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Sed0013469 (gene) of Chayote v1 genome

Gene IDSed0013469
OrganismSechium edule (Chayote v1)
DescriptionRNase H domain-containing protein
Genome locationLG06:26210123..26210701
RNA-Seq ExpressionSed0013469
SyntenySed0013469
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF7822031.1 putative ribonuclease H-like domain, reverse transcriptase zinc-binding domain-containing protein [Senna tora]1.1e-1632.39Show/hide
Query:  MNKNRDLGSGSSSFM-PHSAVHFWTPPNLGSFKLSIDAACRPNLGKTGCGSIIRNHFGSGIVAEACLLDTGLDAFVAEALALLRGLKLVVNSGLNNVVVE
        +N   D  S  S+FM P S+   W PP+  + K+++DA+CR N G+   G ++RN  G  ++A +  ++TG      EALA+L G+K       N +++E
Subjt:  MNKNRDLGSGSSSFM-PHSAVHFWTPPNLGSFKLSIDAACRPNLGKTGCGSIIRNHFGSGIVAEACLLDTGLDAFVAEALALLRGLKLVVNSGLNNVVVE

Query:  SDSKSLVEAISKGKWLESAYGTIIGEIRDLMNLECFLNFSYISRDANGVAHRLA----QWACNASSSMIWVTNFPP
        SD++ +V  ++KG    S  G +  +I +L +    + F+++ R+AN VAH LA     +  N+ + ++W+ +FPP
Subjt:  SDSKSLVEAISKGKWLESAYGTIIGEIRDLMNLECFLNFSYISRDANGVAHRLA----QWACNASSSMIWVTNFPP

RYE02783.1 reverse transcriptase-like protein, partial [Rickettsiaceae bacterium]1.1e-1636.31Show/hide
Query:  WTPPNLGSFKLSIDAACRPNLGKTGCGSIIRNHFGSGIVAEACLLDTGLDAFVAEALALLRGLKLVVNSGLNNVVVESDSKSLVEAISKGKWLESAYGTI
        WTPP  G+  +++DAA   + G  G G I+R+H G  I ++   L  G    +AEA A+L+G++LV + G     ++SD   +V  I +G    +  GTI
Subjt:  WTPPNLGSFKLSIDAACRPNLGKTGCGSIIRNHFGSGIVAEACLLDTGLDAFVAEALALLRGLKLVVNSGLNNVVVESDSKSLVEAISKGKWLESAYGTI

Query:  IGEI-RDLMNLECFLNFSYISRDANGVAHRLAQWACNASSSMIWVTNFPPWLESVLR
        +  I R++  LE F    +ISR  N  AH LA++A N  SS  W+   PP  E  +R
Subjt:  IGEI-RDLMNLECFLNFSYISRDANGVAHRLAQWACNASSSMIWVTNFPPWLESVLR

TXG57364.1 hypothetical protein EZV62_018677 [Acer yangbiense]2.8e-1737.18Show/hide
Query:  WTPPNLGSFKLSIDAACRPNLGKTGCGSIIRNHFGSGIVAEACLLDTGLDAFVAEALALLRGLKLVVNSGLNNVVVESDSKSLVEAISKGKWLESAYGTI
        W  P  G FKL+ DAA      K G G IIR+  G+ + +        +    AEA+A+ RG+   V +G   +VVESD+K +VE I+KG   ++ YG +
Subjt:  WTPPNLGSFKLSIDAACRPNLGKTGCGSIIRNHFGSGIVAEACLLDTGLDAFVAEALALLRGLKLVVNSGLNNVVVESDSKSLVEAISKGKWLESAYGTI

Query:  IGEIRDLMNLECF-LNFSYISRDANGVAHRLAQWACNASSSMIWVTNFPPWLESVL
        I +I  L+N     ++ ++ SR++NGVAH LA  A  A+ S  W+ + PP +ES++
Subjt:  IGEIRDLMNLECF-LNFSYISRDANGVAHRLAQWACNASSSMIWVTNFPPWLESVL

XP_023929347.1 uncharacterized protein LOC112040686 [Quercus suber]2.8e-1733.77Show/hide
Query:  HFWTPPNLGSFKLSIDAACRPNLGKTGCGSIIRNHFGSGIVAEACLLDTGLDAFVAEALALLRGLKLVVNSGLNNVVVESDSKSLVEAISKGKWLESAYG
        H W PP LG++KL+ DAA    L +TG G+IIRN  G  +VA + +     ++  AE +A  + L+  V++G + +++E D+ ++++AIS      S  G
Subjt:  HFWTPPNLGSFKLSIDAACRPNLGKTGCGSIIRNHFGSGIVAEACLLDTGLDAFVAEALALLRGLKLVVNSGLNNVVVESDSKSLVEAISKGKWLESAYG

Query:  TIIGEIRDLMNLECFLNFSYISRDANGVAHRLAQWACNASSSMIWVTNFPP
         ++ +IR L++   +   +   R  N VAH LAQ+A N    ++W+ + PP
Subjt:  TIIGEIRDLMNLECFLNFSYISRDANGVAHRLAQWACNASSSMIWVTNFPP

XP_027089582.1 uncharacterized protein LOC113710661 [Coffea arabica]2.8e-1732.78Show/hide
Query:  QMNKNRDLGSGSSSFMPHSAVHFWTPPNLGSFKLSIDAACRPNLGKTGCGSIIRNHFGSGIVAEACLLDTGLDAFVAEALALLRGLKLVVNSGLNNVVVE
        Q+  ++   +G+S  M +   H W PP+ G  K++ DAA   N    G G I R+  G+ + A      +   A + EA AL +GL +   +G   + ++
Subjt:  QMNKNRDLGSGSSSFMPHSAVHFWTPPNLGSFKLSIDAACRPNLGKTGCGSIIRNHFGSGIVAEACLLDTGLDAFVAEALALLRGLKLVVNSGLNNVVVE

Query:  SDSKSLVEAISKGKWLESAYGTIIGEIRDLMNLECFLNFSYISRDANGVAHRLAQWACNASSSMIWVTNFPPWLESVLRD
        +D K+ +E I K    E+  GTII +IR L +L     FS++ RD N  AH++AQ+A    S +IW  +FP WL+  +++
Subjt:  SDSKSLVEAISKGKWLESAYGTIIGEIRDLMNLECFLNFSYISRDANGVAHRLAQWACNASSSMIWVTNFPPWLESVLRD

TrEMBL top hitse value%identityAlignment
A0A2N9FY90 RNase H domain-containing protein2.3e-1737.58Show/hide
Query:  WTPPNLGSFKLSIDAACRPNLGKTGCGSIIRNHFGSGIVAEACLLDTGLDAFVAEALALLRGLKLVVNSGLNNVVVESDSKSLVEAISKGKWLESAYGTI
        W PP +G  K++ D A      K G G IIRN  G  ++A +  +     + V EALAL R L L +  G  +VV+E DS+ +V   S      S+YG I
Subjt:  WTPPNLGSFKLSIDAACRPNLGKTGCGSIIRNHFGSGIVAEACLLDTGLDAFVAEALALLRGLKLVVNSGLNNVVVESDSKSLVEAISKGKWLESAYGTI

Query:  IGEIRDLMNLECFLNFSYISRDANGVAHRLAQWACNASSSMIWVTNFPPWLESVLRD
        I +++ L        FS+  R AN VAH LA+ ACN      W+ + PP L SVL++
Subjt:  IGEIRDLMNLECFLNFSYISRDANGVAHRLAQWACNASSSMIWVTNFPPWLESVLRD

A0A4Q3DBE2 Reverse transcriptase-like protein (Fragment)5.1e-1736.31Show/hide
Query:  WTPPNLGSFKLSIDAACRPNLGKTGCGSIIRNHFGSGIVAEACLLDTGLDAFVAEALALLRGLKLVVNSGLNNVVVESDSKSLVEAISKGKWLESAYGTI
        WTPP  G+  +++DAA   + G  G G I+R+H G  I ++   L  G    +AEA A+L+G++LV + G     ++SD   +V  I +G    +  GTI
Subjt:  WTPPNLGSFKLSIDAACRPNLGKTGCGSIIRNHFGSGIVAEACLLDTGLDAFVAEALALLRGLKLVVNSGLNNVVVESDSKSLVEAISKGKWLESAYGTI

Query:  IGEI-RDLMNLECFLNFSYISRDANGVAHRLAQWACNASSSMIWVTNFPPWLESVLR
        +  I R++  LE F    +ISR  N  AH LA++A N  SS  W+   PP  E  +R
Subjt:  IGEI-RDLMNLECFLNFSYISRDANGVAHRLAQWACNASSSMIWVTNFPPWLESVLR

A0A5C7HKD5 Uncharacterized protein1.4e-1737.18Show/hide
Query:  WTPPNLGSFKLSIDAACRPNLGKTGCGSIIRNHFGSGIVAEACLLDTGLDAFVAEALALLRGLKLVVNSGLNNVVVESDSKSLVEAISKGKWLESAYGTI
        W  P  G FKL+ DAA      K G G IIR+  G+ + +        +    AEA+A+ RG+   V +G   +VVESD+K +VE I+KG   ++ YG +
Subjt:  WTPPNLGSFKLSIDAACRPNLGKTGCGSIIRNHFGSGIVAEACLLDTGLDAFVAEALALLRGLKLVVNSGLNNVVVESDSKSLVEAISKGKWLESAYGTI

Query:  IGEIRDLMNLECF-LNFSYISRDANGVAHRLAQWACNASSSMIWVTNFPPWLESVL
        I +I  L+N     ++ ++ SR++NGVAH LA  A  A+ S  W+ + PP +ES++
Subjt:  IGEIRDLMNLECF-LNFSYISRDANGVAHRLAQWACNASSSMIWVTNFPPWLESVL

A0A6P6UIH5 uncharacterized protein LOC1137106611.4e-1732.78Show/hide
Query:  QMNKNRDLGSGSSSFMPHSAVHFWTPPNLGSFKLSIDAACRPNLGKTGCGSIIRNHFGSGIVAEACLLDTGLDAFVAEALALLRGLKLVVNSGLNNVVVE
        Q+  ++   +G+S  M +   H W PP+ G  K++ DAA   N    G G I R+  G+ + A      +   A + EA AL +GL +   +G   + ++
Subjt:  QMNKNRDLGSGSSSFMPHSAVHFWTPPNLGSFKLSIDAACRPNLGKTGCGSIIRNHFGSGIVAEACLLDTGLDAFVAEALALLRGLKLVVNSGLNNVVVE

Query:  SDSKSLVEAISKGKWLESAYGTIIGEIRDLMNLECFLNFSYISRDANGVAHRLAQWACNASSSMIWVTNFPPWLESVLRD
        +D K+ +E I K    E+  GTII +IR L +L     FS++ RD N  AH++AQ+A    S +IW  +FP WL+  +++
Subjt:  SDSKSLVEAISKGKWLESAYGTIIGEIRDLMNLECFLNFSYISRDANGVAHRLAQWACNASSSMIWVTNFPPWLESVLRD

A0A6P9EME2 uncharacterized protein LOC1183481736.7e-1736Show/hide
Query:  WTPPNLGSFKLSIDAACRPNLGKTGCGSIIRNHFGSGIVA--EACLLDTGLDAFVAEALALLRGLKLVVNSGLNNVVVESDSKSLVEAISKGKWLESAYG
        W PP+ GS KL++DAA  P   K G G+++R+  G  ++A   A +L  G ++   E LA+ RG++  V  G++++VVESDS   ++A++      S  G
Subjt:  WTPPNLGSFKLSIDAACRPNLGKTGCGSIIRNHFGSGIVA--EACLLDTGLDAFVAEALALLRGLKLVVNSGLNNVVVESDSKSLVEAISKGKWLESAYG

Query:  TIIGEIRDLMNLECFLNFSYISRDANGVAHRLAQWACNASSSMIWVTNFP
         I  EI+ L +      FS++ R+ N VAH+LA+ AC   S  +W  + P
Subjt:  TIIGEIRDLMNLECFLNFSYISRDANGVAHRLAQWACNASSSMIWVTNFP

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G24090.1 RNase H family protein3.8e-0428.68Show/hide
Query:  LSIDAACRPNLGKTGCGSIIRNHFGSGIVAEACLLDTGLDAF---VAEALALLRGLKLVVNSGLNNVVVESDSKSLVEAISKGKWL--ESAYGTIIGEIR
        +  D A + N G +G  ++++   GS I    C +  GL       AE  AL+ GLK  +  G  N+ V+ DSK +   I KG+W         +  E +
Subjt:  LSIDAACRPNLGKTGCGSIIRNHFGSGIVAEACLLDTGLDAF---VAEALALLRGLKLVVNSGLNNVVVESDSKSLVEAISKGKWL--ESAYGTIIGEIR

Query:  DLMNLECFLNFSYISRDANGVAHRLAQWA
         L N       S++ R+ N  A   A  A
Subjt:  DLMNLECFLNFSYISRDANGVAHRLAQWA

AT2G13980.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein4.3e-0828.12Show/hide
Query:  WTPPNLGSFKLSIDAACRPNLGKTGCGSIIRNHFGSGIVAEACLLDTGLDAFVAEALALLRGLKLVVNSGLNNVVVESDSKSLVEAISKGKWLESAYGTI
        W  P     K + DA        +    IIRNH G      +  LD       AE  ALL  L+     G   V++E D ++L   +S G    +    +
Subjt:  WTPPNLGSFKLSIDAACRPNLGKTGCGSIIRNHFGSGIVAEACLLDTGLDAFVAEALALLRGLKLVVNSGLNNVVVESDSKSLVEAISKGKWLESAYGTI

Query:  IGEIRDLMNLECFLNFSYISRDANGVAHRLAQWACNASSSMIWVTNFPPWL-ESVLRDFG
        + +IR        + FS++ R  N VAH LA+  CN++         P WL +    DFG
Subjt:  IGEIRDLMNLECFLNFSYISRDANGVAHRLAQWACNASSSMIWVTNFPPWL-ESVLRDFG

AT5G61090.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein8.1e-0724.2Show/hide
Query:  MPHSAVHFWTPPNLGSFKLSIDAACRPNLGKTGCGSIIRNHFGSGIVAEACLLDTGLDAFVAEALALLRGLKLVVNSGLNNVVVESDSKSLVEAISKGKW
        +P      WTPP +   KL+I     P    T    I+R+  G  +          +   VA  LA+ +GLK + +SG   + +E+ S  ++ A++    
Subjt:  MPHSAVHFWTPPNLGSFKLSIDAACRPNLGKTGCGSIIRNHFGSGIVAEACLLDTGLDAFVAEALALLRGLKLVVNSGLNNVVVESDSKSLVEAISKGKW

Query:  LESAYGTIIGEIRDLMNLECFLNFSYISRDANGVAHRLAQWACNASSSMIWVTNFPP
        L     T++G  +D++  E   +  +IS++ N  A  LA+ +      +++   +PP
Subjt:  LESAYGTIIGEIRDLMNLECFLNFSYISRDANGVAHRLAQWACNASSSMIWVTNFPP


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
CAAATGAATAAAAATCGGGATCTGGGATCTGGCTCTAGTTCCTTTATGCCTCATTCGGCTGTCCATTTTTGGACTCCGCCTAATCTTGGATCGTTTAAGCTGTCGATTGA
TGCTGCTTGTCGTCCTAATTTGGGCAAAACTGGTTGTGGGTCGATTATTAGAAATCACTTTGGTTCTGGCATTGTTGCTGAAGCTTGCTTGCTAGATACGGGATTAGATG
CTTTTGTTGCTGAAGCGTTGGCTCTACTTAGAGGCCTTAAGCTGGTGGTGAATTCCGGCTTGAATAATGTGGTTGTTGAATCTGACTCTAAATCTCTTGTTGAAGCGATC
TCAAAAGGGAAATGGCTGGAGTCGGCTTATGGGACGATTATTGGTGAAATTAGGGATTTGATGAATTTAGAATGTTTTCTAAATTTTTCTTATATTAGCAGAGATGCAAA
TGGCGTTGCCCATAGATTAGCCCAATGGGCTTGTAATGCTAGTTCTTCTATGATTTGGGTTACAAATTTTCCTCCTTGGTTGGAGAGTGTATTACGGGATTTTGGTCCTC
CTCCTGTTTTGGATAGGCTCTTGCCTTGA
mRNA sequenceShow/hide mRNA sequence
CAAATGAATAAAAATCGGGATCTGGGATCTGGCTCTAGTTCCTTTATGCCTCATTCGGCTGTCCATTTTTGGACTCCGCCTAATCTTGGATCGTTTAAGCTGTCGATTGA
TGCTGCTTGTCGTCCTAATTTGGGCAAAACTGGTTGTGGGTCGATTATTAGAAATCACTTTGGTTCTGGCATTGTTGCTGAAGCTTGCTTGCTAGATACGGGATTAGATG
CTTTTGTTGCTGAAGCGTTGGCTCTACTTAGAGGCCTTAAGCTGGTGGTGAATTCCGGCTTGAATAATGTGGTTGTTGAATCTGACTCTAAATCTCTTGTTGAAGCGATC
TCAAAAGGGAAATGGCTGGAGTCGGCTTATGGGACGATTATTGGTGAAATTAGGGATTTGATGAATTTAGAATGTTTTCTAAATTTTTCTTATATTAGCAGAGATGCAAA
TGGCGTTGCCCATAGATTAGCCCAATGGGCTTGTAATGCTAGTTCTTCTATGATTTGGGTTACAAATTTTCCTCCTTGGTTGGAGAGTGTATTACGGGATTTTGGTCCTC
CTCCTGTTTTGGATAGGCTCTTGCCTTGA
Protein sequenceShow/hide protein sequence
QMNKNRDLGSGSSSFMPHSAVHFWTPPNLGSFKLSIDAACRPNLGKTGCGSIIRNHFGSGIVAEACLLDTGLDAFVAEALALLRGLKLVVNSGLNNVVVESDSKSLVEAI
SKGKWLESAYGTIIGEIRDLMNLECFLNFSYISRDANGVAHRLAQWACNASSSMIWVTNFPPWLESVLRDFGPPPVLDRLLP