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Sed0013564 (gene) of Chayote v1 genome

Gene IDSed0013564
OrganismSechium edule (Chayote v1)
Description30S ribosomal protein S17, chloroplastic
Genome locationLG06:2485050..2488878
RNA-Seq ExpressionSed0013564
SyntenySed0013564
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0005840 - ribosome (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
GO:0019843 - rRNA binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0041013.1 30S ribosomal protein S17-like [Cucumis melo var. makuwa]6.7e-4290.38Show/hide
Query:  MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDKVKLDPSRPLSKHKHWVVAEILRKARIYVPQSQHQNQTVSDKSKVPS
        MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGD+VKLDPSRPLSK KHWVVAEILRKARIY P SQ  NQTVSDKS V +
Subjt:  MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDKVKLDPSRPLSKHKHWVVAEILRKARIYVPQSQHQNQTVSDKSKVPS

Query:  PSTS
        PST+
Subjt:  PSTS

TYK20371.1 30S ribosomal protein S17-like [Cucumis melo var. makuwa]6.7e-4290.38Show/hide
Query:  MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDKVKLDPSRPLSKHKHWVVAEILRKARIYVPQSQHQNQTVSDKSKVPS
        MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGD+VKLDPSRPLSK KHWVVAEILRKARIY P SQ  NQTVSDKS V +
Subjt:  MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDKVKLDPSRPLSKHKHWVVAEILRKARIYVPQSQHQNQTVSDKSKVPS

Query:  PSTS
        PST+
Subjt:  PSTS

XP_016903240.1 PREDICTED: 30S ribosomal protein S17-like [Cucumis melo]6.7e-4290.38Show/hide
Query:  MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDKVKLDPSRPLSKHKHWVVAEILRKARIYVPQSQHQNQTVSDKSKVPS
        MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGD+VKLDPSRPLSK KHWVVAEILRKARIY P SQ  NQTVSDKS V +
Subjt:  MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDKVKLDPSRPLSKHKHWVVAEILRKARIYVPQSQHQNQTVSDKSKVPS

Query:  PSTS
        PST+
Subjt:  PSTS

XP_022155383.1 uncharacterized protein LOC111022528 [Momordica charantia]5.2e-4289.42Show/hide
Query:  MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDKVKLDPSRPLSKHKHWVVAEILRKARIYVPQSQHQNQTVSDKSKVPS
        MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGD+VKLDPSRPLSKHKHW+VAEILRKARIYVP SQ  +QT SDKSK  +
Subjt:  MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDKVKLDPSRPLSKHKHWVVAEILRKARIYVPQSQHQNQTVSDKSKVPS

Query:  PSTS
        PST+
Subjt:  PSTS

XP_038891417.1 30S ribosomal protein S17-like [Benincasa hispida]8.8e-4289.42Show/hide
Query:  MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDKVKLDPSRPLSKHKHWVVAEILRKARIYVPQSQHQNQTVSDKSKVPS
        MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGD+V+LDPSRPLSKHKHWVVAEILRKARIY P S+  NQ VSDKSK  +
Subjt:  MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDKVKLDPSRPLSKHKHWVVAEILRKARIYVPQSQHQNQTVSDKSKVPS

Query:  PSTS
        PSTS
Subjt:  PSTS

TrEMBL top hitse value%identityAlignment
A0A1S4E5I9 30S ribosomal protein S17, chloroplastic3.3e-4290.38Show/hide
Query:  MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDKVKLDPSRPLSKHKHWVVAEILRKARIYVPQSQHQNQTVSDKSKVPS
        MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGD+VKLDPSRPLSK KHWVVAEILRKARIY P SQ  NQTVSDKS V +
Subjt:  MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDKVKLDPSRPLSKHKHWVVAEILRKARIYVPQSQHQNQTVSDKSKVPS

Query:  PSTS
        PST+
Subjt:  PSTS

A0A5A7TD01 30S ribosomal protein S17, chloroplastic3.3e-4290.38Show/hide
Query:  MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDKVKLDPSRPLSKHKHWVVAEILRKARIYVPQSQHQNQTVSDKSKVPS
        MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGD+VKLDPSRPLSK KHWVVAEILRKARIY P SQ  NQTVSDKS V +
Subjt:  MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDKVKLDPSRPLSKHKHWVVAEILRKARIYVPQSQHQNQTVSDKSKVPS

Query:  PSTS
        PST+
Subjt:  PSTS

A0A5D3D9X1 30S ribosomal protein S17, chloroplastic3.3e-4290.38Show/hide
Query:  MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDKVKLDPSRPLSKHKHWVVAEILRKARIYVPQSQHQNQTVSDKSKVPS
        MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGD+VKLDPSRPLSK KHWVVAEILRKARIY P SQ  NQTVSDKS V +
Subjt:  MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDKVKLDPSRPLSKHKHWVVAEILRKARIYVPQSQHQNQTVSDKSKVPS

Query:  PSTS
        PST+
Subjt:  PSTS

A0A6J1DMT5 30S ribosomal protein S17, chloroplastic2.5e-4289.42Show/hide
Query:  MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDKVKLDPSRPLSKHKHWVVAEILRKARIYVPQSQHQNQTVSDKSKVPS
        MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGD+VKLDPSRPLSKHKHW+VAEILRKARIYVP SQ  +QT SDKSK  +
Subjt:  MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDKVKLDPSRPLSKHKHWVVAEILRKARIYVPQSQHQNQTVSDKSKVPS

Query:  PSTS
        PST+
Subjt:  PSTS

A0A6J1JP01 30S ribosomal protein S17, chloroplastic5.6e-4289.42Show/hide
Query:  MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDKVKLDPSRPLSKHKHWVVAEILRKARIYVPQSQHQNQTVSDKSKVPS
        MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGD+VKLDPSRPLSKHK WVVAEILRKARIY P SQ +NQ VSDK KV +
Subjt:  MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDKVKLDPSRPLSKHKHWVVAEILRKARIYVPQSQHQNQTVSDKSKVPS

Query:  PSTS
        PST+
Subjt:  PSTS

SwissProt top hitse value%identityAlignment
A7HM43 30S ribosomal protein S176.4e-1955.7Show/hide
Query:  KQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDKVKLDPSRPLSKHKHWVVAEILRKARI
        K++VG+VVS+KM K+V V V+RL  H  + +YVKRT KF AHDENN C +GD V+++ SRPLSK K WVV  IL ++++
Subjt:  KQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDKVKLDPSRPLSKHKHWVVAEILRKARI

A8ZV66 30S ribosomal protein S171.4e-1857.14Show/hide
Query:  KQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDKVKLDPSRPLSKHKHWVVAEILRKA
        +Q  G VVS+KM K+V+VAV+RL  H+ Y +YV+RT+KF AHDE NQC +GDKV +  SRPLS+ KHW V  ++ KA
Subjt:  KQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDKVKLDPSRPLSKHKHWVVAEILRKA

B1I1J7 30S ribosomal protein S174.0e-2165.33Show/hide
Query:  GMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDKVKLDPSRPLSKHKHWVVAEILRKARI
        G VVS+KM K+VVVAVD L  H LY R V+RT KFMAHDE+NQC IGDKVK+  +RPLS+HK W VAE+L +++I
Subjt:  GMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDKVKLDPSRPLSKHKHWVVAEILRKARI

Q6LVA7 30S ribosomal protein S171.4e-1852.63Show/hide
Query:  VGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDKVKLDPSRPLSKHKHWVVAEILRKARI
        +G V+S+KM KS+VVA++R+  H +Y +Y+KRT+K  AHDENN+CN+GD V++   RPLSK K W +  I+ KAR+
Subjt:  VGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDKVKLDPSRPLSKHKHWVVAEILRKARI

Q8R7W3 30S ribosomal protein S171.1e-1858.11Show/hide
Query:  VGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDKVKLDPSRPLSKHKHWVVAEILRKA
        +G VVSNKMQK++VVAV+  F H LY + VKRT K+  HDENN CN+GD VK+  +RPLSK K W + E+++KA
Subjt:  VGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDKVKLDPSRPLSKHKHWVVAEILRKA

Arabidopsis top hitse value%identityAlignment
AT1G49400.1 Nucleic acid-binding, OB-fold-like protein5.5e-3463.79Show/hide
Query:  MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDKVKLDPSRPLSKHKHWVVAEILRKARIYVPQ------------SQHQ
        MK V+G VVSNKMQKSVVVAVDRLF++K+YNRYVKRTSKFMAHD+ + CNIGD+VKLDPSRPLSK+KHW+VAEI++KARIY P+            S   
Subjt:  MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDKVKLDPSRPLSKHKHWVVAEILRKARIYVPQ------------SQHQ

Query:  NQTVSDKSKVPSPSTS
            S +S++P  STS
Subjt:  NQTVSDKSKVPSPSTS

AT1G79850.1 ribosomal protein S177.3e-1042.31Show/hide
Query:  MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDKVKLDPSRPLSKHKHWVVAEILRKA
        MK + G VV     K+V V V RL  H  Y R V+   K+ AHD +NQ  +GD V+L+ SRP+SK K +V   ++ +A
Subjt:  MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDKVKLDPSRPLSKHKHWVVAEILRKA

AT3G18880.1 Nucleic acid-binding, OB-fold-like protein1.1e-3478.82Show/hide
Query:  MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDKVKLDPSRPLSKHKHWVVAEILRKARIYVPQS
        MK V+G VVSNKMQ SVVVAVDRLF++ +YNRYVKRTSKFMAHDE + CNIGD+VKLDPSRPLSKHKHW+V+EI++KARIY PQ+
Subjt:  MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDKVKLDPSRPLSKHKHWVVAEILRKARIYVPQS

AT4G30800.1 Nucleic acid-binding, OB-fold-like protein6.0e-0436.62Show/hide
Query:  GMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAH-DENNQCNIGDKVKLDPSRPLSKHKHWVVAEIL
        G   S KMQ++++V  D L + K Y RY KR S   AH     +   GD+V +   RPLSK   + V +++
Subjt:  GMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAH-DENNQCNIGDKVKLDPSRPLSKHKHWVVAEIL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAGCAGGTAGTGGGCATGGTGGTCTCAAACAAGATGCAGAAATCAGTGGTGGTTGCTGTGGATAGATTGTTCTATCATAAGCTCTATAATCGTTACGTTAAGCGTAC
TTCCAAGTTCATGGCTCACGATGAGAATAATCAGTGCAATATTGGTGACAAGGTTAAACTGGATCCTTCTAGGCCGTTGAGCAAGCATAAACATTGGGTGGTTGCTGAAA
TTTTGAGGAAAGCACGGATTTACGTACCACAATCACAGCATCAAAACCAAACTGTTTCAGACAAAAGCAAAGTTCCATCTCCTTCAACCTCCTAA
mRNA sequenceShow/hide mRNA sequence
ATTCCTTAGAACCCTAGTTTTCCTCTTTCTTTCCGCAACCATCTTCTTTGCTATCTCTACTTCAGCCGTAAATCTTTCACCCAATTTCTTTCCTTCGATGATTTTAGGAA
CCCACTAATTCGGATTCGTGAATTTGTTCATCCAATCCAATCCATTTCCAGTTTTGCTCAAAACCCTCGGATTTGTAGCAGCTTCTAGGGTTTTTGTTCTTCATTTTTGG
GGGATCAGTTTTCATTCAATCCGAGGAACAGGATGAAGCAGGTAGTGGGCATGGTGGTCTCAAACAAGATGCAGAAATCAGTGGTGGTTGCTGTGGATAGATTGTTCTAT
CATAAGCTCTATAATCGTTACGTTAAGCGTACTTCCAAGTTCATGGCTCACGATGAGAATAATCAGTGCAATATTGGTGACAAGGTTAAACTGGATCCTTCTAGGCCGTT
GAGCAAGCATAAACATTGGGTGGTTGCTGAAATTTTGAGGAAAGCACGGATTTACGTACCACAATCACAGCATCAAAACCAAACTGTTTCAGACAAAAGCAAAGTTCCAT
CTCCTTCAACCTCCTAAGGGGAAACTACTGCAAAGTAGATCGAAAAGTTTGAGGCCAAAGTAGATCGAAAAGTTTTTGCATCGAAAAAACTTTAGGATGAAAGCTCTGGA
AAATGGCTACTGTAAGCAGTATGTTTGTCATGTCAAAGATTTGAAGCTGCGTGACTGTTATATTTTGTACTGTTTAGTTTCAACCTTTTTCCCATCAGTAATTTCTCCAC
AATCTTTTGGGAAGTTGAAACTCGAAATTTTTATGAATTCAAAAGTTTCCATCCACAAGGTATTTACCACTTGGTTGAACTCAACAGGTTATTTATGATTCTAAGATTTT
GTTTCATA
Protein sequenceShow/hide protein sequence
MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDKVKLDPSRPLSKHKHWVVAEILRKARIYVPQSQHQNQTVSDKSKVPSPSTS