CuGenDBv2

Gene ID	Sed0013474
Organism	Sechium edule (Chayote v1)
Description	cyclic phosphodiesterase-like
Genome location	LG10:1151163..1153953
RNA-Seq Expression	Sed0013474
Synteny	Sed0013474
Gene Ontology terms	GO:0009187 - cyclic nucleotide metabolic process (biological process) GO:0004112 - cyclic-nucleotide phosphodiesterase activity (molecular function) GO:0004113 - 2',3'-cyclic-nucleotide 3'-phosphodiesterase activity (molecular function) GO:0016874 - ligase activity (molecular function)
InterPro domains	IPR009097 - Cyclic phosphodiesterase IPR012386 - 2',3'-cyclic-nucleotide 3'-phosphodiesterase

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6581386.1 Cyclic phosphodiesterase, partial [Cucurbita argyrosperma subsp. sororia]

1.2e-89

85.34

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Query:  MANPES-----CELEKNVYSVWALPPDDVSIRIKTLMEGLRSDFGGPQFEPHITVVGAIRLSLDDALDKFRSACEGLKAYQATVDCVSTGTFFYQCVFLL
        MANPES      E EKNVYSVWALPP+DV+ RI+TLM  LRS+FGGPQFEPHITVVGAIRL+LDDAL+KFRSACEGLKAYQATVDCVSTGTFFYQCVFLL
Subjt:  MANPES-----CELEKNVYSVWALPPDDVSIRIKTLMEGLRSDFGGPQFEPHITVVGAIRLSLDDALDKFRSACEGLKAYQATVDCVSTGTFFYQCVFLL

Query:  VHPTAEVVQTSSHCCKHFGYNNSTPYMPHLSLLYANISDEKKQQAKEVANKLDEAIAGLSFPITRLALYKTDTGDETLKSWEKIAEHNLPS
        +HPT +VV+TSSHCC HFGYNNSTPYMPHLSLLYANISDE+K+QAKE+A KLDEAI GLSFPITRLALYKTDTGDETLKSWEKIAE +LPS
Subjt:  VHPTAEVVQTSSHCCKHFGYNNSTPYMPHLSLLYANISDEKKQQAKEVANKLDEAIAGLSFPITRLALYKTDTGDETLKSWEKIAEHNLPS

KAG7034670.1 Cyclic phosphodiesterase, partial [Cucurbita argyrosperma subsp. argyrosperma]

1.0e-88

84.82

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Query:  MANPES-----CELEKNVYSVWALPPDDVSIRIKTLMEGLRSDFGGPQFEPHITVVGAIRLSLDDALDKFRSACEGLKAYQATVDCVSTGTFFYQCVFLL
        MANPES      E EKNVYSVWALPP+DV+ RI+TLM  LRS+FGGPQFEPHITVVGAIRL+LDDAL+KFRSACEGLKAYQATVDCVSTGTFFYQCVFLL
Subjt:  MANPES-----CELEKNVYSVWALPPDDVSIRIKTLMEGLRSDFGGPQFEPHITVVGAIRLSLDDALDKFRSACEGLKAYQATVDCVSTGTFFYQCVFLL

Query:  VHPTAEVVQTSSHCCKHFGYNNSTPYMPHLSLLYANISDEKKQQAKEVANKLDEAIAGLSFPITRLALYKTDTGDETLKSWEKIAEHNLPS
        +HPT +VV+TSSHCC HFG NNSTPYMPHLSLLYANISDE+K+QAKE+A KLDEAI GLSFPITRLALYKTDTGDETLKSWEKIAE +LPS
Subjt:  VHPTAEVVQTSSHCCKHFGYNNSTPYMPHLSLLYANISDEKKQQAKEVANKLDEAIAGLSFPITRLALYKTDTGDETLKSWEKIAEHNLPS

XP_022978766.1 cyclic phosphodiesterase-like [Cucurbita maxima]

5.9e-89

84.29

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Query:  MANPES-----CELEKNVYSVWALPPDDVSIRIKTLMEGLRSDFGGPQFEPHITVVGAIRLSLDDALDKFRSACEGLKAYQATVDCVSTGTFFYQCVFLL
        MANPES      E EKNVYSVWALPP+DV+ RI+TLM  LRS+FGGPQFEPHITVVGAIRL+LDDAL+KFRSACEGLKAYQATVDCVSTGTFFYQCVFLL
Subjt:  MANPES-----CELEKNVYSVWALPPDDVSIRIKTLMEGLRSDFGGPQFEPHITVVGAIRLSLDDALDKFRSACEGLKAYQATVDCVSTGTFFYQCVFLL

Query:  VHPTAEVVQTSSHCCKHFGYNNSTPYMPHLSLLYANISDEKKQQAKEVANKLDEAIAGLSFPITRLALYKTDTGDETLKSWEKIAEHNLPS
        +HPT +VV+TSSHCC HFGY NSTPYMPHLSLLYANISDE+K+QAKE+A KLDEAI GLSFP+TRLALYKTDTGDETLKSWEKIAE +LPS
Subjt:  VHPTAEVVQTSSHCCKHFGYNNSTPYMPHLSLLYANISDEKKQQAKEVANKLDEAIAGLSFPITRLALYKTDTGDETLKSWEKIAEHNLPS

XP_023522563.1 cyclic phosphodiesterase-like [Cucurbita pepo subsp. pepo]

2.7e-89

85.34

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Query:  MANPES-----CELEKNVYSVWALPPDDVSIRIKTLMEGLRSDFGGPQFEPHITVVGAIRLSLDDALDKFRSACEGLKAYQATVDCVSTGTFFYQCVFLL
        MANPES      E EKNVYSVWALPP+DV+ RI+TLM  LRS+FGGPQFEPHITVVGAIRL+LDDAL+KFRSACEGLKAYQATVDCVSTGTFFYQCVFLL
Subjt:  MANPES-----CELEKNVYSVWALPPDDVSIRIKTLMEGLRSDFGGPQFEPHITVVGAIRLSLDDALDKFRSACEGLKAYQATVDCVSTGTFFYQCVFLL

Query:  VHPTAEVVQTSSHCCKHFGYNNSTPYMPHLSLLYANISDEKKQQAKEVANKLDEAIAGLSFPITRLALYKTDTGDETLKSWEKIAEHNLPS
        +HPT EVV+TSSHCC HFGY NSTPYMPHLSLLYANISDE+K+QAKE+A KLDEAI GLSFPITRLALYKTDTGDETLKSWEKIAE +LPS
Subjt:  VHPTAEVVQTSSHCCKHFGYNNSTPYMPHLSLLYANISDEKKQQAKEVANKLDEAIAGLSFPITRLALYKTDTGDETLKSWEKIAEHNLPS

XP_023543945.1 cyclic phosphodiesterase-like isoform X2 [Cucurbita pepo subsp. pepo]

4.5e-89

84.82

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Query:  MANPES-----CELEKNVYSVWALPPDDVSIRIKTLMEGLRSDFGGPQFEPHITVVGAIRLSLDDALDKFRSACEGLKAYQATVDCVSTGTFFYQCVFLL
        MANPES      E EKNVYSVWALPP+DV+ RI+TLM  LRS+FGGPQFEPHITVVGAIRL+LDDAL+KFRSACEGLKAYQATVDCVSTGTFFYQCVFLL
Subjt:  MANPES-----CELEKNVYSVWALPPDDVSIRIKTLMEGLRSDFGGPQFEPHITVVGAIRLSLDDALDKFRSACEGLKAYQATVDCVSTGTFFYQCVFLL

Query:  VHPTAEVVQTSSHCCKHFGYNNSTPYMPHLSLLYANISDEKKQQAKEVANKLDEAIAGLSFPITRLALYKTDTGDETLKSWEKIAEHNLPS
        +HPT +VV+TSSHCC HFGY NSTPYMPHLSLLYANISDE+K+QAKE+A KLDEAI GLSFPITRLALYKTDTGDETLKSWEKIAE +LPS
Subjt:  VHPTAEVVQTSSHCCKHFGYNNSTPYMPHLSLLYANISDEKKQQAKEVANKLDEAIAGLSFPITRLALYKTDTGDETLKSWEKIAEHNLPS

TrEMBL top hits

e value

%identity

Alignment

A0A1S3AYZ1 cyclic phosphodiesterase-like

4.9e-81

76.96

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Query:  MANPESC-----ELEKNVYSVWALPPDDVSIRIKTLMEGLRSDFGGPQFEPHITVVGAIRLSLDDALDKFRSACEGLKAYQATVDCVSTGTFFYQCVFLL
        M NPES      E E NVYSVWALPP+DVS RI+ LM  LRS+FGGPQFEPHITVVGAIRL+ +DAL+KF +AC+G+KAYQATVD VSTGTFFYQCVFLL
Subjt:  MANPESC-----ELEKNVYSVWALPPDDVSIRIKTLMEGLRSDFGGPQFEPHITVVGAIRLSLDDALDKFRSACEGLKAYQATVDCVSTGTFFYQCVFLL

Query:  VHPTAEVVQTSSHCCKHFGYNNSTPYMPHLSLLYANISDEKKQQAKEVANKLDEAIAGLSFPITRLALYKTDTGDETLKSWEKIAEHNLPS
        +HPT EVV+TSSH CKHFG+ NSTPYMPH+SLLYA+ISDEKK+QAKE+A+KLDEA+ GL FPITRLAL+KTDT DETLKSWEKI EH+L S
Subjt:  VHPTAEVVQTSSHCCKHFGYNNSTPYMPHLSLLYANISDEKKQQAKEVANKLDEAIAGLSFPITRLALYKTDTGDETLKSWEKIAEHNLPS

A0A6J1EEQ8 cyclic phosphodiesterase-like

5.4e-80

76.72

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Query:  MANPESCELEK---NVYSVWALPPDDVSIRIKTLMEGLRSDFGGPQFEPHITVVGAIRLSLDDALDKFRSACEGLKAYQATVDCVSTGTFFYQCVFLLVH
        MANP S  +E     +YSVWALPP+DV+ +I +LM  LRS+FGGP+FEPHITVVGAIRL+  DAL+KFRSACEG+KAYQATVD VS GT FYQCVFLL+H
Subjt:  MANPESCELEK---NVYSVWALPPDDVSIRIKTLMEGLRSDFGGPQFEPHITVVGAIRLSLDDALDKFRSACEGLKAYQATVDCVSTGTFFYQCVFLLVH

Query:  PTAEVVQTSSHCCKHFGYNNSTPYMPHLSLLYANISDEKKQQAKEVANKLDEAIAGLSFPITRLALYKTDTGDETLKSWEKIAEHNLPS
        PT EVVQ SSHCC HFGYNNSTPYMPHLSLLYANISDE K++AKE+A+KL+EA+ GL  P+TRLALYKTDTGDETLKSWEKIAEH+LPS
Subjt:  PTAEVVQTSSHCCKHFGYNNSTPYMPHLSLLYANISDEKKQQAKEVANKLDEAIAGLSFPITRLALYKTDTGDETLKSWEKIAEHNLPS

A0A6J1EGC1 cyclic phosphodiesterase-like

2.7e-87

84.29

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Query:  MANPES-----CELEKNVYSVWALPPDDVSIRIKTLMEGLRSDFGGPQFEPHITVVGAIRLSLDDALDKFRSACEGLKAYQATVDCVSTGTFFYQCVFLL
        MANPES      E EKNVYSVWALPP+DV  RI+TLM  LRS+FGGPQFEPHITVVGAIRL+LDDAL+KFRSACEGLKAYQATVDCVSTGTFFYQCVFLL
Subjt:  MANPES-----CELEKNVYSVWALPPDDVSIRIKTLMEGLRSDFGGPQFEPHITVVGAIRLSLDDALDKFRSACEGLKAYQATVDCVSTGTFFYQCVFLL

Query:  VHPTAEVVQTSSHCCKHFGYNNSTPYMPHLSLLYANISDEKKQQAKEVANKLDEAIAGLSFPITRLALYKTDTGDETLKSWEKIAEHNLPS
        +HPT +VV+TSSHCC HFGY N TPYMPHLSLLYANISDE+K+QAKE+A KLDEAI GLSFPITRLALYKTDTGDETLKSWEKIAE +LPS
Subjt:  VHPTAEVVQTSSHCCKHFGYNNSTPYMPHLSLLYANISDEKKQQAKEVANKLDEAIAGLSFPITRLALYKTDTGDETLKSWEKIAEHNLPS

A0A6J1INY2 cyclic phosphodiesterase-like

2.9e-89

84.29

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Query:  MANPES-----CELEKNVYSVWALPPDDVSIRIKTLMEGLRSDFGGPQFEPHITVVGAIRLSLDDALDKFRSACEGLKAYQATVDCVSTGTFFYQCVFLL
        MANPES      E EKNVYSVWALPP+DV+ RI+TLM  LRS+FGGPQFEPHITVVGAIRL+LDDAL+KFRSACEGLKAYQATVDCVSTGTFFYQCVFLL
Subjt:  MANPES-----CELEKNVYSVWALPPDDVSIRIKTLMEGLRSDFGGPQFEPHITVVGAIRLSLDDALDKFRSACEGLKAYQATVDCVSTGTFFYQCVFLL

Query:  VHPTAEVVQTSSHCCKHFGYNNSTPYMPHLSLLYANISDEKKQQAKEVANKLDEAIAGLSFPITRLALYKTDTGDETLKSWEKIAEHNLPS
        +HPT +VV+TSSHCC HFGY NSTPYMPHLSLLYANISDE+K+QAKE+A KLDEAI GLSFP+TRLALYKTDTGDETLKSWEKIAE +LPS
Subjt:  VHPTAEVVQTSSHCCKHFGYNNSTPYMPHLSLLYANISDEKKQQAKEVANKLDEAIAGLSFPITRLALYKTDTGDETLKSWEKIAEHNLPS

A0A6J1KNB2 cyclic phosphodiesterase-like

7.8e-79

76.19

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Query:  MANPESCELEK---NVYSVWALPPDDVSIRIKTLMEGLRSDFGGPQFEPHITVVGAIRLSLDDALDKFRSACEGLKAYQATVDCVSTGTFFYQCVFLLVH
        MANP S  +E     +YSVWALPP+DV+ +I +LM  LRS+FGGP+FEPHITVVGAIRL+  DAL+KFRSACEG+KAYQATVD VS GT FYQCVFLL+H
Subjt:  MANPESCELEK---NVYSVWALPPDDVSIRIKTLMEGLRSDFGGPQFEPHITVVGAIRLSLDDALDKFRSACEGLKAYQATVDCVSTGTFFYQCVFLLVH

Query:  PTAEVVQTSSHCCKHFGYNNSTPYMPHLSLLYANISDEKKQQAKEVANKLDEAIAGLSFPITRLALYKTDTGDETLKSWEKIAEHNLPS
        PT EVVQ SSHCC HFG NNSTPYMPHLSLLYANISDE K++AKE+A+KL+EA+ GL  P+TRLALYKTDTGDETLKSWEKIAEH+LPS
Subjt:  PTAEVVQTSSHCCKHFGYNNSTPYMPHLSLLYANISDEKKQQAKEVANKLDEAIAGLSFPITRLALYKTDTGDETLKSWEKIAEHNLPS

SwissProt top hits

e value

%identity

Alignment

O04147 Cyclic phosphodiesterase

5.8e-55

57.06

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Query:  ELEKNVYSVWALPPDDVSIRIKTLMEGLRSDFGGPQFEPHITVVGAIRLSLDDALDKFRSACEGLKAYQATVDCVSTGTFFYQCVFLLVHPTAEVVQTSS
        E++K+VYSVWALP ++   R K LME LRS+F GP+F PH+TV  +  L+ D+A   F SAC+GLKAY ATVD VSTGTFF+QCVFLL+  T EV++   
Subjt:  ELEKNVYSVWALPPDDVSIRIKTLMEGLRSDFGGPQFEPHITVVGAIRLSLDDALDKFRSACEGLKAYQATVDCVSTGTFFYQCVFLLVHPTAEVVQTSS

Query:  HCCKHFGYNNSTPYMPHLSLLYANISDEKKQQAKEVANKLDEAIAGLSFPITRLALYKTDTGDETLKSWEKIAEHNL
        HC  HF  + +TPYMPHLSLLYA +++E+K+ A+E A  LD ++ GLSF + RLAL KTDT D+TL++WE +A  NL
Subjt:  HCCKHFGYNNSTPYMPHLSLLYANISDEKKQQAKEVANKLDEAIAGLSFPITRLALYKTDTGDETLKSWEKIAEHNL

Arabidopsis top hits

e value

%identity

Alignment

AT4G18930.1 RNA ligase/cyclic nucleotide phosphodiesterase family protein

4.1e-56

57.06

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Query:  ELEKNVYSVWALPPDDVSIRIKTLMEGLRSDFGGPQFEPHITVVGAIRLSLDDALDKFRSACEGLKAYQATVDCVSTGTFFYQCVFLLVHPTAEVVQTSS
        E++K+VYSVWALP ++   R K LME LRS+F GP+F PH+TV  +  L+ D+A   F SAC+GLKAY ATVD VSTGTFF+QCVFLL+  T EV++   
Subjt:  ELEKNVYSVWALPPDDVSIRIKTLMEGLRSDFGGPQFEPHITVVGAIRLSLDDALDKFRSACEGLKAYQATVDCVSTGTFFYQCVFLLVHPTAEVVQTSS

Query:  HCCKHFGYNNSTPYMPHLSLLYANISDEKKQQAKEVANKLDEAIAGLSFPITRLALYKTDTGDETLKSWEKIAEHNL
        HC  HF  + +TPYMPHLSLLYA +++E+K+ A+E A  LD ++ GLSF + RLAL KTDT D+TL++WE +A  NL
Subjt:  HCCKHFGYNNSTPYMPHLSLLYANISDEKKQQAKEVANKLDEAIAGLSFPITRLALYKTDTGDETLKSWEKIAEHNL

AT4G18940.1 RNA ligase/cyclic nucleotide phosphodiesterase family protein

6.9e-43

45.11

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Query:  ESCELEKNVYSVWALPPDDVSIRIKTLMEGLRSDFGGPQFEPHITVVGAI--RLSLDDALDKFRSACEGLKAYQATVDCVSTGTFFYQCVFLLVHPTAEV
        E  E EK +Y++WA+P DDV  R++ LMEGLRS+FGGP F+PH+T+VG    +L+  +A   F+SACEG K Y ATVD VS GT ++QC+++ +  T EV
Subjt:  ESCELEKNVYSVWALPPDDVSIRIKTLMEGLRSDFGGPQFEPHITVVGAI--RLSLDDALDKFRSACEGLKAYQATVDCVSTGTFFYQCVFLLVHPTAEV

Query:  VQTSSHCCKHFGYNNSTPYMPHLSLLYANISDEKKQQAKEVANKLDEAIAGLSFPITRLALYKTDTGDETLKSWEKIAEHNLPS
        +  + H   HF       Y+PH+S+LY ++++ +K++A E A  LD ++ GL+F I R+AL+ TD     + SW K+ EH L S
Subjt:  VQTSSHCCKHFGYNNSTPYMPHLSLLYANISDEKKQQAKEVANKLDEAIAGLSFPITRLALYKTDTGDETLKSWEKIAEHNLPS

Sequences

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CDS sequence

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ATGGCAAATCCAGAATCCTGTGAATTGGAGAAGAATGTGTACTCTGTATGGGCTCTTCCTCCAGATGATGTCTCCATCAGGATCAAGACTCTGATGGAGGGCCTCCGATC
CGACTTCGGCGGCCCCCAATTCGAGCCCCATATCACCGTCGTCGGGGCCATCCGCCTCTCCCTCGACGATGCCCTCGACAAGTTCCGCTCGGCTTGCGAAGGGCTCAAGG
CGTATCAAGCCACTGTGGATTGTGTGTCTACTGGAACCTTCTTTTACCAGTGTGTTTTTCTCCTTGTTCATCCTACTGCTGAGGTGGTGCAGACTAGTTCCCATTGCTGT
AAACATTTTGGTTACAACAACTCTACCCCTTACATGCCCCATTTGAGTCTACTGTATGCCAACATATCAGATGAAAAAAAGCAGCAGGCAAAAGAAGTAGCGAACAAACT
CGATGAAGCCATTGCCGGCCTGAGCTTCCCAATCACTCGACTTGCACTGTACAAAACCGACACTGGGGATGAAACTCTAAAGTCCTGGGAGAAAATTGCAGAACACAATC
TTCCTTCATGTTAG

mRNA sequence

Show/hide mRNA sequence

CAGTAGCGTGGGCTTGTAACCCAAGTGGGGGCAATAAAGTGGTTGGAAGCTGGTTTGACTCAGCGGGTTGGGTTCTGGGAGTTGTTCTTCGGCTCGCCCGTTCCAAGTAG
GGATTGGCCTTTGGGTCCTGGGCGAAAGCCTGAGATACACTTGGCCCTAGAGATGGAGGACACCGCGTGAGGCTGGTTTCACAGAGCAGCGTTACCTCCCGGTCCTGTCG
GTGGAAGGATTACGGGCCGGTTTCTCCCGGGCCCATTCAAAATCCGCTGGGTAATTCTCAGCCTAACAACCACTTTTTTGTTCTGGTTTTTCCTGCCGCCAAACCGCACC
TTGGTCTGGATTGCATCAACCGGTCAACGAAATTTCCGGTTTGACGTAAAGTGGTTCATTTGGACCGGTTTGATTCAGGTTCTGTTGAGGGAATCAAAGTGTACTAGAAG
AATATGCCAAGCATTGCCGGTGAGATAGGATCAAGTTTAGTTTAGTTCAGTCAACGCCAACCCTTCAATCCCAATCAGAACGTTGATCACTGCCAATGGCAAATCCAGAA
TCCTGTGAATTGGAGAAGAATGTGTACTCTGTATGGGCTCTTCCTCCAGATGATGTCTCCATCAGGATCAAGACTCTGATGGAGGGCCTCCGATCCGACTTCGGCGGCCC
CCAATTCGAGCCCCATATCACCGTCGTCGGGGCCATCCGCCTCTCCCTCGACGATGCCCTCGACAAGTTCCGCTCGGCTTGCGAAGGGCTCAAGGCGTATCAAGCCACTG
TGGATTGTGTGTCTACTGGAACCTTCTTTTACCAGTGTGTTTTTCTCCTTGTTCATCCTACTGCTGAGGTGGTGCAGACTAGTTCCCATTGCTGTAAACATTTTGGTTAC
AACAACTCTACCCCTTACATGCCCCATTTGAGTCTACTGTATGCCAACATATCAGATGAAAAAAAGCAGCAGGCAAAAGAAGTAGCGAACAAACTCGATGAAGCCATTGC
CGGCCTGAGCTTCCCAATCACTCGACTTGCACTGTACAAAACCGACACTGGGGATGAAACTCTAAAGTCCTGGGAGAAAATTGCAGAACACAATCTTCCTTCATGTTAGC
TTCTGTTTTTATCCGTTATGTTACACCGTTATCCTGTTCTTCTATACAATGTCTGTACTCCTTTAGACTTCTTAACTACTGAAAAATAAATGTCAGCCAAACGATTTGTT
TGTTATATT

Protein sequence

Show/hide protein sequence

MANPESCELEKNVYSVWALPPDDVSIRIKTLMEGLRSDFGGPQFEPHITVVGAIRLSLDDALDKFRSACEGLKAYQATVDCVSTGTFFYQCVFLLVHPTAEVVQTSSHCC
KHFGYNNSTPYMPHLSLLYANISDEKKQQAKEVANKLDEAIAGLSFPITRLALYKTDTGDETLKSWEKIAEHNLPSC

Sed0013474 (gene) of Chayote v1 genome