSFFG+EDFLDD+NSRPYTYQK K SKNPKKHISFK+RT+AYMEPFTLDV ISKRFVS
Subjt:  LMKHFLANMRKHVVCAHEVNSIRPYLFVPTSEFHKGEVRAA-RSFFGVEDFLDDENSRPYTYQKGKVSKNPKKHISFKKRTVAYMEPFTLDVLISKRFVS

Query:  ASLTHRATFKQVAVAGTNSKDIKAVLKSRSDIPACLAVGAILAERAREADVYTASYTPRERDKFEGKIRAVVQSLIDNGIDVKIYLE
        ASLTHR T KQVAVAGTNSKDIKAVL+SRSDIPACLAVG ILAERAREADVYTASYTPRERDKFEGKIRAVVQSLIDNGIDVKIYLE
Subjt:  ASLTHRATFKQVAVAGTNSKDIKAVLKSRSDIPACLAVGAILAERAREADVYTASYTPRERDKFEGKIRAVVQSLIDNGIDVKIYLE

XP_008455473.1 PREDICTED: 50S ribosomal protein L18 [Cucumis melo]2.6e-8488.24Show/hide
Query:  LMKHFLANMRKHVVCAHEVNSIRPYLFVPTSEFHKGEVRAA-RSFFGVEDFLDDENSRPYTYQKGKVSKNPKKHISFKKRTVAYMEPFTLDVLISKRFVS
        ++KHFL NM KHVVCA EVN  RPYL VPTS+FHKGEV  A RSFFGVEDFLDD+NSRPYTYQK K SKNPKKHISFK+RT+AYMEPFTLDV ISKRFVS
Subjt:  LMKHFLANMRKHVVCAHEVNSIRPYLFVPTSEFHKGEVRAA-RSFFGVEDFLDDENSRPYTYQKGKVSKNPKKHISFKKRTVAYMEPFTLDVLISKRFVS

Query:  ASLTHRATFKQVAVAGTNSKDIKAVLKSRSDIPACLAVGAILAERAREADVYTASYTPRERDKFEGKIRAVVQSLIDNGIDVKIYLE
        ASLTHR T KQVAVAGTNSKDIKAVL+SRSDIPACLAVG ILAERAREADVYTASYTPRERDKFEGKIRAVVQSLIDNGIDVKIYLE
Subjt:  ASLTHRATFKQVAVAGTNSKDIKAVLKSRSDIPACLAVGAILAERAREADVYTASYTPRERDKFEGKIRAVVQSLIDNGIDVKIYLE

XP_022150717.1 uncharacterized protein LOC111018783 [Momordica charantia]8.0e-8689.3Show/hide
Query:  LMKHFLANMRKHVVCAHEVNSIRPYLFVPTSEFHKGEVR-AARSFFGVEDFLDDENSRPYTYQKGKVSKNPKKHISFKKRTVAYMEPFTLDVLISKRFVS
        ++KHFL  MRKHVVC  EVN +RPY FVPTS+FHKGEV  A RSFFGVEDFLDD+NSRPYTYQKGK SKNPKKHISFK+RTVAYMEPFTLDV ISKRFVS
Subjt:  LMKHFLANMRKHVVCAHEVNSIRPYLFVPTSEFHKGEVR-AARSFFGVEDFLDDENSRPYTYQKGKVSKNPKKHISFKKRTVAYMEPFTLDVLISKRFVS

Query:  ASLTHRATFKQVAVAGTNSKDIKAVLKSRSDIPACLAVGAILAERAREADVYTASYTPRERDKFEGKIRAVVQSLIDNGIDVKIYLE
        ASLTHR T KQVAVAGTNSKDIKAVLKSRSDIPACLAVG+ILAERAREADVYTASYTPRERDKFEGKIRAVVQSLIDNGIDVKIYLE
Subjt:  ASLTHRATFKQVAVAGTNSKDIKAVLKSRSDIPACLAVGAILAERAREADVYTASYTPRERDKFEGKIRAVVQSLIDNGIDVKIYLE

XP_022999138.1 uncharacterized protein LOC111493611 [Cucurbita maxima]2.0e-8487.17Show/hide
Query:  LMKHFLANMRKHVVCAHEVNSIRPYLFVPTSEFHKGEVR-AARSFFGVEDFLDDENSRPYTYQKGKVSKNPKKHISFKKRTVAYMEPFTLDVLISKRFVS
        ++KH L NMRKHVVC+ EVN  RPYLFVPTS+FHKGE   A RSFFGVEDF+DD+NSRPYTYQKGK SKNPKKH+SFK+RTVAYMEPFTLDV ISKRFVS
Subjt:  LMKHFLANMRKHVVCAHEVNSIRPYLFVPTSEFHKGEVR-AARSFFGVEDFLDDENSRPYTYQKGKVSKNPKKHISFKKRTVAYMEPFTLDVLISKRFVS

Query:  ASLTHRATFKQVAVAGTNSKDIKAVLKSRSDIPACLAVGAILAERAREADVYTASYTPRERDKFEGKIRAVVQSLIDNGIDVKIYLE
        ASLTHR T KQVAVAGTNSKDIKAVLKSRSDIPACLAVG IL+ERA+EADVYTASYTPRERDKFEGKIRAVVQSLIDNGIDVKIYLE
Subjt:  ASLTHRATFKQVAVAGTNSKDIKAVLKSRSDIPACLAVGAILAERAREADVYTASYTPRERDKFEGKIRAVVQSLIDNGIDVKIYLE

XP_038890306.1 50S ribosomal protein L18 [Benincasa hispida]1.8e-8589.3Show/hide
Query:  LMKHFLANMRKHVVCAHEVNSIRPYLFVPTSEFHKGEVR-AARSFFGVEDFLDDENSRPYTYQKGKVSKNPKKHISFKKRTVAYMEPFTLDVLISKRFVS
        +++HFL NMRKHVVCA EVN +RPYL VPTS+FHKGEV  A RSFFGVEDFLDD+NSRPYTYQK K SKNPKKHISFK+RTVAYMEPFTLDV ISKRFVS
Subjt:  LMKHFLANMRKHVVCAHEVNSIRPYLFVPTSEFHKGEVR-AARSFFGVEDFLDDENSRPYTYQKGKVSKNPKKHISFKKRTVAYMEPFTLDVLISKRFVS

Query:  ASLTHRATFKQVAVAGTNSKDIKAVLKSRSDIPACLAVGAILAERAREADVYTASYTPRERDKFEGKIRAVVQSLIDNGIDVKIYLE
        ASLTHR T KQVAVAGTNSKDIKAVLKSRSDIPACLAVG ILAERAREADVYTASYTPRERDKFEGKIRAVVQSLIDNGIDVKIYLE
Subjt:  ASLTHRATFKQVAVAGTNSKDIKAVLKSRSDIPACLAVGAILAERAREADVYTASYTPRERDKFEGKIRAVVQSLIDNGIDVKIYLE

TrEMBL top hitse value%identityAlignment
A0A0A0LLI4 Uncharacterized protein2.5e-8588.24Show/hide
Query:  LMKHFLANMRKHVVCAHEVNSIRPYLFVPTSEFHKGEVRAA-RSFFGVEDFLDDENSRPYTYQKGKVSKNPKKHISFKKRTVAYMEPFTLDVLISKRFVS
        ++KHFL NMRKHVVCA EVN  RPYL VPTS+FHKGEV  A RSFFG+EDFLDD+NSRPYTYQK K SKNPKKHISFK+RT+AYMEPFTLDV ISKRFVS
Subjt:  LMKHFLANMRKHVVCAHEVNSIRPYLFVPTSEFHKGEVRAA-RSFFGVEDFLDDENSRPYTYQKGKVSKNPKKHISFKKRTVAYMEPFTLDVLISKRFVS

Query:  ASLTHRATFKQVAVAGTNSKDIKAVLKSRSDIPACLAVGAILAERAREADVYTASYTPRERDKFEGKIRAVVQSLIDNGIDVKIYLE
        ASLTHR T KQVAVAGTNSKDIKAVL+SRSDIPACLAVG ILAERAREADVYTASYTPRERDKFEGKIRAVVQSLIDNGIDVKIYLE
Subjt:  ASLTHRATFKQVAVAGTNSKDIKAVLKSRSDIPACLAVGAILAERAREADVYTASYTPRERDKFEGKIRAVVQSLIDNGIDVKIYLE

A0A1S3C286 50S ribosomal protein L181.3e-8488.24Show/hide
Query:  LMKHFLANMRKHVVCAHEVNSIRPYLFVPTSEFHKGEVRAA-RSFFGVEDFLDDENSRPYTYQKGKVSKNPKKHISFKKRTVAYMEPFTLDVLISKRFVS
        ++KHFL NM KHVVCA EVN  RPYL VPTS+FHKGEV  A RSFFGVEDFLDD+NSRPYTYQK K SKNPKKHISFK+RT+AYMEPFTLDV ISKRFVS
Subjt:  LMKHFLANMRKHVVCAHEVNSIRPYLFVPTSEFHKGEVRAA-RSFFGVEDFLDDENSRPYTYQKGKVSKNPKKHISFKKRTVAYMEPFTLDVLISKRFVS

Query:  ASLTHRATFKQVAVAGTNSKDIKAVLKSRSDIPACLAVGAILAERAREADVYTASYTPRERDKFEGKIRAVVQSLIDNGIDVKIYLE
        ASLTHR T KQVAVAGTNSKDIKAVL+SRSDIPACLAVG ILAERAREADVYTASYTPRERDKFEGKIRAVVQSLIDNGIDVKIYLE
Subjt:  ASLTHRATFKQVAVAGTNSKDIKAVLKSRSDIPACLAVGAILAERAREADVYTASYTPRERDKFEGKIRAVVQSLIDNGIDVKIYLE

A0A6J1DBH5 uncharacterized protein LOC1110187833.9e-8689.3Show/hide
Query:  LMKHFLANMRKHVVCAHEVNSIRPYLFVPTSEFHKGEVR-AARSFFGVEDFLDDENSRPYTYQKGKVSKNPKKHISFKKRTVAYMEPFTLDVLISKRFVS
        ++KHFL  MRKHVVC  EVN +RPY FVPTS+FHKGEV  A RSFFGVEDFLDD+NSRPYTYQKGK SKNPKKHISFK+RTVAYMEPFTLDV ISKRFVS
Subjt:  LMKHFLANMRKHVVCAHEVNSIRPYLFVPTSEFHKGEVR-AARSFFGVEDFLDDENSRPYTYQKGKVSKNPKKHISFKKRTVAYMEPFTLDVLISKRFVS

Query:  ASLTHRATFKQVAVAGTNSKDIKAVLKSRSDIPACLAVGAILAERAREADVYTASYTPRERDKFEGKIRAVVQSLIDNGIDVKIYLE
        ASLTHR T KQVAVAGTNSKDIKAVLKSRSDIPACLAVG+ILAERAREADVYTASYTPRERDKFEGKIRAVVQSLIDNGIDVKIYLE
Subjt:  ASLTHRATFKQVAVAGTNSKDIKAVLKSRSDIPACLAVGAILAERAREADVYTASYTPRERDKFEGKIRAVVQSLIDNGIDVKIYLE

A0A6J1G387 uncharacterized protein LOC1114504202.8e-8487.17Show/hide
Query:  LMKHFLANMRKHVVCAHEVNSIRPYLFVPTSEFHKGEVR-AARSFFGVEDFLDDENSRPYTYQKGKVSKNPKKHISFKKRTVAYMEPFTLDVLISKRFVS
        ++KH L NMRKH VCA EVN  RPYLFVPTS+FHKGE   A RSFFGVEDF+DD+NSRPYTYQKGK SKNPKKHISFK+RTVAYMEPFTLDV ISKRFVS
Subjt:  LMKHFLANMRKHVVCAHEVNSIRPYLFVPTSEFHKGEVR-AARSFFGVEDFLDDENSRPYTYQKGKVSKNPKKHISFKKRTVAYMEPFTLDVLISKRFVS

Query:  ASLTHRATFKQVAVAGTNSKDIKAVLKSRSDIPACLAVGAILAERAREADVYTASYTPRERDKFEGKIRAVVQSLIDNGIDVKIYLE
        ASLTHR T KQVAVAGTNSKDIKAVL+SRSDIPACLAVG IL+ERA+EADVYTASYTPRERDKFEGKIRAVVQSLIDNGIDVKIYLE
Subjt:  ASLTHRATFKQVAVAGTNSKDIKAVLKSRSDIPACLAVGAILAERAREADVYTASYTPRERDKFEGKIRAVVQSLIDNGIDVKIYLE

A0A6J1KIR9 uncharacterized protein LOC1114936119.6e-8587.17Show/hide
Query:  LMKHFLANMRKHVVCAHEVNSIRPYLFVPTSEFHKGEVR-AARSFFGVEDFLDDENSRPYTYQKGKVSKNPKKHISFKKRTVAYMEPFTLDVLISKRFVS
        ++KH L NMRKHVVC+ EVN  RPYLFVPTS+FHKGE   A RSFFGVEDF+DD+NSRPYTYQKGK SKNPKKH+SFK+RTVAYMEPFTLDV ISKRFVS
Subjt:  LMKHFLANMRKHVVCAHEVNSIRPYLFVPTSEFHKGEVR-AARSFFGVEDFLDDENSRPYTYQKGKVSKNPKKHISFKKRTVAYMEPFTLDVLISKRFVS

Query:  ASLTHRATFKQVAVAGTNSKDIKAVLKSRSDIPACLAVGAILAERAREADVYTASYTPRERDKFEGKIRAVVQSLIDNGIDVKIYLE
        ASLTHR T KQVAVAGTNSKDIKAVLKSRSDIPACLAVG IL+ERA+EADVYTASYTPRERDKFEGKIRAVVQSLIDNGIDVKIYLE
Subjt:  ASLTHRATFKQVAVAGTNSKDIKAVLKSRSDIPACLAVGAILAERAREADVYTASYTPRERDKFEGKIRAVVQSLIDNGIDVKIYLE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G08845.1 Ribosomal L18p/L5e family protein2.8e-6876.51Show/hide
Query:  IRPYLFVPTSEFHKGE-VRAARSFFGVEDFLDDENSRPYTYQKGKVSKNPKKHISFKKRTVAYMEPFTLDVLISKRFVSASLTHRATFKQVAVAGTNSKD
        +RP++   +  FH G  V A RSFFGVED++DD+ SRPYTYQK K SKNP KH+SFK+RTVAYMEPFTLDV ISKRFVSASLTHR T +QVAVAGTNSKD
Subjt:  IRPYLFVPTSEFHKGE-VRAARSFFGVEDFLDDENSRPYTYQKGKVSKNPKKHISFKKRTVAYMEPFTLDVLISKRFVSASLTHRATFKQVAVAGTNSKD

Query:  IKAVLKSRSDIPACLAVGAILAERAREADVYTASYTPRERDKFEGKIRAVVQSLIDNGIDVKIYLE
        +KAVL+SR DIPAC+++G IL+ERA+EADVYTASYTPR++DKFEGKIRAVVQSLIDNGIDVKIYL+
Subjt:  IKAVLKSRSDIPACLAVGAILAERAREADVYTASYTPRERDKFEGKIRAVVQSLIDNGIDVKIYLE

AT1G08845.2 Ribosomal L18p/L5e family protein3.6e-6868.42Show/hide
Query:  MLMKHFLA--NMRKHVVCAHEVNSIRPYLFVPTSEFHKGE-VRAARSFFGVEDFLDDENSRPYTYQKGKVSKNPKKHISFKKRTVAYMEPFTLDVLISKR
        +++K  +A  ++ K  +       +RP++   +  FH G  V A RSFFGVED++DD+ SRPYTYQK K SKNP KH+SFK+RTVAYMEPFTLDV ISKR
Subjt:  MLMKHFLA--NMRKHVVCAHEVNSIRPYLFVPTSEFHKGE-VRAARSFFGVEDFLDDENSRPYTYQKGKVSKNPKKHISFKKRTVAYMEPFTLDVLISKR

Query:  FVSASLTHRATFKQVAVAGTNSKDIKAVLKSRSDIPACLAVGAILAERAREADVYTASYTPRERDKFEGKIRAVVQSLIDNGIDVKIYLE
        FVSASLTHR T +QVAVAGTNSKD+KAVL+SR DIPAC+++G IL+ERA+EADVYTASYTPR++DKFEGKIRAVVQSLIDNGIDVKIYL+
Subjt:  FVSASLTHRATFKQVAVAGTNSKDIKAVLKSRSDIPACLAVGAILAERAREADVYTASYTPRERDKFEGKIRAVVQSLIDNGIDVKIYLE

AT3G20230.1 Ribosomal L18p/L5e family protein1.5e-2141.88Show/hide
Query:  KGKVSKNPKKHISFKKRTVAYMEPFTLDVLISKRFVSASLTHRATFKQVAVAGTNSKDIKAVLKSRSDIPACLAVGAILAERAREADVYTASYTPRERDK
        +G+ +K P +  S+K+RT  YM PF L+V  S++F+ A + HR T K ++VA TN++DI+  + S  D  AC  +G ++AER+ EADVY  SY PR+ ++
Subjt:  KGKVSKNPKKHISFKKRTVAYMEPFTLDVLISKRFVSASLTHRATFKQVAVAGTNSKDIKAVLKSRSDIPACLAVGAILAERAREADVYTASYTPRERDK

Query:  FEGKIRAVVQSLIDNGI
         EGK+  V+ ++ ++GI
Subjt:  FEGKIRAVVQSLIDNGI

AT3G22450.1 Ribosomal L18p/L5e family protein7.1e-2447.06Show/hide
Query:  KNPKKHISFKKRTVAYMEPFTLDVLISKRFVSASLTHRATFKQVAVAGTNSKDIKAVLKSRSDIPACLAVGAILAERAREADVYTASYTPRERDKFEGKI
        K  ++  +F + T  +  PF LD+ ISK  V A + HR T K V VA + SKD+K  L SR ++ AC AVGA+LA+R+ E D++   YTPR+ DK EGK+
Subjt:  KNPKKHISFKKRTVAYMEPFTLDVLISKRFVSASLTHRATFKQVAVAGTNSKDIKAVLKSRSDIPACLAVGAILAERAREADVYTASYTPRERDKFEGKI

Query:  RAVVQSLIDNGIDVKIYLE
        + V+Q+LIDNG++VK+ L+
Subjt:  RAVVQSLIDNGIDVKIYLE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTGATGAAACACTTTCTTGCAAATATGCGGAAACACGTGGTTTGTGCACATGAAGTAAACAGCATTAGGCCTTATTTGTTTGTGCCAACAAGTGAATTTCATAAGGG
GGAGGTTCGTGCAGCTAGAAGTTTTTTTGGTGTTGAAGATTTCTTAGATGATGAAAACAGTCGGCCTTATACATATCAAAAGGGGAAGGTATCCAAAAATCCCAAGAAGC
ACATATCATTTAAGAAACGGACAGTAGCCTACATGGAACCATTTACACTCGACGTTTTAATCTCAAAGCGGTTCGTTTCGGCATCACTTACGCATAGGGCGACTTTCAAA
CAAGTTGCAGTTGCAGGTACGAACTCAAAAGATATTAAAGCTGTTCTTAAATCTCGTTCAGACATACCTGCTTGCTTGGCTGTTGGTGCTATTTTAGCTGAGAGAGCTAG
AGAAGCTGATGTTTATACTGCGAGTTATACCCCTAGAGAGAGGGACAAATTTGAAGGCAAAATAAGAGCTGTGGTTCAGTCTCTTATTGATAATGGGATAGATGTGAAAA
TTTATCTGGAGTAG
mRNA sequenceShow/hide mRNA sequence
TTTTAAAAATAGATAATAAAATCTAAAACTGGAACTAATGTTTATACTCTTAATTTTTTAAAAAATAAAAACCAAAATTTTTATTGATTAGGGTTAATTTATTCTAGTTT
CTAACCCTATATAACTTGATTTTTTAAAATATAAATAAAAGGGAATTTACTCATGACAACAACTTTTGGGTATAATTATAACATTTTTCTTTGTAAAATACTGTTTTAAT
TTTTTTTTTTTTAATTTTACTTTTTACCGATCAAGCATCGATTGAGAGCTATTGATAGGAGCATAGACATAACAATTGAAATGTGACTATAAAATTAAAATAGATTACCA
TTCATCAAGATAATTAACGTGCTACCAACCCATTTAATTAAAAAAGAAATAATTGTATTTTCACATAATTTCTAATAAGAATTTATTAAGTAGTGAAACTGTCATGGTGC
GTCCCTTTTAAAAAAAAATCCCTAATTGTTCCTGCCTCTGTCAATTCTCACGCAAATTCACCTGCTGGCCTTGCACCACTCCACGCGATTGCAGGCGACGGGGACGGTGA
CGGCTTCAGCTCCGGCAACGACGGACGGTGGCGGTAAACTCGAACAGAGTCGGCAGTGACCATTTACTGAAATTTCTCTCTTTGGGTGTTCACAGGAGTTGAAATTGGGT
TAGTACAAAAAGAGGGTTGGTTTGTAGAAAAAGGAAAACATGTTGATGAAACACTTTCTTGCAAATATGCGGAAACACGTGGTTTGTGCACATGAAGTAAACAGCATTAG
GCCTTATTTGTTTGTGCCAACAAGTGAATTTCATAAGGGGGAGGTTCGTGCAGCTAGAAGTTTTTTTGGTGTTGAAGATTTCTTAGATGATGAAAACAGTCGGCCTTATA
CATATCAAAAGGGGAAGGTATCCAAAAATCCCAAGAAGCACATATCATTTAAGAAACGGACAGTAGCCTACATGGAACCATTTACACTCGACGTTTTAATCTCAAAGCGG
TTCGTTTCGGCATCACTTACGCATAGGGCGACTTTCAAACAAGTTGCAGTTGCAGGTACGAACTCAAAAGATATTAAAGCTGTTCTTAAATCTCGTTCAGACATACCTGC
TTGCTTGGCTGTTGGTGCTATTTTAGCTGAGAGAGCTAGAGAAGCTGATGTTTATACTGCGAGTTATACCCCTAGAGAGAGGGACAAATTTGAAGGCAAAATAAGAGCTG
TGGTTCAGTCTCTTATTGATAATGGGATAGATGTGAAAATTTATCTGGAGTAGAATAGCAGATCTTGTTTCTGAAACATCACTTCTGAATCTTTGATTAATGGTCTTTTG
AATTTTTCACTCAGCTGTTATAATAATATCAAGCTAACTTCCCA
Protein sequenceShow/hide protein sequence
MLMKHFLANMRKHVVCAHEVNSIRPYLFVPTSEFHKGEVRAARSFFGVEDFLDDENSRPYTYQKGKVSKNPKKHISFKKRTVAYMEPFTLDVLISKRFVSASLTHRATFK
QVAVAGTNSKDIKAVLKSRSDIPACLAVGAILAERAREADVYTASYTPRERDKFEGKIRAVVQSLIDNGIDVKIYLE