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Sed0013528 (gene) of Chayote v1 genome

Gene IDSed0013528
OrganismSechium edule (Chayote v1)
DescriptionUnknown protein
Genome locationLG05:26845590..26846238
RNA-Seq ExpressionSed0013528
SyntenySed0013528
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR036397 - Ribonuclease H superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_015380967.1 uncharacterized protein LOC107174511 [Citrus sinensis]2.7e-0427.05Show/hide
Query:  ASMNSLWKPPRLGTYKLNIDVATGS----------------------------VLNKS---RTELGALVDEIKFLARRFRSLTFVWCKRKSNSLAHSFAK
        AS+   W PP+ G +K+N+D AT S                            ++N S   R+E+  ++ E++ + + F S+   +  R  N++AHS AK
Subjt:  ASMNSLWKPPRLGTYKLNIDVATGS----------------------------VLNKS---RTELGALVDEIKFLARRFRSLTFVWCKRKSNSLAHSFAK

Query:  LAENSSENLVWMEDVPYSLIAL
        LA  + E ++WM   P  ++ L
Subjt:  LAENSSENLVWMEDVPYSLIAL

XP_023881690.1 uncharacterized protein LOC111994061 [Quercus suber]1.2e-0447.62Show/hide
Query:  TGSVLNKSRTELGALVDEIKFLARRFRSLTFVWCKRKSNSLAHSFAKLAENSSENLVWMEDVP
        T S L++SR  LG + D+I+ LA RFRS  F   KR +N++AHS A+ A N  + LVW+E+ P
Subjt:  TGSVLNKSRTELGALVDEIKFLARRFRSLTFVWCKRKSNSLAHSFAKLAENSSENLVWMEDVP

XP_023904193.1 uncharacterized protein LOC112015961 [Quercus suber]4.2e-0541.18Show/hide
Query:  SRTELGALVDEIKFLARRFRSLTFVWCKRKSNSLAHSFAKLAENSSENLVWMEDVPYSLIALHQPELV
        S + +G L+D++K LA  F  L++   KR+ N +AHS AK A++    +VWMEDVP  L ++ Q +L+
Subjt:  SRTELGALVDEIKFLARRFRSLTFVWCKRKSNSLAHSFAKLAENSSENLVWMEDVPYSLIALHQPELV

XP_023915286.1 uncharacterized protein LOC112026812 [Quercus suber]9.3e-0542.03Show/hide
Query:  NIDVATGSVLNKSR-TELGALVDEIKFLARRFRSLTFVWCKRKSNSLAHSFAKLAENSSENLVWMEDVP
        N++V      N+S  + LG LVD+++ LA R R + F   +R +N +AHS A+ A N SE+ VW+ED P
Subjt:  NIDVATGSVLNKSR-TELGALVDEIKFLARRFRSLTFVWCKRKSNSLAHSFAKLAENSSENLVWMEDVP

XP_030945744.1 uncharacterized protein LOC115970222 [Quercus lobata]1.6e-0438.1Show/hide
Query:  GTYKLNIDVATGSVLNKSRTELGALVDEIKFLARRFRSLTFVWCKRKSNSLAHSFAKLAENSSENLVWMEDVPYSLIALHQPEL
        G  K+ ID   G+  N    E G L +E K+L+ +F  ++F   +R+ N  AH+ A+ A + SE  +WMEDVP  L  + Q EL
Subjt:  GTYKLNIDVATGSVLNKSRTELGALVDEIKFLARRFRSLTFVWCKRKSNSLAHSFAKLAENSSENLVWMEDVPYSLIALHQPEL

TrEMBL top hitse value%identityAlignment
No hits found
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAATCCAATAAAACATGAATCATACAATGAGGCATTTGAGAAAGTCATTACTACAATTTTGGTGAAGGTCTTACAAGATTGTACCCTCATCATCCAGGTGTTTGAGGG
ACAACCTTACTCCCTAGCAAGCATGAACTCACTTTGGAAGCCTCCTCGTTTGGGTACCTATAAGTTGAATATTGATGTAGCTACTGGGTCGGTGTTGAATAAAAGCAGGA
CCGAGTTGGGAGCTCTAGTGGATGAAATCAAATTTTTAGCAAGGCGATTCCGTTCCCTGACTTTCGTATGGTGTAAAAGGAAGTCTAACAGCTTAGCTCACTCGTTCGCT
AAATTGGCAGAAAATTCTTCCGAAAACTTAGTTTGGATGGAAGATGTTCCTTACTCTTTAATTGCTTTACACCAACCGGAGCTAGTTGTGTCTGTTTTTAGAGGTGTCCG
TTGA
mRNA sequenceShow/hide mRNA sequence
ATGAATCCAATAAAACATGAATCATACAATGAGGCATTTGAGAAAGTCATTACTACAATTTTGGTGAAGGTCTTACAAGATTGTACCCTCATCATCCAGGTGTTTGAGGG
ACAACCTTACTCCCTAGCAAGCATGAACTCACTTTGGAAGCCTCCTCGTTTGGGTACCTATAAGTTGAATATTGATGTAGCTACTGGGTCGGTGTTGAATAAAAGCAGGA
CCGAGTTGGGAGCTCTAGTGGATGAAATCAAATTTTTAGCAAGGCGATTCCGTTCCCTGACTTTCGTATGGTGTAAAAGGAAGTCTAACAGCTTAGCTCACTCGTTCGCT
AAATTGGCAGAAAATTCTTCCGAAAACTTAGTTTGGATGGAAGATGTTCCTTACTCTTTAATTGCTTTACACCAACCGGAGCTAGTTGTGTCTGTTTTTAGAGGTGTCCG
TTGA
Protein sequenceShow/hide protein sequence
MNPIKHESYNEAFEKVITTILVKVLQDCTLIIQVFEGQPYSLASMNSLWKPPRLGTYKLNIDVATGSVLNKSRTELGALVDEIKFLARRFRSLTFVWCKRKSNSLAHSFA
KLAENSSENLVWMEDVPYSLIALHQPELVVSVFRGVR