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Sed0013496 (gene) of Chayote v1 genome

Gene IDSed0013496
OrganismSechium edule (Chayote v1)
DescriptionE3 ubiquitin-protein ligase MIEL1-like
Genome locationLG07:2793472..2794166
RNA-Seq ExpressionSed0013496
SyntenySed0013496
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0046715.1 E3 ubiquitin-protein ligase MIEL1-like [Cucumis melo var. makuwa]6.6e-0847.01Show/hide
Query:  MVSTKSLVSIAFIALLFFSESLATTSAAGCGGDSKSLTGNPRRNILQTAAH-------ESSLDGKMN-VHVKRVRFTRPV-TTGTTG--RRSAANRSSVP
        M + + LVSIA +ALLFFSESL T         S SLTG P RNIL T AH       ESS   K N +H K  R  RP+  +G+ G   +SA NRS V 
Subjt:  MVSTKSLVSIAFIALLFFSESLATTSAAGCGGDSKSLTGNPRRNILQTAAH-------ESSLDGKMN-VHVKRVRFTRPV-TTGTTG--RRSAANRSSVP

Query:  ASGVGSVLSLFVFLGFF
        +  VGS+L + +FLG F
Subjt:  ASGVGSVLSLFVFLGFF

KAA0068047.1 protein no-on-transient A-like [Cucumis melo var. makuwa]2.0e-1256.31Show/hide
Query:  MVSTKSLVSIAFIALLFFSESLATTSAAGCGGDSKSLTGNPRRNILQTAAHE-SSLDGKMNVHVKR--VRFTRPVTTGT--TG-RRSAANRSSVPASGVG
        M + KSL+ I+ +ALLFFSESL +TSAA C G S S+TG  RRN+LQTA HE +  +GKMNVH+KR      RPV  GT  TG R+SAA+RS V + G+G
Subjt:  MVSTKSLVSIAFIALLFFSESLATTSAAGCGGDSKSLTGNPRRNILQTAAHE-SSLDGKMNVHVKR--VRFTRPVTTGT--TG-RRSAANRSSVPASGVG

Query:  SVL
         +L
Subjt:  SVL

KAG6575859.1 hypothetical protein SDJN03_26498, partial [Cucurbita argyrosperma subsp. sororia]5.5e-1559.29Show/hide
Query:  MVSTKSLVSIAFIALLFFSESLATTSAAGCGGDSKSLTGNPRRNILQTAAH-------ESSLDGKMNVHVKRVRFTRPVTTGTTGRRSAANRSSVPASGV
        M + KSLVS+A +ALL FSESL T SA    GDS SLTG  RRN+LQTAAH       ESS + KMNVH+K  R  RPV TGT  R SAANRS + + GV
Subjt:  MVSTKSLVSIAFIALLFFSESLATTSAAGCGGDSKSLTGNPRRNILQTAAH-------ESSLDGKMNVHVKRVRFTRPVTTGTTGRRSAANRSSVPASGV

Query:  GSVLSLFVFLGFF
        GSVL   V LG F
Subjt:  GSVLSLFVFLGFF

KAG6593163.1 hypothetical protein SDJN03_12639, partial [Cucurbita argyrosperma subsp. sororia]2.4e-1053.27Show/hide
Query:  MVSTKSLVSIAFIALLFFSESLATTSAAGCGGDSKSLTGNPRRNILQTAA-HESSLDGKMNVHVKRVRFTRPVTTGTTGRRSAANRSSVPASGVGSVLSL
        M + K+L+SIA IALL F ESL  TSAA   G S SL G  RRNI+QT A H    + K NVH+KR    RPV  G   + SAANRS     GVGS+L +
Subjt:  MVSTKSLVSIAFIALLFFSESLATTSAAGCGGDSKSLTGNPRRNILQTAA-HESSLDGKMNVHVKRVRFTRPVTTGTTGRRSAANRSSVPASGVGSVLSL

Query:  FVFLGFF
        FV LG F
Subjt:  FVFLGFF

KGN44886.1 hypothetical protein Csa_015765 [Cucumis sativus]2.0e-1255.66Show/hide
Query:  MVSTKSLVSIAFIALLFFSESLATTSAAGCGGDSKSLTGNPRRNILQTAAHE-SSLDGKMNVHVKR---VRFTRPV--TTGTTGRRSAANRSSVPASGVG
        M + KSL+SI+ +ALLFFSESL +TSAA C G S S+T   RRNILQTA HE +  +GKMNV +K+    RF RP+   TGT  R SAANRS V + G+G
Subjt:  MVSTKSLVSIAFIALLFFSESLATTSAAGCGGDSKSLTGNPRRNILQTAAHE-SSLDGKMNVHVKR---VRFTRPV--TTGTTGRRSAANRSSVPASGVG

Query:  SVLSLF
         +L  F
Subjt:  SVLSLF

TrEMBL top hitse value%identityAlignment
A0A0A0K929 Uncharacterized protein2.5e-0541.46Show/hide
Query:  MVSTKSLVSIAFIALLFFSESLATTSAAGCGGDSKSLTGNPRRNILQTAAHESSLDGKM-----------NVHVKRVRFTR--PVTTGTTG---RRSAAN
        M + + L+SIAF+AL FFSESL T         S SLTG P R IL TAAH   +DG +            +H+K +R  R  P+   ++     +SAAN
Subjt:  MVSTKSLVSIAFIALLFFSESLATTSAAGCGGDSKSLTGNPRRNILQTAAHESSLDGKM-----------NVHVKRVRFTR--PVTTGTTG---RRSAAN

Query:  RSSVPAS-GVGSVLSLFVFLGFF
        R S  AS  VGS+L + +FLG F
Subjt:  RSSVPAS-GVGSVLSLFVFLGFF

A0A0A0KAQ7 Uncharacterized protein9.5e-1355.66Show/hide
Query:  MVSTKSLVSIAFIALLFFSESLATTSAAGCGGDSKSLTGNPRRNILQTAAHE-SSLDGKMNVHVKR---VRFTRPV--TTGTTGRRSAANRSSVPASGVG
        M + KSL+SI+ +ALLFFSESL +TSAA C G S S+T   RRNILQTA HE +  +GKMNV +K+    RF RP+   TGT  R SAANRS V + G+G
Subjt:  MVSTKSLVSIAFIALLFFSESLATTSAAGCGGDSKSLTGNPRRNILQTAAHE-SSLDGKMNVHVKR---VRFTRPV--TTGTTGRRSAANRSSVPASGVG

Query:  SVLSLF
         +L  F
Subjt:  SVLSLF

A0A1S3BT53 E3 ubiquitin-protein ligase MIEL1-like2.1e-0447.47Show/hide
Query:  MVSTKSLVSIAFIALLFFSESLATTSAAGCGGDSKSLTGNPRRNILQTAAH-------ESSLDGKMN-VHVKRVRFTRPV-TTGTTG--RRSAANRSSV
        M + + LVSIA +ALLFFSESL T         S SLTG P RNIL T AH       ESS   K N +H K  R  RP+  +G+ G   +SA NRS V
Subjt:  MVSTKSLVSIAFIALLFFSESLATTSAAGCGGDSKSLTGNPRRNILQTAAH-------ESSLDGKMN-VHVKRVRFTRPV-TTGTTG--RRSAANRSSV

A0A5A7VLE5 Protein no-on-transient A-like9.5e-1356.31Show/hide
Query:  MVSTKSLVSIAFIALLFFSESLATTSAAGCGGDSKSLTGNPRRNILQTAAHE-SSLDGKMNVHVKR--VRFTRPVTTGT--TG-RRSAANRSSVPASGVG
        M + KSL+ I+ +ALLFFSESL +TSAA C G S S+TG  RRN+LQTA HE +  +GKMNVH+KR      RPV  GT  TG R+SAA+RS V + G+G
Subjt:  MVSTKSLVSIAFIALLFFSESLATTSAAGCGGDSKSLTGNPRRNILQTAAHE-SSLDGKMNVHVKR--VRFTRPVTTGT--TG-RRSAANRSSVPASGVG

Query:  SVL
         +L
Subjt:  SVL

A0A5D3D3Y6 E3 ubiquitin-protein ligase MIEL1-like3.2e-0847.01Show/hide
Query:  MVSTKSLVSIAFIALLFFSESLATTSAAGCGGDSKSLTGNPRRNILQTAAH-------ESSLDGKMN-VHVKRVRFTRPV-TTGTTG--RRSAANRSSVP
        M + + LVSIA +ALLFFSESL T         S SLTG P RNIL T AH       ESS   K N +H K  R  RP+  +G+ G   +SA NRS V 
Subjt:  MVSTKSLVSIAFIALLFFSESLATTSAAGCGGDSKSLTGNPRRNILQTAAH-------ESSLDGKMN-VHVKRVRFTRPV-TTGTTG--RRSAANRSSVP

Query:  ASGVGSVLSLFVFLGFF
        +  VGS+L + +FLG F
Subjt:  ASGVGSVLSLFVFLGFF

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTTTCCACCAAATCCCTCGTTTCCATAGCTTTCATCGCTCTTCTCTTCTTCTCCGAATCCCTCGCCACCACTTCTGCCGCCGGCTGCGGCGGCGATTCCAAGTCCCT
CACCGGAAATCCCCGTCGGAACATTCTTCAGACGGCGGCGCATGAGTCGAGCTTGGATGGGAAGATGAATGTTCATGTAAAAAGGGTGCGGTTTACTCGACCTGTGACTA
CTGGCACTACCGGCCGTAGATCGGCGGCCAATCGGAGCTCAGTGCCGGCTTCTGGCGTTGGATCTGTGCTCTCTCTCTTCGTTTTTCTCGGATTCTTCTTCTGA
mRNA sequenceShow/hide mRNA sequence
AGCGAACGTAACCGCGTAACCGCATCATTTGAAAGTTATAATATATCGAATTTAGAACCGCCTTTATAGAAAACGTAGGAATCGTCAAACACGTATTCCAAAGGCAAATT
CTAAGCATCTTCTCTCTCTATATAATCCCAATCCATTATATATCATTTCCTTTCTTTCATTCCCTTATTTATCTTTTCACCACCAAATCGCTCCGATTATTAATGGTTTC
CACCAAATCCCTCGTTTCCATAGCTTTCATCGCTCTTCTCTTCTTCTCCGAATCCCTCGCCACCACTTCTGCCGCCGGCTGCGGCGGCGATTCCAAGTCCCTCACCGGAA
ATCCCCGTCGGAACATTCTTCAGACGGCGGCGCATGAGTCGAGCTTGGATGGGAAGATGAATGTTCATGTAAAAAGGGTGCGGTTTACTCGACCTGTGACTACTGGCACT
ACCGGCCGTAGATCGGCGGCCAATCGGAGCTCAGTGCCGGCTTCTGGCGTTGGATCTGTGCTCTCTCTCTTCGTTTTTCTCGGATTCTTCTTCTGATTTTTTTTTTTTTA
ATTTTTGTGAAAATTTGGGGTTGTTATTAATTAAGGCTGTAATATTGTTTCATAAGATCATGATACCATTTTCATTCATTCACTTCTAGATTGACGATTGTCATTGAGTA
ATCACTATTATTTAATCTTAACTCTCTTTTTGGAA
Protein sequenceShow/hide protein sequence
MVSTKSLVSIAFIALLFFSESLATTSAAGCGGDSKSLTGNPRRNILQTAAHESSLDGKMNVHVKRVRFTRPVTTGTTGRRSAANRSSVPASGVGSVLSLFVFLGFFF