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Sed0013507 (gene) of Chayote v1 genome

Gene IDSed0013507
OrganismSechium edule (Chayote v1)
DescriptionTy3-gypsy retrotransposon protein
Genome locationLG05:22077004..22077255
RNA-Seq ExpressionSed0013507
SyntenySed0013507
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0035315.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]2.9e-1152.38Show/hide
Query:  MSVMMAG-DGGDDRMAEFERKLEQMMKTIEERDLEITYLKNQMQNRETAESSHSLHERVNDKGKNPLFEAQQLHSTSVASLSVQ
        MSVM+   D  ++RMAE E+K+  +MK +EERD EI +LKN +++R+TAESSH    +  DKGK  + E+Q  +STS+ASLSVQ
Subjt:  MSVMMAG-DGGDDRMAEFERKLEQMMKTIEERDLEITYLKNQMQNRETAESSHSLHERVNDKGKNPLFEAQQLHSTSVASLSVQ

TYK14321.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]2.9e-1152.38Show/hide
Query:  MSVMMAG-DGGDDRMAEFERKLEQMMKTIEERDLEITYLKNQMQNRETAESSHSLHERVNDKGKNPLFEAQQLHSTSVASLSVQ
        MSVM+   D  ++RMAE E+K+  +MK +EERD EI +LKN +++R+TAESSH    +  DKGK  + E+Q  +STS+ASLSVQ
Subjt:  MSVMMAG-DGGDDRMAEFERKLEQMMKTIEERDLEITYLKNQMQNRETAESSHSLHERVNDKGKNPLFEAQQLHSTSVASLSVQ

XP_031739134.1 uncharacterized protein LOC116402863 [Cucumis sativus]3.8e-1159.52Show/hide
Query:  MSVMMAGDGGDDRMAEFERKLEQMMKTIEERDLEITYLKNQMQNRETAESSHSLHERVNDKGKNPLFEAQ-QLHSTSVASLSVQ
        MSVMMA    +  MAE ERK+  +MK ++ERD EI  LK QMQ RETAESS +   +V+DKGKN + E Q Q  STSVASLSVQ
Subjt:  MSVMMAGDGGDDRMAEFERKLEQMMKTIEERDLEITYLKNQMQNRETAESSHSLHERVNDKGKNPLFEAQ-QLHSTSVASLSVQ

XP_031742032.1 uncharacterized protein LOC116404025 [Cucumis sativus]3.8e-1159.52Show/hide
Query:  MSVMMAGDGGDDRMAEFERKLEQMMKTIEERDLEITYLKNQMQNRETAESSHSLHERVNDKGKNPLFEAQ-QLHSTSVASLSVQ
        MSVMMA    +  MAE ERK+  +MK ++ERD EI  LK QMQ RETAESS +   +V+DKGKN + E Q Q  STSVASLSVQ
Subjt:  MSVMMAGDGGDDRMAEFERKLEQMMKTIEERDLEITYLKNQMQNRETAESSHSLHERVNDKGKNPLFEAQ-QLHSTSVASLSVQ

XP_031742199.1 uncharacterized protein LOC105435721 [Cucumis sativus]3.8e-1159.52Show/hide
Query:  MSVMMAGDGGDDRMAEFERKLEQMMKTIEERDLEITYLKNQMQNRETAESSHSLHERVNDKGKNPLFEAQ-QLHSTSVASLSVQ
        MSVMMA    +  MAE ERK+  +MK ++ERD EI  LK QMQ RETAESS +   +V+DKGKN + E Q Q  STSVASLSVQ
Subjt:  MSVMMAGDGGDDRMAEFERKLEQMMKTIEERDLEITYLKNQMQNRETAESSHSLHERVNDKGKNPLFEAQ-QLHSTSVASLSVQ

TrEMBL top hitse value%identityAlignment
A0A5A7STX4 Ty3-gypsy retrotransposon protein5.3e-1151.19Show/hide
Query:  MSVMMAG-DGGDDRMAEFERKLEQMMKTIEERDLEITYLKNQMQNRETAESSHSLHERVNDKGKNPLFEAQQLHSTSVASLSVQ
        MSVM+   D  ++RMAE E+K+  +MK +EERD EI +LKN +++ +TAESSH    +  DKGK  + E+Q  +STS+ASLSVQ
Subjt:  MSVMMAG-DGGDDRMAEFERKLEQMMKTIEERDLEITYLKNQMQNRETAESSHSLHERVNDKGKNPLFEAQQLHSTSVASLSVQ

A0A5A7T1J1 Ty3-gypsy retrotransposon protein1.4e-1152.38Show/hide
Query:  MSVMMAG-DGGDDRMAEFERKLEQMMKTIEERDLEITYLKNQMQNRETAESSHSLHERVNDKGKNPLFEAQQLHSTSVASLSVQ
        MSVM+   D  ++RMAE E+K+  +MK +EERD EI +LKN +++R+TAESSH    +  DKGK  + E+Q  +STS+ASLSVQ
Subjt:  MSVMMAG-DGGDDRMAEFERKLEQMMKTIEERDLEITYLKNQMQNRETAESSHSLHERVNDKGKNPLFEAQQLHSTSVASLSVQ

A0A5A7VAV4 Retrotransposon gag protein1.8e-1152.38Show/hide
Query:  MSVMMAG-DGGDDRMAEFERKLEQMMKTIEERDLEITYLKNQMQNRETAESSHSLHERVNDKGKNPLFEAQQLHSTSVASLSVQ
        MSVM+A  D  ++RMAE E+K+  +MK +EERD EI +LKN +++R+ AESSH    +  DKGK  + E+Q  +STS+ASLSVQ
Subjt:  MSVMMAG-DGGDDRMAEFERKLEQMMKTIEERDLEITYLKNQMQNRETAESSHSLHERVNDKGKNPLFEAQQLHSTSVASLSVQ

A0A5D3CRB1 Ty3-gypsy retrotransposon protein1.4e-1152.38Show/hide
Query:  MSVMMAG-DGGDDRMAEFERKLEQMMKTIEERDLEITYLKNQMQNRETAESSHSLHERVNDKGKNPLFEAQQLHSTSVASLSVQ
        MSVM+   D  ++RMAE E+K+  +MK +EERD EI +LKN +++R+TAESSH    +  DKGK  + E+Q  +STS+ASLSVQ
Subjt:  MSVMMAG-DGGDDRMAEFERKLEQMMKTIEERDLEITYLKNQMQNRETAESSHSLHERVNDKGKNPLFEAQQLHSTSVASLSVQ

A0A5D3D4X3 Ty3-gypsy retrotransposon protein1.8e-1152.38Show/hide
Query:  MSVMMAG-DGGDDRMAEFERKLEQMMKTIEERDLEITYLKNQMQNRETAESSHSLHERVNDKGKNPLFEAQQLHSTSVASLSVQ
        MSVM+   D  +DRMAE E+K+  +MK +EERD EI +LKN +++R+ AESSH    +  DKGK  + E+Q  +STS+ASLSVQ
Subjt:  MSVMMAG-DGGDDRMAEFERKLEQMMKTIEERDLEITYLKNQMQNRETAESSHSLHERVNDKGKNPLFEAQQLHSTSVASLSVQ

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCTGTTATGATGGCTGGTGATGGAGGCGATGATCGAATGGCAGAGTTTGAAAGAAAGCTCGAGCAGATGATGAAAACAATTGAGGAAAGAGACTTAGAAATCACTTA
CCTCAAAAATCAAATGCAGAACAGAGAGACGGCTGAATCAAGCCATAGTCTACATGAGAGAGTTAATGATAAAGGAAAGAACCCTCTCTTTGAAGCACAACAACTACACT
CAACCTCAGTTGCTTCCTTGTCTGTCCAATAG
mRNA sequenceShow/hide mRNA sequence
ATGTCTGTTATGATGGCTGGTGATGGAGGCGATGATCGAATGGCAGAGTTTGAAAGAAAGCTCGAGCAGATGATGAAAACAATTGAGGAAAGAGACTTAGAAATCACTTA
CCTCAAAAATCAAATGCAGAACAGAGAGACGGCTGAATCAAGCCATAGTCTACATGAGAGAGTTAATGATAAAGGAAAGAACCCTCTCTTTGAAGCACAACAACTACACT
CAACCTCAGTTGCTTCCTTGTCTGTCCAATAG
Protein sequenceShow/hide protein sequence
MSVMMAGDGGDDRMAEFERKLEQMMKTIEERDLEITYLKNQMQNRETAESSHSLHERVNDKGKNPLFEAQQLHSTSVASLSVQ