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Sed0013492 (gene) of Chayote v1 genome

Gene IDSed0013492
OrganismSechium edule (Chayote v1)
Descriptionglycine-rich cell wall structural protein 2-like
Genome locationLG08:3663122..3665438
RNA-Seq ExpressionSed0013492
SyntenySed0013492
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6589746.1 hypothetical protein SDJN03_15169, partial [Cucurbita argyrosperma subsp. sororia]1.4e-2768.57Show/hide
Query:  MTPIKAIAVLCSVICMLTIESHGRIMRKDLGLNLGGIGIGIGIGLGLG-----GSGSGSGSGSGSGSGSSSSSSSSSHSSSSGNGGSEAGSYAGSYA---
        MT I+AIAVLC V+CM  IES GR+ RKDLGL+LGG+G+G+G+GLGLG     GSGSGSGSGSGSGSGS SSS SSS S      GSEAGSYAGSYA   
Subjt:  MTPIKAIAVLCSVICMLTIESHGRIMRKDLGLNLGGIGIGIGIGLGLG-----GSGSGSGSGSGSGSGSSSSSSSSSHSSSSGNGGSEAGSYAGSYA---

Query:  -GSGSGRNDRNGGSGSGSGYGEGSGQGSGGGGGSGEGRGYREGSGRGSGGGGGGGEGYGEGRGYGEGRCYREGGS
         GS SGRN RNG    GSGYGEGSG+G GGGGG G G GY EG G G    G G EGYGEGRGYGEGR Y EGG+
Subjt:  -GSGSGRNDRNGGSGSGSGYGEGSGQGSGGGGGSGEGRGYREGSGRGSGGGGGGGEGYGEGRGYGEGRCYREGGS

XP_022135257.1 glycine-rich cell wall structural protein 2-like [Momordica charantia]1.1e-1967.97Show/hide
Query:  MTPIKAIAVLCSVICMLTIESHGRIMRKDLGLNLGGIGIGIGIGLGL---GGSGSGSGSGSGSGSGSSSSSSSSSHSSSSGNGGSEAGSYAGSYA-----
        M  I+AIA +C V+C   IES  R+ RKDLGL+LGG+GIG+G G+GL   GGSGSG+G+GSGSGSGS S SSSSSHSSSS  GGS AGS AGSYA     
Subjt:  MTPIKAIAVLCSVICMLTIESHGRIMRKDLGLNLGGIGIGIGIGLGL---GGSGSGSGSGSGSGSGSSSSSSSSSHSSSSGNGGSEAGSYAGSYA-----

Query:  -GSGSGRNDRNGGSGSGSGYGEGSGQGSGGGGGSGEGRGYREGSGRGSGGGGG
         GSGSGRN RNGGSGSGSGYGEGSG+G+  G G GEG GY  G GRG GG GG
Subjt:  -GSGSGRNDRNGGSGSGSGYGEGSGQGSGGGGGSGEGRGYREGSGRGSGGGGG

XP_022921883.1 putative glycine-rich cell wall structural protein 1 isoform X3 [Cucurbita moschata]1.1e-1968.46Show/hide
Query:  MTPIKAIAVLCSVICMLTIESHGRIMRKDLGLNLGGIGIGIGIGLGLG----GSGSGSGSGSGSGSGSSSSSSSSSHSSSSGNG---GSEAGSYAGSYAG
        M  I ++ V+C ++    I S  R+ RKDLGL+LGG+G+GIG G+GLG    GSGSGSGSGSGSGSGSSSSSSSSS+SSSSG+G   GSEAGSYAGS AG
Subjt:  MTPIKAIAVLCSVICMLTIESHGRIMRKDLGLNLGGIGIGIGIGLGLG----GSGSGSGSGSGSGSGSSSSSSSSSHSSSSGNG---GSEAGSYAGSYAG

Query:  SGSGRNDRNGGSGSGSGYGEGSGQGSGGGGGSGEGRGYREGSGRGSGGG
        SGSG N RNGGSGSGSGYG GSG+GSG GGG G G G+  G GRG GGG
Subjt:  SGSGRNDRNGGSGSGSGYGEGSGQGSGGGGGSGEGRGYREGSGRGSGGG

XP_023515819.1 putative glycine-rich cell wall structural protein 1 isoform X3 [Cucurbita pepo subsp. pepo]6.3e-2068.46Show/hide
Query:  MTPIKAIAVLCSVICMLTIESHGRIMRKDLGLNLGGIGIGIGIGLGLG----GSGSGSGSGSGSGSGSSSSSSSSSHSSSSGNG---GSEAGSYAGSYAG
        M  I ++ V+C ++    I S  R+ RKDLGL+LGG+G+GIG G+GLG    GSGSGSGSGSGSGSGSSSSSSSSS+SSSSG+G   GSEAGSYAGS AG
Subjt:  MTPIKAIAVLCSVICMLTIESHGRIMRKDLGLNLGGIGIGIGIGLGLG----GSGSGSGSGSGSGSGSSSSSSSSSHSSSSGNG---GSEAGSYAGSYAG

Query:  SGSGRNDRNGGSGSGSGYGEGSGQGSGGGGGSGEGRGYREGSGRGSGGG
        S SGRN RNGGSGSGSGYG GSG+GSG GGG G G G+  G GRG GGG
Subjt:  SGSGRNDRNGGSGSGSGYGEGSGQGSGGGGGSGEGRGYREGSGRGSGGG

XP_023515820.1 putative glycine-rich cell wall structural protein 1 [Cucurbita pepo subsp. pepo]5.1e-2267.07Show/hide
Query:  MTPIKAIAVLCSVICMLTIESHGRIMRKDLGLNLGGIGIGIGIGLGLG-GSGSGSGSGSGSGSGSSSSSSSSSHSSSSGNGGSEAGSYAGSYAGSGSGRN
        MT I++IAVLC V+CM  IES GR+ RKDLGL+LGG+G+G+G+GLGLG G GSGSGSGSGSGSGS S S SSS SSSS  GGS AGS AGSYAGS +G  
Subjt:  MTPIKAIAVLCSVICMLTIESHGRIMRKDLGLNLGGIGIGIGIGLGLG-GSGSGSGSGSGSGSGSSSSSSSSSHSSSSGNGGSEAGSYAGSYAGSGSGRN

Query:  DRNGGSGSGSGYGEGSGQGSGGGGGSGEGRGYREGSGRGSGGGGGGGEGYGEGRGYGEGRCYREGGS
           GGS SG  Y  G G G GGGGG G G GY EG G G    G G EGYGEGRGYGEGR Y EGG+
Subjt:  DRNGGSGSGSGYGEGSGQGSGGGGGSGEGRGYREGSGRGSGGGGGGGEGYGEGRGYGEGRCYREGGS

TrEMBL top hitse value%identityAlignment
A0A6J1C269 glycine-rich cell wall structural protein 2-like5.2e-2067.97Show/hide
Query:  MTPIKAIAVLCSVICMLTIESHGRIMRKDLGLNLGGIGIGIGIGLGL---GGSGSGSGSGSGSGSGSSSSSSSSSHSSSSGNGGSEAGSYAGSYA-----
        M  I+AIA +C V+C   IES  R+ RKDLGL+LGG+GIG+G G+GL   GGSGSG+G+GSGSGSGS S SSSSSHSSSS  GGS AGS AGSYA     
Subjt:  MTPIKAIAVLCSVICMLTIESHGRIMRKDLGLNLGGIGIGIGIGLGL---GGSGSGSGSGSGSGSGSSSSSSSSSHSSSSGNGGSEAGSYAGSYA-----

Query:  -GSGSGRNDRNGGSGSGSGYGEGSGQGSGGGGGSGEGRGYREGSGRGSGGGGG
         GSGSGRN RNGGSGSGSGYGEGSG+G+  G G GEG GY  G GRG GG GG
Subjt:  -GSGSGRNDRNGGSGSGSGYGEGSGQGSGGGGGSGEGRGYREGSGRGSGGGGG

A0A6J1E1T0 glycine-rich cell wall structural protein 2-like1.5e-1967.81Show/hide
Query:  MTPIKAIAVLCSVICMLTIESHGRIMRKDLGLNLGGIGIGI--GIGLGLGGSGSGSGSGSGSGSGSSSSSSSSSHSSSSGNG---GSEAGSYAGSYAGSG
        M  I+A+++L  ++ +  I S  R+ R DLGL+LGG+G+GI  G+GLGLGGSGSGSGSGSGSGSGS SSS+SSSHSSSS +G   GSEAGSYAGSYAGSG
Subjt:  MTPIKAIAVLCSVICMLTIESHGRIMRKDLGLNLGGIGIGI--GIGLGLGGSGSGSGSGSGSGSGSSSSSSSSSHSSSSGNG---GSEAGSYAGSYAGSG

Query:  SGRNDRNGGSGSGSGYGEGSGQGSGGGGGSGEGRGYREGSGRGSGG
        SGRN RNGGSGSGSG G G G GSG G GSG G GY EG G G+ G
Subjt:  SGRNDRNGGSGSGSGYGEGSGQGSGGGGGSGEGRGYREGSGRGSGG

A0A6J1E2L1 cell wall protein IFF6-like isoform X18.3e-1863.16Show/hide
Query:  MTPIKAIAVLCSVICMLTIESHGRIMRKDLGLNLGGIGIGIGIGLGLG----GSGSGSGSGSGSGSGSSSSSSSSSHSSSSGNG---GSEAGSYAGSYAG
        M  I ++ V+C ++    I S  R+ RKDLGL+LGG+G+GIG G+GLG    GSGSGSGSGSGSGSGSSSSSSSSS+SSSSG+G   GSEAGSYAGS AG
Subjt:  MTPIKAIAVLCSVICMLTIESHGRIMRKDLGLNLGGIGIGIGIGLGLG----GSGSGSGSGSGSGSGSSSSSSSSSHSSSSGNG---GSEAGSYAGSYAG

Query:  SGSGRNDRNGGSGSGSGYGEGSGQGSGGGGGSGEGRGYREGSGRGSGGGGGGGEGYGEGRGYGEGRCYREG
        SGSG +     +GS +G   GSG G    GGSG G GY  GSGRGS  G GGGEGYGEG GYGEGR Y  G
Subjt:  SGSGRNDRNGGSGSGSGYGEGSGQGSGGGGGSGEGRGYREGSGRGSGGGGGGGEGYGEGRGYGEGRCYREG

A0A6J1E521 putative glycine-rich cell wall structural protein 1 isoform X35.2e-2068.46Show/hide
Query:  MTPIKAIAVLCSVICMLTIESHGRIMRKDLGLNLGGIGIGIGIGLGLG----GSGSGSGSGSGSGSGSSSSSSSSSHSSSSGNG---GSEAGSYAGSYAG
        M  I ++ V+C ++    I S  R+ RKDLGL+LGG+G+GIG G+GLG    GSGSGSGSGSGSGSGSSSSSSSSS+SSSSG+G   GSEAGSYAGS AG
Subjt:  MTPIKAIAVLCSVICMLTIESHGRIMRKDLGLNLGGIGIGIGIGLGLG----GSGSGSGSGSGSGSGSSSSSSSSSHSSSSGNG---GSEAGSYAGSYAG

Query:  SGSGRNDRNGGSGSGSGYGEGSGQGSGGGGGSGEGRGYREGSGRGSGGG
        SGSG N RNGGSGSGSGYG GSG+GSG GGG G G G+  G GRG GGG
Subjt:  SGSGRNDRNGGSGSGSGYGEGSGQGSGGGGGSGEGRGYREGSGRGSGGG

F6HS59 Uncharacterized protein6.3e-1862.28Show/hide
Query:  MTPIKAIAVLCSVICMLTIESHGRIMRKDLGLNLGGIGI--GIGIGLGLGGSGSGSGSGSGSGSGSSSSSSSSSHSSS-SGNG-GSEAGSYAGSY----A
        M  ++++A++  ++    + S  R+ RKDLGL+LGG+G+  G+G+GLGLGGSGSGSGSGSGSGSGS +SS + S SSS SG+G GSEAGSYAGSY    A
Subjt:  MTPIKAIAVLCSVICMLTIESHGRIMRKDLGLNLGGIGI--GIGIGLGLGGSGSGSGSGSGSGSGSSSSSSSSSHSSS-SGNG-GSEAGSYAGSY----A

Query:  GSGSGRND-RNGGSGSGSGYGEGSGQGSGGGGGSGEGRGYREGSGRGSGGGGGGGEGYGEGRGYGEG
        GSGSG N  R  GSGSG G+G+GSG GSG G GSG G GY EGSGRGS  G G G G+GEG GYGEG
Subjt:  GSGSGRND-RNGGSGSGSGYGEGSGQGSGGGGGSGEGRGYREGSGRGSGGGGGGGEGYGEGRGYGEG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT4G30460.1 glycine-rich protein3.1e-1760.51Show/hide
Query:  AIAVLCSVICMLTIESHGRIMRKDLGLNLGGIGIGIGIGLGLGGSGSGSGSGSGSGSG----SSSSSSSSSHSSSSGNGGSEAGSYAGSYAGSGSGRNDR
        ++ ++  ++    + S  R+ RKDLGL+LGGIG GIGIG+G+GG GSGSG+G+GSGSG    SSSSSSSSS SSSSG GG +AGS AGSYAGS       
Subjt:  AIAVLCSVICMLTIESHGRIMRKDLGLNLGGIGIGIGIGLGLGGSGSGSGSGSGSGSG----SSSSSSSSSHSSSSGNGGSEAGSYAGSYAGSGSGRNDR

Query:  NGGSGSGSGYGEGSGQGSGGGGGSGEGRGYREGSGRGSGGGGGGGEGYGEGRGYGEG
        + GSGSG   G G G+GSGGGGG G G G   G GRG GGG G GEGYGEG GYG G
Subjt:  NGGSGSGSGYGEGSGQGSGGGGGSGEGRGYREGSGRGSGGGGGGGEGYGEGRGYGEG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACCCCCATCAAAGCTATTGCTGTTCTATGTTCAGTAATCTGCATGTTAACGATTGAATCACATGGAAGAATCATGAGGAAGGACTTGGGCCTTAATCTTGGAGGTAT
AGGAATTGGTATTGGTATAGGCCTTGGCTTAGGCGGAAGTGGGTCGGGTTCTGGGTCCGGGTCTGGATCCGGTTCAGGTTCATCATCGTCATCGTCATCGTCATCACACT
CGTCAAGCTCGGGTAATGGAGGCTCTGAAGCTGGCTCCTATGCTGGATCTTACGCGGGGTCAGGTTCAGGAAGGAATGATAGGAATGGTGGTTCGGGTTCAGGTTCGGGA
TACGGTGAGGGCTCCGGTCAGGGAAGCGGTGGAGGAGGTGGTTCTGGGGAGGGACGTGGCTACAGGGAAGGTTCCGGCAGAGGAAGCGGTGGCGGCGGTGGCGGAGGAGA
AGGTTATGGCGAGGGTCGTGGCTATGGCGAGGGACGTTGTTACCGCGAAGGTGGCTCTTATGCTGGGTCTCGAGCGGGTTCTGGATCGGGTGGTAGTGGAGGTGGAGGGT
CGGGCTACGGTCGAGGATACGGATCGGGTTATGGAGGAGGGCATGGAAAATGA
mRNA sequenceShow/hide mRNA sequence
GTTGAGATTTGAGTCCATATCAGAAAATGACCCCCATCAAAGCTATTGCTGTTCTATGTTCAGTAATCTGCATGTTAACGATTGAATCACATGGAAGAATCATGAGGAAG
GACTTGGGCCTTAATCTTGGAGGTATAGGAATTGGTATTGGTATAGGCCTTGGCTTAGGCGGAAGTGGGTCGGGTTCTGGGTCCGGGTCTGGATCCGGTTCAGGTTCATC
ATCGTCATCGTCATCGTCATCACACTCGTCAAGCTCGGGTAATGGAGGCTCTGAAGCTGGCTCCTATGCTGGATCTTACGCGGGGTCAGGTTCAGGAAGGAATGATAGGA
ATGGTGGTTCGGGTTCAGGTTCGGGATACGGTGAGGGCTCCGGTCAGGGAAGCGGTGGAGGAGGTGGTTCTGGGGAGGGACGTGGCTACAGGGAAGGTTCCGGCAGAGGA
AGCGGTGGCGGCGGTGGCGGAGGAGAAGGTTATGGCGAGGGTCGTGGCTATGGCGAGGGACGTTGTTACCGCGAAGGTGGCTCTTATGCTGGGTCTCGAGCGGGTTCTGG
ATCGGGTGGTAGTGGAGGTGGAGGGTCGGGCTACGGTCGAGGATACGGATCGGGTTATGGAGGAGGGCATGGAAAATGA
Protein sequenceShow/hide protein sequence
MTPIKAIAVLCSVICMLTIESHGRIMRKDLGLNLGGIGIGIGIGLGLGGSGSGSGSGSGSGSGSSSSSSSSSHSSSSGNGGSEAGSYAGSYAGSGSGRNDRNGGSGSGSG
YGEGSGQGSGGGGGSGEGRGYREGSGRGSGGGGGGGEGYGEGRGYGEGRCYREGGSYAGSRAGSGSGGSGGGGSGYGRGYGSGYGGGHGK