CuGenDBv2

Gene ID	Sed0013558
Organism	Sechium edule (Chayote v1)
Description	photosystem II core complex proteins psbY, chloroplastic
Genome location	LG03:42413805..42414413
RNA-Seq Expression	Sed0013558
Synteny	Sed0013558
Gene Ontology terms	GO:0015979 - photosynthesis (biological process) GO:0034219 - carbohydrate transmembrane transport (biological process) GO:0045454 - cell redox homeostasis (biological process) GO:0009523 - photosystem II (cellular component) GO:0009534 - chloroplast thylakoid (cellular component) GO:0016021 - integral component of membrane (cellular component) GO:0030145 - manganese ion binding (molecular function) GO:0051119 - sugar transmembrane transporter activity (molecular function)
InterPro domains	IPR009388 - Photosystem II PsbY IPR038760 - Photosystem II PsbY, plant

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6598253.1 Photosystem II core complex proteins psbY, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]

4.6e-87

86.63

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Query:  MAASMATMAVLSVKCTTINPTKNHNIPKPIPKPISLLSLHNLPRGLISSKANENSNLSTFLSGTALAGAVFSTLSSSDPAFAAQQIAEIAADGDNRGLAL
        MAA+MATMAVLSVKCT+IN T+NHN PK IPKPISLLSL NLP+GLISSK+NE+SNLS FLS TA+AGAVFS LSSSDPAFAAQQIA+IAADGDNRG+AL
Subjt:  MAASMATMAVLSVKCTTINPTKNHNIPKPIPKPISLLSLHNLPRGLISSKANENSNLSTFLSGTALAGAVFSTLSSSDPAFAAQQIAEIAADGDNRGLAL

Query:  LLPLIPAIAWVLFNILQPALNQINKMRSDKGVIIGLGLGGLTASGFMNAPDASASEIAMVAADASSDGRGQLLLFVVAPAILWVLYNILQPALNQINRMR
        LLPLIPAIAWVLFNILQPALNQIN+MRSDKGVIIGLGLGGLTASGFM APDASASE+AM+A  +SSD RGQLLLFVV PAILWVLYNILQPALNQ+NRMR
Subjt:  LLPLIPAIAWVLFNILQPALNQINKMRSDKGVIIGLGLGGLTASGFMNAPDASASEIAMVAADASSDGRGQLLLFVVAPAILWVLYNILQPALNQINRMR

Query:  SD
        S+
Subjt:  SD

KGN62604.2 hypothetical protein Csa_018753 [Cucumis sativus]

1.6e-87

87.62

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Query:  MAASMATMAVLSVKCTTINPTKNHNIPKPIPKPISLLSLHNLPRGLISSKANENSNLSTFLSGTALAGAVFSTLSSSDPAFAAQQIAEIAADGDNRGLAL
        MAA+MATMAVLSVKCT+IN TK HN  K IPKPISLLSL NLP+GLISSK+N+NSNLSTFLS TA+AGAVF+TL SSDPAFAAQQIAEIAADGDNRGLAL
Subjt:  MAASMATMAVLSVKCTTINPTKNHNIPKPIPKPISLLSLHNLPRGLISSKANENSNLSTFLSGTALAGAVFSTLSSSDPAFAAQQIAEIAADGDNRGLAL

Query:  LLPLIPAIAWVLFNILQPALNQINKMRSDKGVIIGLGLGGLTASGFMNAPDASASEIAMVAADASSDGRGQLLLFVVAPAILWVLYNILQPALNQINRMR
        LLPLIPA+AWVLFNILQPALNQIN+MRSDKGVIIGLGLGGLTASGFM APDASASEIAM+A  +SSD RGQLLLFVVAPAILWVLYNILQPALNQ+NRMR
Subjt:  LLPLIPAIAWVLFNILQPALNQINKMRSDKGVIIGLGLGGLTASGFMNAPDASASEIAMVAADASSDGRGQLLLFVVAPAILWVLYNILQPALNQINRMR

Query:  SD
        S+
Subjt:  SD

XP_004142959.3 photosystem II core complex proteins psbY, chloroplastic [Cucumis sativus]

1.6e-87

87.62

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Query:  MAASMATMAVLSVKCTTINPTKNHNIPKPIPKPISLLSLHNLPRGLISSKANENSNLSTFLSGTALAGAVFSTLSSSDPAFAAQQIAEIAADGDNRGLAL
        MAA+MATMAVLSVKCT+IN TK HN  K IPKPISLLSL NLP+GLISSK+N+NSNLSTFLS TA+AGAVF+TL SSDPAFAAQQIAEIAADGDNRGLAL
Subjt:  MAASMATMAVLSVKCTTINPTKNHNIPKPIPKPISLLSLHNLPRGLISSKANENSNLSTFLSGTALAGAVFSTLSSSDPAFAAQQIAEIAADGDNRGLAL

Query:  LLPLIPAIAWVLFNILQPALNQINKMRSDKGVIIGLGLGGLTASGFMNAPDASASEIAMVAADASSDGRGQLLLFVVAPAILWVLYNILQPALNQINRMR
        LLPLIPA+AWVLFNILQPALNQIN+MRSDKGVIIGLGLGGLTASGFM APDASASEIAM+A  +SSD RGQLLLFVVAPAILWVLYNILQPALNQ+NRMR
Subjt:  LLPLIPAIAWVLFNILQPALNQINKMRSDKGVIIGLGLGGLTASGFMNAPDASASEIAMVAADASSDGRGQLLLFVVAPAILWVLYNILQPALNQINRMR

Query:  SD
        S+
Subjt:  SD

XP_008444395.1 PREDICTED: photosystem II core complex proteins psbY, chloroplastic [Cucumis melo]

2.1e-87

88.56

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Query:  MAASMATMAVLSVKCTTINPTKNHNIPKPIPKPISLLSLHNLPRGLISSKANENSNLSTFLSGTALAGAVFSTLSSSDPAFAAQQIAEIAADGDNRGLAL
        MAA+MATMAVLSVKCT+IN TK HN  K IPKPISLLSL NLP+GLISSK+NENSNLSTFLS TA+AGAVF+TL +SDPAFAAQQIAEIAADGDNRGLAL
Subjt:  MAASMATMAVLSVKCTTINPTKNHNIPKPIPKPISLLSLHNLPRGLISSKANENSNLSTFLSGTALAGAVFSTLSSSDPAFAAQQIAEIAADGDNRGLAL

Query:  LLPLIPAIAWVLFNILQPALNQINKMRSDKGVIIGLGLGGLTASGFMNAPDASASEIAMVAADASSDGRGQLLLFVVAPAILWVLYNILQPALNQINRMR
        LLPLIPAIAWVLFNILQPALNQIN+MRSDKGVIIGLGLGGLTASGFM APDASASEIAM+A  +SSD RGQLLLFVVAPAILWVLYNILQPALNQ+NRMR
Subjt:  LLPLIPAIAWVLFNILQPALNQINKMRSDKGVIIGLGLGGLTASGFMNAPDASASEIAMVAADASSDGRGQLLLFVVAPAILWVLYNILQPALNQINRMR

Query:  S
        S
Subjt:  S

XP_038886078.1 LOW QUALITY PROTEIN: photosystem II core complex proteins psbY, chloroplastic-like [Benincasa hispida]

9.0e-91

90.1

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Query:  MAASMATMAVLSVKCTTINPTKNHNIPKPIPKPISLLSLHNLPRGLISSKANENSNLSTFLSGTALAGAVFSTLSSSDPAFAAQQIAEIAADGDNRGLAL
        MAA+MATMAVLSVKCT+IN TKNHN PKPIPKPISLLSL NLP+GL+SSK+N+NSNLST LS TA+AGAVFSTLSSSDPAFAAQQIAEIAADGDNRGLAL
Subjt:  MAASMATMAVLSVKCTTINPTKNHNIPKPIPKPISLLSLHNLPRGLISSKANENSNLSTFLSGTALAGAVFSTLSSSDPAFAAQQIAEIAADGDNRGLAL

Query:  LLPLIPAIAWVLFNILQPALNQINKMRSDKGVIIGLGLGGLTASGFMNAPDASASEIAMVAADASSDGRGQLLLFVVAPAILWVLYNILQPALNQINRMR
        LLPLIPAIAWVLFNILQPALNQINKMRSDKGVIIGLGLGGLTASGFM APDASASEIAM+A  +SSD RGQLLLFVVAPAILWVLYNILQPALNQ+NRMR
Subjt:  LLPLIPAIAWVLFNILQPALNQINKMRSDKGVIIGLGLGGLTASGFMNAPDASASEIAMVAADASSDGRGQLLLFVVAPAILWVLYNILQPALNQINRMR

Query:  SD
        S+
Subjt:  SD

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LKA1 Uncharacterized protein

7.7e-88

87.62

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Query:  MAASMATMAVLSVKCTTINPTKNHNIPKPIPKPISLLSLHNLPRGLISSKANENSNLSTFLSGTALAGAVFSTLSSSDPAFAAQQIAEIAADGDNRGLAL
        MAA+MATMAVLSVKCT+IN TK HN  K IPKPISLLSL NLP+GLISSK+N+NSNLSTFLS TA+AGAVF+TL SSDPAFAAQQIAEIAADGDNRGLAL
Subjt:  MAASMATMAVLSVKCTTINPTKNHNIPKPIPKPISLLSLHNLPRGLISSKANENSNLSTFLSGTALAGAVFSTLSSSDPAFAAQQIAEIAADGDNRGLAL

Query:  LLPLIPAIAWVLFNILQPALNQINKMRSDKGVIIGLGLGGLTASGFMNAPDASASEIAMVAADASSDGRGQLLLFVVAPAILWVLYNILQPALNQINRMR
        LLPLIPA+AWVLFNILQPALNQIN+MRSDKGVIIGLGLGGLTASGFM APDASASEIAM+A  +SSD RGQLLLFVVAPAILWVLYNILQPALNQ+NRMR
Subjt:  LLPLIPAIAWVLFNILQPALNQINKMRSDKGVIIGLGLGGLTASGFMNAPDASASEIAMVAADASSDGRGQLLLFVVAPAILWVLYNILQPALNQINRMR

Query:  SD
        S+
Subjt:  SD

A0A1S3B9R1 photosystem II core complex proteins psbY, chloroplastic

1.0e-87

88.56

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Query:  MAASMATMAVLSVKCTTINPTKNHNIPKPIPKPISLLSLHNLPRGLISSKANENSNLSTFLSGTALAGAVFSTLSSSDPAFAAQQIAEIAADGDNRGLAL
        MAA+MATMAVLSVKCT+IN TK HN  K IPKPISLLSL NLP+GLISSK+NENSNLSTFLS TA+AGAVF+TL +SDPAFAAQQIAEIAADGDNRGLAL
Subjt:  MAASMATMAVLSVKCTTINPTKNHNIPKPIPKPISLLSLHNLPRGLISSKANENSNLSTFLSGTALAGAVFSTLSSSDPAFAAQQIAEIAADGDNRGLAL

Query:  LLPLIPAIAWVLFNILQPALNQINKMRSDKGVIIGLGLGGLTASGFMNAPDASASEIAMVAADASSDGRGQLLLFVVAPAILWVLYNILQPALNQINRMR
        LLPLIPAIAWVLFNILQPALNQIN+MRSDKGVIIGLGLGGLTASGFM APDASASEIAM+A  +SSD RGQLLLFVVAPAILWVLYNILQPALNQ+NRMR
Subjt:  LLPLIPAIAWVLFNILQPALNQINKMRSDKGVIIGLGLGGLTASGFMNAPDASASEIAMVAADASSDGRGQLLLFVVAPAILWVLYNILQPALNQINRMR

Query:  S
        S
Subjt:  S

A0A5A7UYJ2 Photosystem II core complex proteins psbY

1.0e-87

88.56

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Query:  MAASMATMAVLSVKCTTINPTKNHNIPKPIPKPISLLSLHNLPRGLISSKANENSNLSTFLSGTALAGAVFSTLSSSDPAFAAQQIAEIAADGDNRGLAL
        MAA+MATMAVLSVKCT+IN TK HN  K IPKPISLLSL NLP+GLISSK+NENSNLSTFLS TA+AGAVF+TL +SDPAFAAQQIAEIAADGDNRGLAL
Subjt:  MAASMATMAVLSVKCTTINPTKNHNIPKPIPKPISLLSLHNLPRGLISSKANENSNLSTFLSGTALAGAVFSTLSSSDPAFAAQQIAEIAADGDNRGLAL

Query:  LLPLIPAIAWVLFNILQPALNQINKMRSDKGVIIGLGLGGLTASGFMNAPDASASEIAMVAADASSDGRGQLLLFVVAPAILWVLYNILQPALNQINRMR
        LLPLIPAIAWVLFNILQPALNQIN+MRSDKGVIIGLGLGGLTASGFM APDASASEIAM+A  +SSD RGQLLLFVVAPAILWVLYNILQPALNQ+NRMR
Subjt:  LLPLIPAIAWVLFNILQPALNQINKMRSDKGVIIGLGLGGLTASGFMNAPDASASEIAMVAADASSDGRGQLLLFVVAPAILWVLYNILQPALNQINRMR

Query:  S
        S
Subjt:  S

A0A6J1BQF3 photosystem II core complex proteins psbY, chloroplastic

2.5e-83

83.66

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Query:  MAASMATMAVLSVKCTTINPTKNHNIPKPIPKPISLLSLHNLPRGLISSKANENSNLSTFLSGTALAGAVFSTLSSSDPAFAAQQIAEIAADGDNRGLAL
        MAA+MATMAVLSVKCT+IN +KNH  PKPI  PISLLSL NLP+ LISSKA++N NLSTFLS TA+AGAVFS  SSSDPAFAAQQIAEIAA+GDNRGLAL
Subjt:  MAASMATMAVLSVKCTTINPTKNHNIPKPIPKPISLLSLHNLPRGLISSKANENSNLSTFLSGTALAGAVFSTLSSSDPAFAAQQIAEIAADGDNRGLAL

Query:  LLPLIPAIAWVLFNILQPALNQINKMRSDKGVIIGLGLGGLTASGFMNAPDASASEIAMVAADASSDGRGQLLLFVVAPAILWVLYNILQPALNQINRMR
        LLPLIPAIAWVLFNILQPALNQIN+MRSDKGVIIGLGLGGL AS FM APDASA+EIAM+A  +SSD RGQLLLFV++PAILWVLYNILQPALNQ+NRMR
Subjt:  LLPLIPAIAWVLFNILQPALNQINKMRSDKGVIIGLGLGGLTASGFMNAPDASASEIAMVAADASSDGRGQLLLFVVAPAILWVLYNILQPALNQINRMR

Query:  SD
        S+
Subjt:  SD

F6GVJ9 Uncharacterized protein

5.7e-75

77.72

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Query:  MAASMATMAVLSVKCTTINPTKNHNIPKPIPKPISLLSLHNLPRGLISSKANENSNLSTFLSGTALAGAVFSTLSSSDPAFAAQQIAEIAADGDNRGLAL
        MAA++ATMA+L+ KC +IN  KN N+ KP  KPISLLS+ NLP+GL + K++EN NLST L+GTA+AGA+FSTLSS DPA AAQQIAEI ADGDNRGLAL
Subjt:  MAASMATMAVLSVKCTTINPTKNHNIPKPIPKPISLLSLHNLPRGLISSKANENSNLSTFLSGTALAGAVFSTLSSSDPAFAAQQIAEIAADGDNRGLAL

Query:  LLPLIPAIAWVLFNILQPALNQINKMRSDKGVIIGLGLGGLTASGFMNAPDASASEIAMVAADASSDGRGQLLLFVVAPAILWVLYNILQPALNQINRMR
        LLP+IPAIAWVLFNILQPALNQ+NKMRS KGVIIGLGLGGL ASGFM  P ASASEIA +A  ASSD RGQLLLFVV PAILWVLYNILQPALNQ+NRMR
Subjt:  LLPLIPAIAWVLFNILQPALNQINKMRSDKGVIIGLGLGGLTASGFMNAPDASASEIAMVAADASSDGRGQLLLFVVAPAILWVLYNILQPALNQINRMR

Query:  SD
        S+
Subjt:  SD

SwissProt top hits

e value

%identity

Alignment

O49347 Photosystem II core complex proteins psbY, chloroplastic

1.4e-46

56.1

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Query:  MAASMATMAVLSVKCTTINPTKNHNIPKPIPKPISLLSLHNLPRGLISSKANENSNLSTFLSGTALAGAVFSTLSSSDPAFAAQQIAEIA---ADGDNRG
        MAA+MAT    + KC ++NP+         PK    L      +  IS       N+S  ++ TALAGAVFS+LS S+PA A QQIA++A   A  DNRG
Subjt:  MAASMATMAVLSVKCTTINPTKNHNIPKPIPKPISLLSLHNLPRGLISSKANENSNLSTFLSGTALAGAVFSTLSSSDPAFAAQQIAEIA---ADGDNRG

Query:  LALLLPLIPAIAWVLFNILQPALNQINKMRSDKGVIIGLGL-GGLTASGFMNAPDASASEIAMVAADASSDGRGQLLLFVVAPAILWVLYNILQPALNQI
        LALLLP++PAIAWVL+NILQPA+NQ+NKMR  KG+++GLG+ GGL ASG +  P  + +  A  AA ASSD RGQLLL VV PA+LWVLYNILQPALNQI
Subjt:  LALLLPLIPAIAWVLFNILQPALNQINKMRSDKGVIIGLGL-GGLTASGFMNAPDASASEIAMVAADASSDGRGQLLLFVVAPAILWVLYNILQPALNQI

Query:  NRMRS
        N+MRS
Subjt:  NRMRS

P80470 Photosystem II core complex proteins psbY, chloroplastic

5.7e-48

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Query:  MAASMA-TMAVLSVKCTTINPTKNHNI-PKPIPKPISLLSLHNLPRGLISSKANENSNLSTFLSGTALAGAVFSTLSSSDPAFAAQQIAEIAAD---GDN
        MAA+MA TMAVL+ KC T+N  K  +  PKP  KPISL      P GL +SK      LS  ++  A+AGAVF+TL S DPAFA QQ+A+IAA+    DN
Subjt:  MAASMA-TMAVLSVKCTTINPTKNHNI-PKPIPKPISLLSLHNLPRGLISSKANENSNLSTFLSGTALAGAVFSTLSSSDPAFAAQQIAEIAAD---GDN

Query:  RGLALLLPLIPAIAWVLFNILQPALNQINKMRSD-KGVIIGLGLGGLTASGFMNA-PDASAS--EIAMVAADASSDGRGQLLLFVVAPAILWVLYNILQP
        RGLALLLP+IPA+ WVLFNILQPALNQINKMR++ K  I+GLGL GL  SG + A P+A A+  EIA       SD RG LLL VV PAI WVL+NILQP
Subjt:  RGLALLLPLIPAIAWVLFNILQPALNQINKMRSD-KGVIIGLGLGGLTASGFMNA-PDASAS--EIAMVAADASSDGRGQLLLFVVAPAILWVLYNILQP

Query:  ALNQINRMRS
        ALNQ+N+MRS
Subjt:  ALNQINRMRS

Arabidopsis top hits

e value

%identity

Alignment

AT1G67740.1 photosystem II BY

1.0e-47

56.1

Show/hide

Query:  MAASMATMAVLSVKCTTINPTKNHNIPKPIPKPISLLSLHNLPRGLISSKANENSNLSTFLSGTALAGAVFSTLSSSDPAFAAQQIAEIA---ADGDNRG
        MAA+MAT    + KC ++NP+         PK    L      +  IS       N+S  ++ TALAGAVFS+LS S+PA A QQIA++A   A  DNRG
Subjt:  MAASMATMAVLSVKCTTINPTKNHNIPKPIPKPISLLSLHNLPRGLISSKANENSNLSTFLSGTALAGAVFSTLSSSDPAFAAQQIAEIA---ADGDNRG

Query:  LALLLPLIPAIAWVLFNILQPALNQINKMRSDKGVIIGLGL-GGLTASGFMNAPDASASEIAMVAADASSDGRGQLLLFVVAPAILWVLYNILQPALNQI
        LALLLP++PAIAWVL+NILQPA+NQ+NKMR  KG+++GLG+ GGL ASG +  P  + +  A  AA ASSD RGQLLL VV PA+LWVLYNILQPALNQI
Subjt:  LALLLPLIPAIAWVLFNILQPALNQINKMRSDKGVIIGLGL-GGLTASGFMNAPDASASEIAMVAADASSDGRGQLLLFVVAPAILWVLYNILQPALNQI

Query:  NRMRS
        N+MRS
Subjt:  NRMRS

Sequences

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CDS sequence

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ATGGCAGCTTCCATGGCTACAATGGCAGTGCTCAGTGTCAAGTGCACAACCATCAACCCCACCAAAAACCACAACATCCCAAAGCCAATCCCCAAACCAATCTCCCTCCT
CTCCCTCCACAACCTTCCTAGAGGCCTAATCTCATCAAAAGCTAATGAAAATTCCAACTTATCAACCTTCCTCTCCGGCACCGCCCTCGCCGGAGCAGTCTTCTCAACCT
TGAGCTCATCGGACCCGGCCTTTGCAGCCCAACAGATTGCAGAGATAGCAGCCGACGGGGACAACCGGGGCTTAGCCCTTTTGCTGCCCCTTATTCCAGCCATAGCATGG
GTTCTGTTCAACATACTTCAGCCAGCACTCAACCAGATCAACAAAATGCGCAGTGACAAAGGGGTGATAATTGGCTTGGGATTGGGGGGCTTAACTGCATCAGGGTTCAT
GAACGCACCTGATGCTTCTGCTAGTGAGATCGCCATGGTTGCCGCCGATGCTTCAAGTGATGGCCGGGGGCAGCTTCTGCTGTTTGTCGTCGCACCCGCCATTCTTTGGG
TGTTGTACAACATTCTACAGCCAGCTTTGAATCAGATCAACAGGATGAGATCCGACTGA

mRNA sequence

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Protein sequence

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MAASMATMAVLSVKCTTINPTKNHNIPKPIPKPISLLSLHNLPRGLISSKANENSNLSTFLSGTALAGAVFSTLSSSDPAFAAQQIAEIAADGDNRGLALLLPLIPAIAW
VLFNILQPALNQINKMRSDKGVIIGLGLGGLTASGFMNAPDASASEIAMVAADASSDGRGQLLLFVVAPAILWVLYNILQPALNQINRMRSD

Sed0013558 (gene) of Chayote v1 genome